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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    878401 8uvq:F (3.42) BS03 XO8 N/A N/A P55072 39122922
    878402 8uvr:10 (2.6) BS01 rna N/A N/A P60493 38165935
    878403 8uvr:10 (2.6) BS02 rna N/A N/A P60493 38165935
    878404 8uvr:10 (2.6) BS03 MG N/A N/A P60493 38165935
    878405 8uvr:10 (2.6) BS04 MG N/A N/A P60493 38165935
    878406 8uvr:11 (2.6) BS01 rna N/A N/A P60494 38165935
    878407 8uvr:11 (2.6) BS02 MG N/A N/A P60494 38165935
    878408 8uvr:12 (2.6) BS01 rna N/A N/A Q5SHP6 38165935
    878409 8uvr:12 (2.6) BS02 MG N/A N/A Q5SHP6 38165935
    878410 8uvr:13 (2.6) BS01 rna N/A N/A Q5SHQ6 38165935
    878411 8uvr:13 (2.6) BS02 rna N/A N/A Q5SHQ6 38165935
    878412 8uvr:13 (2.6) BS03 MG N/A N/A Q5SHQ6 38165935
    878413 8uvr:13 (2.6) BS04 MG N/A N/A Q5SHQ6 38165935
    878414 8uvr:14 (2.6) BS01 rna N/A N/A Q5SJE1 38165935
    878415 8uvr:14 (2.6) BS02 ZN N/A N/A Q5SJE1 38165935
    878416 8uvr:15 (2.6) BS01 rna N/A N/A P80339 38165935
    878417 8uvr:15 (2.6) BS02 MG N/A N/A P80339 38165935
    878418 8uvr:15 (2.6) BS03 MG N/A N/A P80339 38165935
    878419 8uvr:15 (2.6) BS04 MG N/A N/A P80339 38165935
    878420 8uvr:15 (2.6) BS05 MG N/A N/A P80339 38165935
    878421 8uvr:15 (2.6) BS06 ZN N/A N/A P80339 38165935
    878422 8uvr:16 (2.6) BS01 rna N/A N/A P35871 38165935
    878423 8uvr:16 (2.6) BS02 MG N/A N/A P35871 38165935
    878424 8uvr:16 (2.6) BS03 ZN N/A N/A P35871 38165935
    878425 8uvr:17 (2.6) BS01 rna N/A N/A P80340 38165935
    878426 8uvr:17 (2.6) BS02 MG N/A N/A P80340 38165935
    878427 8uvr:17 (2.6) BS03 MG N/A N/A P80340 38165935
    878428 8uvr:18 (2.6) BS01 rna N/A N/A Q5SKU1 38165935
    878429 8uvr:18 (2.6) BS02 MG N/A N/A Q5SKU1 38165935
    878430 8uvr:18 (2.6) BS03 MG N/A N/A Q5SKU1 38165935
    878431 8uvr:18 (2.6) BS04 MG N/A N/A Q5SKU1 38165935
    878432 8uvr:19 (2.6) BS01 rna N/A N/A Q5SHR2 38165935
    878433 8uvr:19 (2.6) BS02 ZN N/A N/A Q5SHR2 38165935
    878434 8uvr:1D (2.6) BS01 rna N/A N/A P60405 38165935
    878435 8uvr:1D (2.6) BS02 rna N/A N/A P60405 38165935
    878436 8uvr:1D (2.6) BS03 MG N/A N/A P60405 38165935
    878437 8uvr:1D (2.6) BS04 MG N/A N/A P60405 38165935
    878438 8uvr:1D (2.6) BS05 MG N/A N/A P60405 38165935
    878439 8uvr:1D (2.6) BS06 MG N/A N/A P60405 38165935
    878440 8uvr:1D (2.6) BS07 MG N/A N/A P60405 38165935
    878441 8uvr:1D (2.6) BS08 MG N/A N/A P60405 38165935
    878442 8uvr:1D (2.6) BS09 MG N/A N/A P60405 38165935
    878443 8uvr:1D (2.6) BS10 MG N/A N/A P60405 38165935
    878444 8uvr:1D (2.6) BS11 MG N/A N/A P60405 38165935
    878445 8uvr:1D (2.6) BS12 MG N/A N/A P60405 38165935
    878446 8uvr:1D (2.6) BS13 MG N/A N/A P60405 38165935
    878447 8uvr:1E (2.6) BS01 rna N/A N/A Q5SHN8 38165935
    878448 8uvr:1E (2.6) BS02 MG N/A N/A Q5SHN8 38165935
    878449 8uvr:1E (2.6) BS03 MG N/A N/A Q5SHN8 38165935
    878450 8uvr:1E (2.6) BS04 MG N/A N/A Q5SHN8 38165935
    878451 8uvr:1E (2.6) BS05 MG N/A N/A Q5SHN8 38165935
    878452 8uvr:1E (2.6) BS06 MG N/A N/A Q5SHN8 38165935
    878453 8uvr:1F (2.6) BS01 rna N/A N/A Q5SHN9 38165935
    878454 8uvr:1F (2.6) BS02 MG N/A N/A Q5SHN9 38165935
    878455 8uvr:1F (2.6) BS03 MG N/A N/A Q5SHN9 38165935
    878456 8uvr:1F (2.6) BS04 MG N/A N/A Q5SHN9 38165935
    878457 8uvr:1F (2.6) BS05 MG N/A N/A Q5SHN9 38165935
    878458 8uvr:1F (2.6) BS06 MG N/A N/A Q5SHN9 38165935
    878459 8uvr:1F (2.6) BS07 MG N/A N/A Q5SHN9 38165935
    878460 8uvr:1F (2.6) BS08 MG N/A N/A Q5SHN9 38165935
    878461 8uvr:1F (2.6) BS09 MG N/A N/A Q5SHN9 38165935
    878462 8uvr:1F (2.6) BS10 MG N/A N/A Q5SHN9 38165935
    878463 8uvr:1G (2.6) BS01 rna N/A N/A Q5SHQ0 38165935
    878464 8uvr:1G (2.6) BS02 rna N/A N/A Q5SHQ0 38165935
    878465 8uvr:1G (2.6) BS03 MG N/A N/A Q5SHQ0 38165935
    878466 8uvr:1H (2.6) BS01 rna N/A N/A P0DOY8 38165935
    878467 8uvr:1I (2.6) BS01 rna N/A N/A Q5SLQ1 38165935
    878468 8uvr:1N (2.6) BS01 rna N/A N/A P60488 38165935
    878469 8uvr:1N (2.6) BS02 MG N/A N/A P60488 38165935
    878470 8uvr:1N (2.6) BS03 MG N/A N/A P60488 38165935
    878471 8uvr:1N (2.6) BS04 MG N/A N/A P60488 38165935
    878472 8uvr:1O (2.6) BS01 rna N/A N/A Q5SHP8 38165935
    878473 8uvr:1O (2.6) BS02 rna N/A N/A Q5SHP8 38165935
    878474 8uvr:1O (2.6) BS03 MG N/A N/A Q5SHP8 38165935
    878475 8uvr:1P (2.6) BS01 rna N/A N/A Q5SHQ7 38165935
    878476 8uvr:1P (2.6) BS02 MG N/A N/A Q5SHQ7 38165935
    878477 8uvr:1P (2.6) BS03 MG N/A N/A Q5SHQ7 38165935
    878478 8uvr:1P (2.6) BS04 MG N/A N/A Q5SHQ7 38165935
    878479 8uvr:1P (2.6) BS05 MG N/A N/A Q5SHQ7 38165935
    878480 8uvr:1P (2.6) BS06 MG N/A N/A Q5SHQ7 38165935
    878481 8uvr:1P (2.6) BS07 MG N/A N/A Q5SHQ7 38165935
    878482 8uvr:1Q (2.6) BS01 rna N/A N/A P60489 38165935
    878483 8uvr:1Q (2.6) BS02 rna N/A N/A P60489 38165935
    878484 8uvr:1Q (2.6) BS03 rna N/A N/A P60489 38165935
    878485 8uvr:1Q (2.6) BS04 MG N/A N/A P60489 38165935
    878486 8uvr:1Q (2.6) BS05 MG N/A N/A P60489 38165935
    878487 8uvr:1Q (2.6) BS06 MG N/A N/A P60489 38165935
    878488 8uvr:1Q (2.6) BS07 MG N/A N/A P60489 38165935
    878489 8uvr:1R (2.6) BS01 rna N/A N/A Q9Z9H5 38165935
    878490 8uvr:1R (2.6) BS02 MG N/A N/A Q9Z9H5 38165935
    878491 8uvr:1R (2.6) BS03 MG N/A N/A Q9Z9H5 38165935
    878492 8uvr:1S (2.6) BS01 rna N/A N/A Q5SHQ4 38165935
    878493 8uvr:1S (2.6) BS02 rna N/A N/A Q5SHQ4 38165935
    878494 8uvr:1S (2.6) BS03 MG N/A N/A Q5SHQ4 38165935
    878495 8uvr:1S (2.6) BS04 MG N/A N/A Q5SHQ4 38165935
    878496 8uvr:1T (2.6) BS01 rna N/A N/A P60490 38165935
    878497 8uvr:1T (2.6) BS02 rna N/A N/A P60490 38165935
    878498 8uvr:1T (2.6) BS03 MG N/A N/A P60490 38165935
    878499 8uvr:1U (2.6) BS01 rna N/A N/A P60491 38165935
    878500 8uvr:1U (2.6) BS02 MG N/A N/A P60491 38165935
    878501 8uvr:1U (2.6) BS03 MG N/A N/A P60491 38165935
    878502 8uvr:1U (2.6) BS04 MG N/A N/A P60491 38165935
    878503 8uvr:1U (2.6) BS05 MG N/A N/A P60491 38165935
    878504 8uvr:1U (2.6) BS06 MG N/A N/A P60491 38165935
    878505 8uvr:1U (2.6) BS07 MG N/A N/A P60491 38165935
    878506 8uvr:1U (2.6) BS08 MG N/A N/A P60491 38165935
    878507 8uvr:1U (2.6) BS09 MG N/A N/A P60491 38165935
    878508 8uvr:1U (2.6) BS10 MG N/A N/A P60491 38165935
    878509 8uvr:1U (2.6) BS11 MG N/A N/A P60491 38165935
    878510 8uvr:1V (2.6) BS01 rna N/A N/A P60492 38165935
    878511 8uvr:1V (2.6) BS02 MG N/A N/A P60492 38165935
    878512 8uvr:1V (2.6) BS03 MG N/A N/A P60492 38165935
    878513 8uvr:1V (2.6) BS04 MG N/A N/A P60492 38165935
    878514 8uvr:1V (2.6) BS05 MG N/A N/A P60492 38165935
    878515 8uvr:1V (2.6) BS06 MG N/A N/A P60492 38165935
    878516 8uvr:1V (2.6) BS07 MG N/A N/A P60492 38165935
    878517 8uvr:1W (2.6) BS01 rna N/A N/A Q5SHP3 38165935
    878518 8uvr:1W (2.6) BS02 MG N/A N/A Q5SHP3 38165935
    878519 8uvr:1W (2.6) BS03 MG N/A N/A Q5SHP3 38165935
    878520 8uvr:1W (2.6) BS04 MG N/A N/A Q5SHP3 38165935
    878521 8uvr:1W (2.6) BS05 MG N/A N/A Q5SHP3 38165935
    878522 8uvr:1W (2.6) BS06 MG N/A N/A Q5SHP3 38165935
    878523 8uvr:1X (2.6) BS01 rna N/A N/A Q5SHP0 38165935
    878524 8uvr:1X (2.6) BS02 MG N/A N/A Q5SHP0 38165935
    878525 8uvr:1X (2.6) BS03 MG N/A N/A Q5SHP0 38165935
    878526 8uvr:1X (2.6) BS04 MG N/A N/A Q5SHP0 38165935
    878527 8uvr:1X (2.6) BS05 MG N/A N/A Q5SHP0 38165935
    878528 8uvr:1X (2.6) BS06 MG N/A N/A Q5SHP0 38165935
    878529 8uvr:1Y (2.6) BS01 rna N/A N/A Q5SHP9 38165935
    878530 8uvr:1Y (2.6) BS02 MG N/A N/A Q5SHP9 38165935
    878531 8uvr:1Y (2.6) BS03 ZN N/A N/A Q5SHP9 38165935
    878532 8uvr:1Z (2.6) BS01 rna N/A N/A Q5SHZ1 38165935
    878533 8uvr:1Z (2.6) BS02 rna N/A N/A Q5SHZ1 38165935
    878534 8uvr:1b (2.6) BS01 rna N/A N/A P80371 38165935
    878535 8uvr:1c (2.6) BS01 rna N/A N/A P80372 38165935
    878536 8uvr:1d (2.6) BS01 rna N/A N/A P80373 38165935
    878537 8uvr:1d (2.6) BS02 SF4 N/A N/A P80373 38165935
    878538 8uvr:1e (2.6) BS01 rna N/A N/A Q5SHQ5 38165935
    878539 8uvr:1e (2.6) BS02 SCM N/A N/A Q5SHQ5 38165935
    878540 8uvr:1f (2.6) BS01 rna N/A N/A Q5SLP8 38165935
    878541 8uvr:1f (2.6) BS02 MG N/A N/A Q5SLP8 38165935
    878542 8uvr:1f (2.6) BS03 MG N/A N/A Q5SLP8 38165935
    878543 8uvr:1g (2.6) BS01 rna N/A N/A P17291 38165935
    878544 8uvr:1g (2.6) BS02 rna N/A N/A P17291 38165935
    878545 8uvr:1h (2.6) BS01 rna N/A N/A P0DOY9 38165935
    878546 8uvr:1i (2.6) BS01 rna N/A N/A P80374 38165935
    878547 8uvr:1i (2.6) BS02 rna N/A N/A P80374 38165935
    878548 8uvr:1j (2.6) BS01 rna N/A N/A Q5SHN7 38165935
    878549 8uvr:1k (2.6) BS01 rna N/A N/A P80376 38165935
    878550 8uvr:1k (2.6) BS02 MG N/A N/A P80376 38165935
    878551 8uvr:1l (2.6) BS01 rna N/A N/A Q5SHN3 38165935
    878552 8uvr:1l (2.6) BS02 MG N/A N/A Q5SHN3 38165935
    878553 8uvr:1m (2.6) BS01 rna N/A N/A P80377 38165935
    878554 8uvr:1m (2.6) BS02 rna N/A N/A P80377 38165935
    878555 8uvr:1m (2.6) BS03 rna N/A N/A P80377 38165935
    878556 8uvr:1m (2.6) BS04 MG N/A N/A P80377 38165935
    878557 8uvr:1n (2.6) BS01 rna N/A N/A P0DOY6 38165935
    878558 8uvr:1n (2.6) BS02 MG N/A N/A P0DOY6 38165935
    878559 8uvr:1n (2.6) BS03 ZN N/A N/A P0DOY6 38165935
    878560 8uvr:1o (2.6) BS01 rna N/A N/A Q5SJ76 38165935
    878561 8uvr:1o (2.6) BS02 rna N/A N/A Q5SJ76 38165935
    878562 8uvr:1p (2.6) BS01 rna N/A N/A Q5SJH3 38165935
    878563 8uvr:1q (2.6) BS01 rna N/A N/A P0DOY7 38165935
    878564 8uvr:1r (2.6) BS01 rna N/A N/A Q5SLQ0 38165935
    878565 8uvr:1s (2.6) BS01 rna N/A N/A Q5SHP2 38165935
    878566 8uvr:1t (2.6) BS01 rna N/A N/A P80380 38165935
    878567 8uvr:20 (2.6) BS01 rna N/A N/A P60493 38165935
    878568 8uvr:20 (2.6) BS02 rna N/A N/A P60493 38165935
    878569 8uvr:20 (2.6) BS03 rna N/A N/A P60493 38165935
    878570 8uvr:21 (2.6) BS01 rna N/A N/A P60494 38165935
    878571 8uvr:21 (2.6) BS02 MG N/A N/A P60494 38165935
    878572 8uvr:22 (2.6) BS01 rna N/A N/A Q5SHP6 38165935
    878573 8uvr:23 (2.6) BS01 rna N/A N/A Q5SHQ6 38165935
    878574 8uvr:23 (2.6) BS02 rna N/A N/A Q5SHQ6 38165935
    878575 8uvr:23 (2.6) BS03 MG N/A N/A Q5SHQ6 38165935
    878576 8uvr:24 (2.6) BS01 rna N/A N/A Q5SJE1 38165935
    878577 8uvr:24 (2.6) BS02 ZN N/A N/A Q5SJE1 38165935
    878578 8uvr:25 (2.6) BS01 rna N/A N/A P80339 38165935
    878579 8uvr:25 (2.6) BS02 MG N/A N/A P80339 38165935
    878580 8uvr:25 (2.6) BS03 ZN N/A N/A P80339 38165935
    878581 8uvr:26 (2.6) BS01 rna N/A N/A P35871 38165935
    878582 8uvr:26 (2.6) BS02 ZN N/A N/A P35871 38165935
    878583 8uvr:27 (2.6) BS01 rna N/A N/A P80340 38165935
    878584 8uvr:27 (2.6) BS02 MG N/A N/A P80340 38165935
    878585 8uvr:28 (2.6) BS01 rna N/A N/A Q5SKU1 38165935
    878586 8uvr:28 (2.6) BS02 MG N/A N/A Q5SKU1 38165935
    878587 8uvr:29 (2.6) BS01 rna N/A N/A Q5SHR2 38165935
    878588 8uvr:29 (2.6) BS02 MG N/A N/A Q5SHR2 38165935
    878589 8uvr:29 (2.6) BS03 ZN N/A N/A Q5SHR2 38165935
    878590 8uvr:2D (2.6) BS01 rna N/A N/A P60405 38165935
    878591 8uvr:2D (2.6) BS02 rna N/A N/A P60405 38165935
    878592 8uvr:2D (2.6) BS03 MG N/A N/A P60405 38165935
    878593 8uvr:2D (2.6) BS04 MG N/A N/A P60405 38165935
    878594 8uvr:2D (2.6) BS05 MG N/A N/A P60405 38165935
    878595 8uvr:2D (2.6) BS06 MG N/A N/A P60405 38165935
    878596 8uvr:2D (2.6) BS07 MG N/A N/A P60405 38165935
    878597 8uvr:2E (2.6) BS01 rna N/A N/A Q5SHN8 38165935
    878598 8uvr:2E (2.6) BS02 MG N/A N/A Q5SHN8 38165935
    878599 8uvr:2F (2.6) BS01 rna N/A N/A Q5SHN9 38165935
    878600 8uvr:2F (2.6) BS02 MG N/A N/A Q5SHN9 38165935
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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