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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    877801 8utp:K (3.2) BS02 ANP ? N/A Q12756 38956021
    877802 8utp:N (3.2) BS01 ANP ? N/A Q12756 38956021
    877803 8utp:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877804 8utq:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877805 8utq:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877806 8utq:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877807 8utq:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877808 8utq:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877809 8utq:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877810 8utq:K (3.1) BS01 MG ? N/A Q12756 38956021
    877811 8utq:K (3.1) BS02 ANP ? N/A Q12756 38956021
    877812 8utr:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877813 8utr:A (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877814 8utr:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877815 8utr:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877816 8utr:K (3.3) BS01 ADP ? N/A Q12756 38956021
    877817 8uts:A (2.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877818 8uts:B (2.7) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877819 8uts:B (2.7) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877820 8utt:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877821 8utt:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877822 8utt:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877823 8utt:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877824 8utt:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877825 8utt:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877826 8utt:K (3.1) BS01 MG ? N/A Q12756 38956021
    877827 8utt:K (3.1) BS02 ANP ? N/A Q12756 38956021
    877828 8utt:N (3.1) BS01 ANP ? N/A Q12756 38956021
    877829 8utt:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877830 8utu:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877831 8utu:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877832 8utu:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877833 8utu:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877834 8utu:K (3.0) BS01 MG ? N/A Q12756 38956021
    877835 8utu:K (3.0) BS02 ANP ? N/A Q12756 38956021
    877836 8utv:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877837 8utv:A (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877838 8utv:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877839 8utv:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877840 8utv:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877841 8utv:E (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877842 8utv:K (3.0) BS01 ADP ? N/A Q12756 38956021
    877843 8utw:A (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877844 8utw:A (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877845 8utw:B (3.4) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877846 8utw:B (3.4) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877847 8uty:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877848 8uty:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877849 8uty:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877850 8uty:E (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877851 8uty:I (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877852 8uty:I (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877853 8uty:K (3.3) BS01 MG ? N/A Q12756 38956021
    877854 8uty:K (3.3) BS02 ANP ? N/A Q12756 38956021
    877855 8uty:N (3.3) BS01 ANP ? N/A Q12756 38956021
    877856 8uty:S (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877857 8uu4:1 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    877858 8uu4:2 (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    877859 8uu4:3 (3.0) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    877860 8uu4:4 (3.0) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    877861 8uu4:4 (3.0) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    877862 8uu4:5 (3.0) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    877863 8uu4:5 (3.0) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    877864 8uu4:6 (3.0) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    877865 8uu4:7 (3.0) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    877866 8uu4:8 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    877867 8uu4:8 (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    877868 8uu4:C (3.0) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    877869 8uu4:D (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    877870 8uu4:E (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    877871 8uu4:F (3.0) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    877872 8uu4:F (3.0) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    877873 8uu4:G (3.0) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    877874 8uu4:L (3.0) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    877875 8uu4:M (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    877876 8uu4:M (3.0) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    877877 8uu4:N (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    877878 8uu4:O (3.0) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    877879 8uu4:O (3.0) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    877880 8uu4:P (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    877881 8uu4:Q (3.0) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    877882 8uu4:Q (3.0) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    877883 8uu4:R (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    877884 8uu4:R (3.0) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    877885 8uu4:S (3.0) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    877886 8uu4:T (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    877887 8uu4:U (3.0) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    877888 8uu4:V (3.0) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    877889 8uu4:W (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    877890 8uu4:Y (3.0) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    877891 8uu4:Y (3.0) BS02 rna ? GO:0003735 ... A0A660JMC7 38407413
    877892 8uu4:Z (3.0) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    877893 8uu4:b (3.0) BS01 rna N/A GO:0003735 ... N/A 38407413
    877894 8uu4:c (3.0) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    877895 8uu4:d (3.0) BS01 rna N/A GO:0003723 ... N/A 38407413
    877896 8uu4:e (3.0) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    877897 8uu4:f (3.0) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    877898 8uu4:g (3.0) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    877899 8uu4:h (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    877900 8uu4:i (3.0) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    877901 8uu4:j (3.0) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    877902 8uu4:k (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    877903 8uu4:l (3.0) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    877904 8uu4:m (3.0) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    877905 8uu4:n (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    877906 8uu4:n (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    877907 8uu4:o (3.0) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    877908 8uu4:o (3.0) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    877909 8uu4:p (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    877910 8uu4:q (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    877911 8uu4:r (3.0) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    877912 8uu4:s (3.0) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    877913 8uu4:t (3.0) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    877914 8uu4:w (3.0) BS01 rna ? GO:0005737 ... A0A660JMK7 38407413
    877915 8uu5:1 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    877916 8uu5:2 (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    877917 8uu5:2 (3.0) BS02 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    877918 8uu5:3 (3.0) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    877919 8uu5:4 (3.0) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    877920 8uu5:4 (3.0) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    877921 8uu5:5 (3.0) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    877922 8uu5:5 (3.0) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    877923 8uu5:6 (3.0) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    877924 8uu5:7 (3.0) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    877925 8uu5:8 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    877926 8uu5:8 (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    877927 8uu5:C (3.0) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    877928 8uu5:C (3.0) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    877929 8uu5:D (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    877930 8uu5:E (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    877931 8uu5:F (3.0) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    877932 8uu5:F (3.0) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    877933 8uu5:G (3.0) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    877934 8uu5:L (3.0) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    877935 8uu5:M (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    877936 8uu5:M (3.0) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    877937 8uu5:N (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    877938 8uu5:O (3.0) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    877939 8uu5:O (3.0) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    877940 8uu5:P (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    877941 8uu5:Q (3.0) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    877942 8uu5:Q (3.0) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    877943 8uu5:R (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    877944 8uu5:R (3.0) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    877945 8uu5:S (3.0) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    877946 8uu5:T (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    877947 8uu5:U (3.0) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    877948 8uu5:V (3.0) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    877949 8uu5:W (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    877950 8uu5:Y (3.0) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    877951 8uu5:Z (3.0) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    877952 8uu5:b (3.0) BS01 rna N/A GO:0003735 ... N/A 38407413
    877953 8uu5:c (3.0) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    877954 8uu5:d (3.0) BS01 rna N/A GO:0003723 ... N/A 38407413
    877955 8uu5:e (3.0) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    877956 8uu5:f (3.0) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    877957 8uu5:g (3.0) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    877958 8uu5:h (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    877959 8uu5:i (3.0) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    877960 8uu5:i (3.0) BS02 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    877961 8uu5:j (3.0) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    877962 8uu5:k (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    877963 8uu5:l (3.0) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    877964 8uu5:m (3.0) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    877965 8uu5:m (3.0) BS02 MG ? GO:0000049 ... A0A0U5ARJ0 38407413
    877966 8uu5:n (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    877967 8uu5:n (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    877968 8uu5:o (3.0) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    877969 8uu5:o (3.0) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    877970 8uu5:p (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    877971 8uu5:q (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    877972 8uu5:r (3.0) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    877973 8uu5:s (3.0) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    877974 8uu5:t (3.0) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    877975 8uu5:t (3.0) BS02 MG ? GO:0003723 ... A0A660JML5 38407413
    877976 8uu6:1 (3.3) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    877977 8uu6:2 (3.3) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    877978 8uu6:3 (3.3) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    877979 8uu6:4 (3.3) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    877980 8uu6:4 (3.3) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    877981 8uu6:5 (3.3) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    877982 8uu6:5 (3.3) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    877983 8uu6:6 (3.3) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    877984 8uu6:7 (3.3) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    877985 8uu6:8 (3.3) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    877986 8uu6:8 (3.3) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    877987 8uu6:C (3.3) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    877988 8uu6:C (3.3) BS02 rna ? GO:0002181 ... A0A0U5A742 38407413
    877989 8uu6:D (3.3) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    877990 8uu6:E (3.3) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    877991 8uu6:F (3.3) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    877992 8uu6:F (3.3) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    877993 8uu6:G (3.3) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    877994 8uu6:L (3.3) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    877995 8uu6:M (3.3) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    877996 8uu6:N (3.3) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    877997 8uu6:O (3.3) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    877998 8uu6:P (3.3) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    877999 8uu6:Q (3.3) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    878000 8uu6:Q (3.3) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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