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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    879201 8uxu:H (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879202 8uxu:I (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879203 8uxu:J (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879204 8uxu:K (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879205 8uxu:L (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879206 8uxu:M (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879207 8uxu:N (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879208 8uxw:A (2.7) BS01 ADP ? GO:0003779 ... P32390 38448439
    879209 8uxw:B (2.7) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    879210 8uxw:H (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879211 8uxw:I (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879212 8uxw:M (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879213 8uxw:N (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879214 8uxw:O (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879215 8uxw:P (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879216 8uxw:Q (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879217 8uxw:R (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879218 8uxx:A (3.2) BS01 ADP ? GO:0003779 ... P32390 38448439
    879219 8uxx:A (3.2) BS02 BEF ? GO:0003779 ... P32390 38448439
    879220 8uxx:B (3.2) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    879221 8uxx:H (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879222 8uxx:I (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879223 8uxx:M (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879224 8uxx:M (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879225 8uxx:N (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879226 8uxx:N (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879227 8uxx:O (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879228 8uxx:O (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879229 8uxx:P (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879230 8uxx:P (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879231 8uxx:Q (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879232 8uxx:Q (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879233 8uxx:R (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879234 8uxx:R (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879235 8uy1:A (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    879236 8uy1:B (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    879237 8uy1:C (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    879238 8uy1:D (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    879239 8uy2:A (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    879240 8uy2:A (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    879241 8uy2:A (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    879242 8uy2:B (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    879243 8uy2:B (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    879244 8uy2:B (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    879245 8uy2:C (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    879246 8uy2:C (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    879247 8uy2:C (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    879248 8uy2:D (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    879249 8uy2:D (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    879250 8uy2:D (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    879251 8uy6:A (1.9) BS01 CDL N/A N/A P60844 N/A
    879252 8uy6:C (1.9) BS01 CDL N/A N/A P60844 N/A
    879253 8uy6:E (1.9) BS01 CDL N/A N/A P60844 N/A
    879254 8uy6:G (1.9) BS01 CDL N/A N/A P60844 N/A
    879255 8uy6:I (1.9) BS01 CDL N/A N/A P60844 N/A
    879256 8uy6:K (1.9) BS01 CDL N/A N/A P60844 N/A
    879257 8uy6:M (1.9) BS01 CDL N/A N/A P60844 N/A
    879258 8uy6:O (1.9) BS01 CDL N/A N/A P60844 N/A
    879259 8uyd:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879260 8uyd:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879261 8uyh:A (2.84) BS01 ANP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    879262 8uyh:B (2.84) BS01 ANP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    879263 8uyh:B (2.84) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    879264 8uyi:A (3.13) BS01 ADP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    879265 8uyi:A (3.13) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    879266 8uyi:B (3.13) BS01 ADP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    879267 8uyi:B (3.13) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    879268 8uyn:A (2.0) BS01 4OL N/A N/A P80188 39009580
    879269 8uyn:B (2.0) BS01 4OL N/A N/A P80188 39009580
    879270 8uyn:C (2.0) BS01 PIN N/A N/A P80188 39009580
    879271 8uyn:C (2.0) BS02 4OL N/A N/A P80188 39009580
    879272 8uz0:J (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879273 8uz0:K (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879274 8uz0:L (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879275 8uz0:M (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879276 8uz0:N (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879277 8uz0:O (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879278 8uz0:P (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879279 8uz0:Q (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879280 8uz0:R (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879281 8uz1:J (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879282 8uz1:J (3.6) BS02 MG 3.6.4.- GO:0001725 ... P68139 38448439
    879283 8uz1:J (3.6) BS03 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879284 8uz1:K (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879285 8uz1:K (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879286 8uz1:L (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879287 8uz1:L (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879288 8uz1:M (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879289 8uz1:M (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879290 8uz1:N (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879291 8uz1:N (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879292 8uz1:O (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879293 8uz1:O (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879294 8uz1:P (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879295 8uz1:P (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879296 8uz1:Q (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879297 8uz1:Q (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879298 8uz1:R (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    879299 8uz1:R (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    879300 8uz5:A (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879301 8uz5:B (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879302 8uz6:A (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879303 8uz6:B (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879304 8uz9:A (2.08) BS01 4OL N/A N/A P80188 39009580
    879305 8uz9:B (2.08) BS01 4OL N/A N/A P80188 39009580
    879306 8uz9:C (2.08) BS01 4OL N/A N/A P80188 39009580
    879307 8uza:A (3.17) BS01 rna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    879308 8uza:A (3.17) BS02 dna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    879309 8uza:A (3.17) BS03 dna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    879310 8uzb:A (2.63) BS01 rna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    879311 8uzb:A (2.63) BS02 dna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    879312 8uzb:A (2.63) BS03 dna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    879313 8uzd:A (2.721) BS01 SAH N/A GO:0008168 ... N/A N/A
    879314 8uzd:A (2.721) BS02 CFF N/A GO:0008168 ... N/A N/A
    879315 8uzd:B (2.721) BS01 SAH N/A GO:0008168 ... N/A N/A
    879316 8uzd:B (2.721) BS02 CFF N/A GO:0008168 ... N/A N/A
    879317 8uze:A (3.03) BS01 ZN N/A N/A N/A N/A
    879318 8uze:B (3.03) BS01 ZN N/A N/A N/A N/A
    879319 8uzf:A (3.283) BS01 ZN N/A N/A N/A N/A
    879320 8uzf:B (3.283) BS01 ZN N/A N/A N/A N/A
    879321 8uzh:A (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19
    Q12306    		 38485491
    879322 8uzh:A (2.8) BS02 CA ?
    3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19
    Q12306    		 38485491
    879323 8uzh:B (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19
    Q12306    		 38485491
    879324 8uzj:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879325 8uzj:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879326 8uzj:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879327 8uzj:A (2.3) BS04 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879328 8uzj:A (2.3) BS05 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879329 8uzj:A (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879330 8uzj:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879331 8uzj:B (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879332 8uzj:B (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879333 8uzj:B (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879334 8uzj:B (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879335 8uzj:B (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879336 8uzj:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879337 8uzj:C (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879338 8uzj:C (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879339 8uzj:C (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879340 8uzj:C (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879341 8uzj:C (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879342 8uzj:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879343 8uzj:D (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879344 8uzj:D (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879345 8uzj:D (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879346 8uzj:D (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879347 8uzj:D (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879348 8uzj:E (2.3) BS01 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879349 8uzj:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879350 8uzj:E (2.3) BS03 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879351 8uzj:E (2.3) BS04 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879352 8uzj:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879353 8uzj:E (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    879354 8uzk:A (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879355 8uzk:B (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879356 8uzk:C (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879357 8uzk:D (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879358 8uzk:D (1.9) BS02 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879359 8uzm:A (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879360 8uzm:B (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879361 8uzm:C (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879362 8uzm:D (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879363 8uzn:A (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879364 8uzn:B (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879365 8uzn:C (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879366 8uzn:D (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879367 8uzo:A (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879368 8uzo:B (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879369 8uzo:C (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879370 8uzo:D (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    879371 8uzt:A (1.9) BS01 dna N/A N/A Q04837 39106165
    879372 8uzt:B (1.9) BS01 dna N/A N/A Q04837 39106165
    879373 8uzt:C (1.9) BS01 dna N/A N/A Q04837 39106165
    879374 8uzt:D (1.9) BS01 dna N/A N/A Q04837 39106165
    879375 8uzu:A (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    879376 8uzu:B (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    879377 8uzu:C (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    879378 8uzu:D (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    879379 8uzv:A (1.846) BS01 Y9G N/A N/A Q9NUW8 N/A
    879380 8uzv:B (1.846) BS01 Y9G N/A N/A Q9NUW8 N/A
    879381 8uzx:A (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879382 8uzx:B (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879383 8uzx:C (5.4) BS01 CA ? GO:0003009 ... P63317 38387550
    879384 8uzx:C (5.4) BS02 CA ? GO:0003009 ... P63317 38387550
    879385 8uzx:C (5.4) BS03 CA ? GO:0003009 ... P63317 38387550
    879386 8uzy:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879387 8uzy:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879388 8uzy:C (5.3) BS01 CA ? GO:0003009 ... P63317 38387550
    879389 8uzy:C (5.3) BS02 CA ? GO:0003009 ... P63317 38387550
    879390 8uzy:C (5.3) BS03 CA ? GO:0003009 ... P63317 38387550
    879391 8uzz:A (1.93) BS01 YA5 N/A N/A Q9NUW8 N/A
    879392 8uzz:B (1.93) BS01 YA5 N/A N/A Q9NUW8 N/A
    879393 8v01:A (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879394 8v01:B (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879395 8v01:C (5.5) BS01 CA ? GO:0003009 ... P63317 38387550
    879396 8v01:C (5.5) BS02 CA ? GO:0003009 ... P63317 38387550
    879397 8v01:C (5.5) BS03 CA ? GO:0003009 ... P63317 38387550
    879398 8v02:D (2.9) BS01 JZ0 N/A GO:0004984 ... Q177X3 38870275
    879399 8v04:B (1.58) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 N/A
    879400 8v05:A (2.08) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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