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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    878001 8uu6:R (3.3) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    878002 8uu6:S (3.3) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    878003 8uu6:T (3.3) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    878004 8uu6:U (3.3) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    878005 8uu6:V (3.3) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    878006 8uu6:W (3.3) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    878007 8uu6:Y (3.3) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    878008 8uu6:Z (3.3) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    878009 8uu6:b (3.3) BS01 rna N/A GO:0003735 ... N/A 38407413
    878010 8uu6:c (3.3) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    878011 8uu6:d (3.3) BS01 rna N/A GO:0003723 ... N/A 38407413
    878012 8uu6:e (3.3) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    878013 8uu6:f (3.3) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    878014 8uu6:g (3.3) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    878015 8uu6:h (3.3) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    878016 8uu6:i (3.3) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    878017 8uu6:j (3.3) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    878018 8uu6:k (3.3) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    878019 8uu6:l (3.3) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    878020 8uu6:m (3.3) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    878021 8uu6:n (3.3) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    878022 8uu6:n (3.3) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    878023 8uu6:o (3.3) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    878024 8uu6:o (3.3) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    878025 8uu6:p (3.3) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    878026 8uu6:q (3.3) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    878027 8uu6:q (3.3) BS02 MG ? GO:0003735 ... A0A0U5ADR4 38407413
    878028 8uu6:r (3.3) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    878029 8uu6:s (3.3) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    878030 8uu6:t (3.3) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    878031 8uu7:1 (3.2) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    878032 8uu7:2 (3.2) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    878033 8uu7:3 (3.2) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    878034 8uu7:4 (3.2) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    878035 8uu7:4 (3.2) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    878036 8uu7:5 (3.2) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    878037 8uu7:5 (3.2) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    878038 8uu7:6 (3.2) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    878039 8uu7:7 (3.2) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    878040 8uu7:8 (3.2) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    878041 8uu7:8 (3.2) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    878042 8uu7:C (3.2) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    878043 8uu7:D (3.2) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    878044 8uu7:E (3.2) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    878045 8uu7:F (3.2) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    878046 8uu7:F (3.2) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    878047 8uu7:G (3.2) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    878048 8uu7:L (3.2) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    878049 8uu7:M (3.2) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    878050 8uu7:M (3.2) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    878051 8uu7:N (3.2) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    878052 8uu7:O (3.2) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    878053 8uu7:P (3.2) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    878054 8uu7:Q (3.2) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    878055 8uu7:Q (3.2) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    878056 8uu7:R (3.2) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    878057 8uu7:R (3.2) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    878058 8uu7:S (3.2) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    878059 8uu7:T (3.2) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    878060 8uu7:U (3.2) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    878061 8uu7:V (3.2) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    878062 8uu7:W (3.2) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    878063 8uu7:Y (3.2) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    878064 8uu7:Y (3.2) BS02 rna ? GO:0003735 ... A0A660JMC7 38407413
    878065 8uu7:Z (3.2) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    878066 8uu7:b (3.2) BS01 rna N/A GO:0003735 ... N/A 38407413
    878067 8uu7:c (3.2) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    878068 8uu7:d (3.2) BS01 rna N/A GO:0003723 ... N/A 38407413
    878069 8uu7:e (3.2) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    878070 8uu7:f (3.2) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    878071 8uu7:g (3.2) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    878072 8uu7:g (3.2) BS02 rna ? GO:0000028 ... A0A660JPE1 38407413
    878073 8uu7:h (3.2) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    878074 8uu7:i (3.2) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    878075 8uu7:j (3.2) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    878076 8uu7:j (3.2) BS02 MG ? GO:0000049 ... A0A0U5A730 38407413
    878077 8uu7:k (3.2) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    878078 8uu7:l (3.2) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    878079 8uu7:m (3.2) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    878080 8uu7:n (3.2) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    878081 8uu7:n (3.2) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    878082 8uu7:o (3.2) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    878083 8uu7:o (3.2) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    878084 8uu7:p (3.2) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    878085 8uu7:q (3.2) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    878086 8uu7:r (3.2) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    878087 8uu7:s (3.2) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    878088 8uu7:t (3.2) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    878089 8uu7:v (3.2) BS01 rna ? GO:0003924 ... Q8Y8Y0 38407413
    878090 8uu7:w (3.2) BS01 rna ? GO:0005737 ... A0A660JMK7 38407413
    878091 8uu8:1 (3.1) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    878092 8uu8:2 (3.1) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    878093 8uu8:3 (3.1) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    878094 8uu8:4 (3.1) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    878095 8uu8:4 (3.1) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    878096 8uu8:5 (3.1) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    878097 8uu8:5 (3.1) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    878098 8uu8:6 (3.1) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    878099 8uu8:7 (3.1) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    878100 8uu8:8 (3.1) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    878101 8uu8:8 (3.1) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    878102 8uu8:C (3.1) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    878103 8uu8:C (3.1) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    878104 8uu8:D (3.1) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    878105 8uu8:E (3.1) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    878106 8uu8:F (3.1) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    878107 8uu8:F (3.1) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    878108 8uu8:G (3.1) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    878109 8uu8:H (3.1) BS01 rna ? GO:0003735 ... A0A660JML6 38407413
    878110 8uu8:I (3.1) BS01 rna ? GO:0003735 ... A0A0U5A6T9 38407413
    878111 8uu8:L (3.1) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    878112 8uu8:M (3.1) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    878113 8uu8:M (3.1) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    878114 8uu8:N (3.1) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    878115 8uu8:O (3.1) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    878116 8uu8:O (3.1) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    878117 8uu8:P (3.1) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    878118 8uu8:Q (3.1) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    878119 8uu8:Q (3.1) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    878120 8uu8:R (3.1) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    878121 8uu8:R (3.1) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    878122 8uu8:S (3.1) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    878123 8uu8:T (3.1) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    878124 8uu8:U (3.1) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    878125 8uu8:V (3.1) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    878126 8uu8:W (3.1) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    878127 8uu8:Y (3.1) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    878128 8uu8:Y (3.1) BS02 rna ? GO:0003735 ... A0A660JMC7 38407413
    878129 8uu8:Z (3.1) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    878130 8uu8:b (3.1) BS01 rna N/A GO:0003735 ... N/A 38407413
    878131 8uu8:b (3.1) BS02 MG N/A GO:0003735 ... N/A 38407413
    878132 8uu8:c (3.1) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    878133 8uu8:d (3.1) BS01 rna N/A GO:0003723 ... N/A 38407413
    878134 8uu8:e (3.1) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    878135 8uu8:f (3.1) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    878136 8uu8:g (3.1) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    878137 8uu8:h (3.1) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    878138 8uu8:i (3.1) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    878139 8uu8:j (3.1) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    878140 8uu8:k (3.1) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    878141 8uu8:l (3.1) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    878142 8uu8:m (3.1) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    878143 8uu8:n (3.1) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    878144 8uu8:n (3.1) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    878145 8uu8:o (3.1) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    878146 8uu8:o (3.1) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    878147 8uu8:p (3.1) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    878148 8uu8:q (3.1) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    878149 8uu8:r (3.1) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    878150 8uu8:s (3.1) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    878151 8uu8:t (3.1) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    878152 8uu8:v (3.1) BS01 rna ? GO:0003924 ... Q8Y8Y0 38407413
    878153 8uu8:v (3.1) BS02 MG ? GO:0003924 ... Q8Y8Y0 38407413
    878154 8uu9:1 (3.1) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    878155 8uu9:2 (3.1) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    878156 8uu9:3 (3.1) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    878157 8uu9:4 (3.1) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    878158 8uu9:4 (3.1) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    878159 8uu9:5 (3.1) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    878160 8uu9:5 (3.1) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    878161 8uu9:6 (3.1) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    878162 8uu9:7 (3.1) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    878163 8uu9:8 (3.1) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    878164 8uu9:8 (3.1) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    878165 8uu9:C (3.1) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    878166 8uu9:C (3.1) BS02 rna ? GO:0002181 ... A0A0U5A742 38407413
    878167 8uu9:C (3.1) BS03 MG ? GO:0002181 ... A0A0U5A742 38407413
    878168 8uu9:D (3.1) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    878169 8uu9:E (3.1) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    878170 8uu9:F (3.1) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    878171 8uu9:F (3.1) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    878172 8uu9:G (3.1) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    878173 8uu9:L (3.1) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    878174 8uu9:M (3.1) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    878175 8uu9:M (3.1) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    878176 8uu9:N (3.1) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    878177 8uu9:O (3.1) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    878178 8uu9:O (3.1) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    878179 8uu9:P (3.1) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    878180 8uu9:Q (3.1) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    878181 8uu9:Q (3.1) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    878182 8uu9:R (3.1) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    878183 8uu9:S (3.1) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    878184 8uu9:T (3.1) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    878185 8uu9:U (3.1) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    878186 8uu9:V (3.1) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    878187 8uu9:W (3.1) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    878188 8uu9:Y (3.1) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    878189 8uu9:Y (3.1) BS02 rna ? GO:0003735 ... A0A660JMC7 38407413
    878190 8uu9:Z (3.1) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    878191 8uu9:b (3.1) BS01 rna ? GO:0003735 ... Q92B01 38407413
    878192 8uu9:c (3.1) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    878193 8uu9:d (3.1) BS01 rna ? GO:0003723 ... Q92BB2 38407413
    878194 8uu9:e (3.1) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    878195 8uu9:f (3.1) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    878196 8uu9:g (3.1) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    878197 8uu9:h (3.1) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    878198 8uu9:i (3.1) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    878199 8uu9:j (3.1) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    878200 8uu9:k (3.1) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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