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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    878601 8uvr:2F (2.6) BS03 MG N/A N/A Q5SHN9 38165935
    878602 8uvr:2F (2.6) BS04 MG N/A N/A Q5SHN9 38165935
    878603 8uvr:2G (2.6) BS01 rna N/A N/A Q5SHQ0 38165935
    878604 8uvr:2G (2.6) BS02 rna N/A N/A Q5SHQ0 38165935
    878605 8uvr:2G (2.6) BS03 rna N/A N/A Q5SHQ0 38165935
    878606 8uvr:2H (2.6) BS01 rna N/A N/A P0DOY8 38165935
    878607 8uvr:2I (2.6) BS01 rna N/A N/A Q5SLQ1 38165935
    878608 8uvr:2N (2.6) BS01 rna N/A N/A P60488 38165935
    878609 8uvr:2O (2.6) BS01 rna N/A N/A Q5SHP8 38165935
    878610 8uvr:2O (2.6) BS02 rna N/A N/A Q5SHP8 38165935
    878611 8uvr:2P (2.6) BS01 rna N/A N/A Q5SHQ7 38165935
    878612 8uvr:2Q (2.6) BS01 rna N/A N/A P60489 38165935
    878613 8uvr:2Q (2.6) BS02 rna N/A N/A P60489 38165935
    878614 8uvr:2Q (2.6) BS03 rna N/A N/A P60489 38165935
    878615 8uvr:2R (2.6) BS01 rna N/A N/A Q9Z9H5 38165935
    878616 8uvr:2S (2.6) BS01 rna N/A N/A Q5SHQ4 38165935
    878617 8uvr:2S (2.6) BS02 rna N/A N/A Q5SHQ4 38165935
    878618 8uvr:2T (2.6) BS01 rna N/A N/A P60490 38165935
    878619 8uvr:2T (2.6) BS02 rna N/A N/A P60490 38165935
    878620 8uvr:2U (2.6) BS01 rna N/A N/A P60491 38165935
    878621 8uvr:2U (2.6) BS02 MG N/A N/A P60491 38165935
    878622 8uvr:2V (2.6) BS01 rna N/A N/A P60492 38165935
    878623 8uvr:2V (2.6) BS02 MG N/A N/A P60492 38165935
    878624 8uvr:2W (2.6) BS01 rna N/A N/A Q5SHP3 38165935
    878625 8uvr:2W (2.6) BS02 MG N/A N/A Q5SHP3 38165935
    878626 8uvr:2X (2.6) BS01 rna N/A N/A Q5SHP0 38165935
    878627 8uvr:2X (2.6) BS02 MG N/A N/A Q5SHP0 38165935
    878628 8uvr:2Y (2.6) BS01 rna N/A N/A Q5SHP9 38165935
    878629 8uvr:2Y (2.6) BS02 ZN N/A N/A Q5SHP9 38165935
    878630 8uvr:2Z (2.6) BS01 rna N/A N/A Q5SHZ1 38165935
    878631 8uvr:2Z (2.6) BS02 rna N/A N/A Q5SHZ1 38165935
    878632 8uvr:2Z (2.6) BS03 MG N/A N/A Q5SHZ1 38165935
    878633 8uvr:2b (2.6) BS01 rna N/A N/A P80371 38165935
    878634 8uvr:2c (2.6) BS01 rna N/A N/A P80372 38165935
    878635 8uvr:2d (2.6) BS01 rna N/A N/A P80373 38165935
    878636 8uvr:2d (2.6) BS02 MG N/A N/A P80373 38165935
    878637 8uvr:2d (2.6) BS03 SF4 N/A N/A P80373 38165935
    878638 8uvr:2e (2.6) BS01 rna N/A N/A Q5SHQ5 38165935
    878639 8uvr:2f (2.6) BS01 rna N/A N/A Q5SLP8 38165935
    878640 8uvr:2g (2.6) BS01 rna N/A N/A P17291 38165935
    878641 8uvr:2g (2.6) BS02 rna N/A N/A P17291 38165935
    878642 8uvr:2h (2.6) BS01 rna N/A N/A P0DOY9 38165935
    878643 8uvr:2i (2.6) BS01 rna N/A N/A P80374 38165935
    878644 8uvr:2i (2.6) BS02 rna N/A N/A P80374 38165935
    878645 8uvr:2j (2.6) BS01 rna N/A N/A Q5SHN7 38165935
    878646 8uvr:2k (2.6) BS01 rna N/A N/A P80376 38165935
    878647 8uvr:2k (2.6) BS02 MG N/A N/A P80376 38165935
    878648 8uvr:2l (2.6) BS01 rna N/A N/A Q5SHN3 38165935
    878649 8uvr:2l (2.6) BS02 MG N/A N/A Q5SHN3 38165935
    878650 8uvr:2l (2.6) BS03 MG N/A N/A Q5SHN3 38165935
    878651 8uvr:2m (2.6) BS01 rna N/A N/A P80377 38165935
    878652 8uvr:2n (2.6) BS01 rna N/A N/A P0DOY6 38165935
    878653 8uvr:2n (2.6) BS02 ZN N/A N/A P0DOY6 38165935
    878654 8uvr:2o (2.6) BS01 rna N/A N/A Q5SJ76 38165935
    878655 8uvr:2o (2.6) BS02 rna N/A N/A Q5SJ76 38165935
    878656 8uvr:2p (2.6) BS01 rna N/A N/A Q5SJH3 38165935
    878657 8uvr:2q (2.6) BS01 rna N/A N/A P0DOY7 38165935
    878658 8uvr:2q (2.6) BS02 MG N/A N/A P0DOY7 38165935
    878659 8uvr:2q (2.6) BS03 MG N/A N/A P0DOY7 38165935
    878660 8uvr:2r (2.6) BS01 rna N/A N/A Q5SLQ0 38165935
    878661 8uvr:2s (2.6) BS01 rna N/A N/A Q5SHP2 38165935
    878662 8uvr:2t (2.6) BS01 rna N/A N/A P80380 38165935
    878663 8uvr:2t (2.6) BS02 MG N/A N/A P80380 38165935
    878664 8uvs:10 (2.75) BS01 rna N/A N/A P60493 38165935
    878665 8uvs:10 (2.75) BS02 rna N/A N/A P60493 38165935
    878666 8uvs:10 (2.75) BS03 rna N/A N/A P60493 38165935
    878667 8uvs:10 (2.75) BS04 MG N/A N/A P60493 38165935
    878668 8uvs:10 (2.75) BS05 MG N/A N/A P60493 38165935
    878669 8uvs:11 (2.75) BS01 rna N/A N/A P60494 38165935
    878670 8uvs:11 (2.75) BS02 MG N/A N/A P60494 38165935
    878671 8uvs:12 (2.75) BS01 rna N/A N/A Q5SHP6 38165935
    878672 8uvs:13 (2.75) BS01 rna N/A N/A Q5SHQ6 38165935
    878673 8uvs:13 (2.75) BS02 rna N/A N/A Q5SHQ6 38165935
    878674 8uvs:13 (2.75) BS03 MG N/A N/A Q5SHQ6 38165935
    878675 8uvs:13 (2.75) BS04 MG N/A N/A Q5SHQ6 38165935
    878676 8uvs:13 (2.75) BS05 MG N/A N/A Q5SHQ6 38165935
    878677 8uvs:14 (2.75) BS01 rna N/A N/A Q5SJE1 38165935
    878678 8uvs:14 (2.75) BS02 ZN N/A N/A Q5SJE1 38165935
    878679 8uvs:15 (2.75) BS01 rna N/A N/A P80339 38165935
    878680 8uvs:15 (2.75) BS02 MG N/A N/A P80339 38165935
    878681 8uvs:15 (2.75) BS03 ZN N/A N/A P80339 38165935
    878682 8uvs:16 (2.75) BS01 rna N/A N/A P35871 38165935
    878683 8uvs:16 (2.75) BS02 MG N/A N/A P35871 38165935
    878684 8uvs:16 (2.75) BS03 MG N/A N/A P35871 38165935
    878685 8uvs:16 (2.75) BS04 ZN N/A N/A P35871 38165935
    878686 8uvs:17 (2.75) BS01 rna N/A N/A P80340 38165935
    878687 8uvs:17 (2.75) BS02 MG N/A N/A P80340 38165935
    878688 8uvs:17 (2.75) BS03 MG N/A N/A P80340 38165935
    878689 8uvs:18 (2.75) BS01 rna N/A N/A Q5SKU1 38165935
    878690 8uvs:18 (2.75) BS02 MG N/A N/A Q5SKU1 38165935
    878691 8uvs:18 (2.75) BS03 MG N/A N/A Q5SKU1 38165935
    878692 8uvs:18 (2.75) BS04 MG N/A N/A Q5SKU1 38165935
    878693 8uvs:18 (2.75) BS05 MG N/A N/A Q5SKU1 38165935
    878694 8uvs:19 (2.75) BS01 rna N/A N/A Q5SHR2 38165935
    878695 8uvs:19 (2.75) BS02 ZN N/A N/A Q5SHR2 38165935
    878696 8uvs:1D (2.75) BS01 rna N/A N/A P60405 38165935
    878697 8uvs:1D (2.75) BS02 rna N/A N/A P60405 38165935
    878698 8uvs:1D (2.75) BS03 MG N/A N/A P60405 38165935
    878699 8uvs:1D (2.75) BS04 MG N/A N/A P60405 38165935
    878700 8uvs:1D (2.75) BS05 MG N/A N/A P60405 38165935
    878701 8uvs:1D (2.75) BS06 MG N/A N/A P60405 38165935
    878702 8uvs:1D (2.75) BS07 MG N/A N/A P60405 38165935
    878703 8uvs:1D (2.75) BS08 MG N/A N/A P60405 38165935
    878704 8uvs:1D (2.75) BS09 MG N/A N/A P60405 38165935
    878705 8uvs:1D (2.75) BS10 MG N/A N/A P60405 38165935
    878706 8uvs:1D (2.75) BS11 MG N/A N/A P60405 38165935
    878707 8uvs:1D (2.75) BS12 MG N/A N/A P60405 38165935
    878708 8uvs:1D (2.75) BS13 MG N/A N/A P60405 38165935
    878709 8uvs:1E (2.75) BS01 rna N/A N/A Q5SHN8 38165935
    878710 8uvs:1E (2.75) BS02 MG N/A N/A Q5SHN8 38165935
    878711 8uvs:1E (2.75) BS03 MG N/A N/A Q5SHN8 38165935
    878712 8uvs:1E (2.75) BS04 MG N/A N/A Q5SHN8 38165935
    878713 8uvs:1E (2.75) BS05 MG N/A N/A Q5SHN8 38165935
    878714 8uvs:1E (2.75) BS06 MG N/A N/A Q5SHN8 38165935
    878715 8uvs:1F (2.75) BS01 rna N/A N/A Q5SHN9 38165935
    878716 8uvs:1F (2.75) BS02 MG N/A N/A Q5SHN9 38165935
    878717 8uvs:1F (2.75) BS03 MG N/A N/A Q5SHN9 38165935
    878718 8uvs:1F (2.75) BS04 MG N/A N/A Q5SHN9 38165935
    878719 8uvs:1F (2.75) BS05 MG N/A N/A Q5SHN9 38165935
    878720 8uvs:1F (2.75) BS06 MG N/A N/A Q5SHN9 38165935
    878721 8uvs:1F (2.75) BS07 MG N/A N/A Q5SHN9 38165935
    878722 8uvs:1F (2.75) BS08 MG N/A N/A Q5SHN9 38165935
    878723 8uvs:1F (2.75) BS09 MG N/A N/A Q5SHN9 38165935
    878724 8uvs:1F (2.75) BS10 MG N/A N/A Q5SHN9 38165935
    878725 8uvs:1G (2.75) BS01 rna N/A N/A Q5SHQ0 38165935
    878726 8uvs:1G (2.75) BS02 rna N/A N/A Q5SHQ0 38165935
    878727 8uvs:1G (2.75) BS03 rna N/A N/A Q5SHQ0 38165935
    878728 8uvs:1G (2.75) BS04 MG N/A N/A Q5SHQ0 38165935
    878729 8uvs:1G (2.75) BS05 MG N/A N/A Q5SHQ0 38165935
    878730 8uvs:1H (2.75) BS01 rna N/A N/A P0DOY8 38165935
    878731 8uvs:1I (2.75) BS01 rna N/A N/A Q5SLQ1 38165935
    878732 8uvs:1N (2.75) BS01 rna N/A N/A P60488 38165935
    878733 8uvs:1N (2.75) BS02 MG N/A N/A P60488 38165935
    878734 8uvs:1N (2.75) BS03 MG N/A N/A P60488 38165935
    878735 8uvs:1O (2.75) BS01 rna N/A N/A Q5SHP8 38165935
    878736 8uvs:1O (2.75) BS02 rna N/A N/A Q5SHP8 38165935
    878737 8uvs:1O (2.75) BS03 MG N/A N/A Q5SHP8 38165935
    878738 8uvs:1O (2.75) BS04 MG N/A N/A Q5SHP8 38165935
    878739 8uvs:1P (2.75) BS01 rna N/A N/A Q5SHQ7 38165935
    878740 8uvs:1P (2.75) BS02 MG N/A N/A Q5SHQ7 38165935
    878741 8uvs:1P (2.75) BS03 MG N/A N/A Q5SHQ7 38165935
    878742 8uvs:1P (2.75) BS04 MG N/A N/A Q5SHQ7 38165935
    878743 8uvs:1P (2.75) BS05 MG N/A N/A Q5SHQ7 38165935
    878744 8uvs:1P (2.75) BS06 MG N/A N/A Q5SHQ7 38165935
    878745 8uvs:1P (2.75) BS07 MG N/A N/A Q5SHQ7 38165935
    878746 8uvs:1P (2.75) BS08 MG N/A N/A Q5SHQ7 38165935
    878747 8uvs:1Q (2.75) BS01 rna N/A N/A P60489 38165935
    878748 8uvs:1Q (2.75) BS02 rna N/A N/A P60489 38165935
    878749 8uvs:1Q (2.75) BS03 rna N/A N/A P60489 38165935
    878750 8uvs:1Q (2.75) BS04 MG N/A N/A P60489 38165935
    878751 8uvs:1Q (2.75) BS05 MG N/A N/A P60489 38165935
    878752 8uvs:1Q (2.75) BS06 MG N/A N/A P60489 38165935
    878753 8uvs:1Q (2.75) BS07 MG N/A N/A P60489 38165935
    878754 8uvs:1R (2.75) BS01 rna N/A N/A Q9Z9H5 38165935
    878755 8uvs:1R (2.75) BS02 MG N/A N/A Q9Z9H5 38165935
    878756 8uvs:1R (2.75) BS03 MG N/A N/A Q9Z9H5 38165935
    878757 8uvs:1S (2.75) BS01 rna N/A N/A Q5SHQ4 38165935
    878758 8uvs:1S (2.75) BS02 rna N/A N/A Q5SHQ4 38165935
    878759 8uvs:1S (2.75) BS03 MG N/A N/A Q5SHQ4 38165935
    878760 8uvs:1S (2.75) BS04 MG N/A N/A Q5SHQ4 38165935
    878761 8uvs:1T (2.75) BS01 rna N/A N/A P60490 38165935
    878762 8uvs:1T (2.75) BS02 rna N/A N/A P60490 38165935
    878763 8uvs:1T (2.75) BS03 MG N/A N/A P60490 38165935
    878764 8uvs:1U (2.75) BS01 rna N/A N/A P60491 38165935
    878765 8uvs:1U (2.75) BS02 MG N/A N/A P60491 38165935
    878766 8uvs:1U (2.75) BS03 MG N/A N/A P60491 38165935
    878767 8uvs:1U (2.75) BS04 MG N/A N/A P60491 38165935
    878768 8uvs:1U (2.75) BS05 MG N/A N/A P60491 38165935
    878769 8uvs:1U (2.75) BS06 MG N/A N/A P60491 38165935
    878770 8uvs:1U (2.75) BS07 MG N/A N/A P60491 38165935
    878771 8uvs:1U (2.75) BS08 MG N/A N/A P60491 38165935
    878772 8uvs:1U (2.75) BS09 MG N/A N/A P60491 38165935
    878773 8uvs:1U (2.75) BS10 MG N/A N/A P60491 38165935
    878774 8uvs:1V (2.75) BS01 rna N/A N/A P60492 38165935
    878775 8uvs:1V (2.75) BS02 MG N/A N/A P60492 38165935
    878776 8uvs:1V (2.75) BS03 MG N/A N/A P60492 38165935
    878777 8uvs:1V (2.75) BS04 MG N/A N/A P60492 38165935
    878778 8uvs:1V (2.75) BS05 MG N/A N/A P60492 38165935
    878779 8uvs:1V (2.75) BS06 MG N/A N/A P60492 38165935
    878780 8uvs:1V (2.75) BS07 MG N/A N/A P60492 38165935
    878781 8uvs:1W (2.75) BS01 rna N/A N/A Q5SHP3 38165935
    878782 8uvs:1W (2.75) BS02 MG N/A N/A Q5SHP3 38165935
    878783 8uvs:1W (2.75) BS03 MG N/A N/A Q5SHP3 38165935
    878784 8uvs:1W (2.75) BS04 MG N/A N/A Q5SHP3 38165935
    878785 8uvs:1X (2.75) BS01 rna N/A N/A Q5SHP0 38165935
    878786 8uvs:1X (2.75) BS02 MG N/A N/A Q5SHP0 38165935
    878787 8uvs:1X (2.75) BS03 MG N/A N/A Q5SHP0 38165935
    878788 8uvs:1X (2.75) BS04 MG N/A N/A Q5SHP0 38165935
    878789 8uvs:1X (2.75) BS05 MG N/A N/A Q5SHP0 38165935
    878790 8uvs:1X (2.75) BS06 MG N/A N/A Q5SHP0 38165935
    878791 8uvs:1Y (2.75) BS01 rna N/A N/A Q5SHP9 38165935
    878792 8uvs:1Y (2.75) BS02 MG N/A N/A Q5SHP9 38165935
    878793 8uvs:1Y (2.75) BS03 ZN N/A N/A Q5SHP9 38165935
    878794 8uvs:1Z (2.75) BS01 rna N/A N/A Q5SHZ1 38165935
    878795 8uvs:1Z (2.75) BS02 rna N/A N/A Q5SHZ1 38165935
    878796 8uvs:1b (2.75) BS01 rna N/A N/A P80371 38165935
    878797 8uvs:1b (2.75) BS02 MG N/A N/A P80371 38165935
    878798 8uvs:1c (2.75) BS01 rna N/A N/A P80372 38165935
    878799 8uvs:1d (2.75) BS01 rna N/A N/A P80373 38165935
    878800 8uvs:1d (2.75) BS02 SF4 N/A N/A P80373 38165935
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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