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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    877601 8urx:h (6.6) BS01 rna ? GO:0000027 ... P60422 39117885
    877602 8urx:i (6.6) BS01 rna N/A N/A N/A 39117885
    877603 8urx:j (6.6) BS01 rna ? GO:0000027 ... P60438 39117885
    877604 8urx:k (6.6) BS01 rna N/A N/A N/A 39117885
    877605 8urx:l (6.6) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    877606 8urx:m (6.6) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    877607 8urx:n (6.6) BS01 rna N/A N/A N/A 39117885
    877608 8urx:n (6.6) BS02 rna N/A N/A N/A 39117885
    877609 8urx:n (6.6) BS03 rna N/A N/A N/A 39117885
    877610 8urx:o (6.6) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    877611 8urx:p (6.6) BS01 rna ? GO:0002181 ... C3SR17 39117885
    877612 8urx:q (6.6) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    877613 8urx:r (6.6) BS01 rna N/A N/A N/A 39117885
    877614 8urx:s (6.6) BS01 rna N/A N/A N/A 39117885
    877615 8urx:t (6.6) BS01 rna ? GO:0003735 ... S1NW45 39117885
    877616 8urx:t (6.6) BS02 rna ? GO:0003735 ... S1NW45 39117885
    877617 8urx:u (6.6) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    877618 8urx:v (6.6) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    877619 8urx:v (6.6) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    877620 8urx:w (6.6) BS01 rna N/A N/A N/A 39117885
    877621 8urx:x (6.6) BS01 rna N/A N/A N/A 39117885
    877622 8urx:x (6.6) BS02 rna N/A N/A N/A 39117885
    877623 8urx:y (6.6) BS01 rna N/A N/A N/A 39117885
    877624 8urx:z (6.6) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    877625 8ury:0 (3.1) BS01 rna ? GO:0003735 ... C3SSG2 39117885
    877626 8ury:1 (3.1) BS01 rna ? GO:0002181 ... P61175 39117885
    877627 8ury:2 (3.1) BS01 rna ? GO:0000027 ... C3SQV2 39117885
    877628 8ury:3 (3.1) BS01 rna ? GO:0005829 ... C3SQZ7 39117885
    877629 8ury:4 (3.1) BS01 rna ? GO:0000027 ... P68919 39117885
    877630 8ury:9 (3.1) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    877631 8ury:AA (3.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877632 8ury:AA (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877633 8ury:AA (3.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877634 8ury:AB (3.1) BS01 dna ? GO:0001073 ... C3SK02 39117885
    877635 8ury:AE (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877636 8ury:AE (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877637 8ury:AE (3.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877638 8ury:AE (3.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877639 8ury:AE (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877640 8ury:AE (3.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877641 8ury:C (3.1) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    877642 8ury:E (3.1) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    877643 8ury:F (3.1) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    877644 8ury:G (3.1) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    877645 8ury:I (3.1) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    877646 8ury:I (3.1) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    877647 8ury:J (3.1) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    877648 8ury:K (3.1) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    877649 8ury:K (3.1) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    877650 8ury:L (3.1) BS01 rna ? N/A A0A376ZL25 39117885
    877651 8ury:M (3.1) BS01 rna ? GO:0000028 ... P02359 39117885
    877652 8ury:M (3.1) BS02 rna ? GO:0000028 ... P02359 39117885
    877653 8ury:N (3.1) BS01 rna ? GO:0000028 ... C3SR12 39117885
    877654 8ury:O (3.1) BS01 rna ? GO:0000028 ... C3SRY2 39117885
    877655 8ury:P (3.1) BS01 rna ? GO:0000049 ... P0A7R5 39117885
    877656 8ury:Q (3.1) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    877657 8ury:R (3.1) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    877658 8ury:S (3.1) BS01 rna ? N/A A0A2X1PQW4 39117885
    877659 8ury:T (3.1) BS01 rna ? GO:0000028 ... C3SSQ7 39117885
    877660 8ury:T (3.1) BS02 rna ? GO:0000028 ... C3SSQ7 39117885
    877661 8ury:U (3.1) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    877662 8ury:V (3.1) BS01 rna ? GO:0000028 ... C3SQY7 39117885
    877663 8ury:W (3.1) BS01 rna ? GO:0000028 ... C3SQW2 39117885
    877664 8ury:X (3.1) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877665 8ury:X (3.1) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877666 8ury:Y (3.1) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    877667 8ury:b (3.1) BS01 rna ? GO:0003735 ... P0A7M0 39117885
    877668 8ury:b (3.1) BS02 rna ? GO:0003735 ... P0A7M0 39117885
    877669 8ury:c (3.1) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    877670 8ury:e (3.1) BS01 rna ? GO:0005840 ... P0A7M8 39117885
    877671 8ury:f (3.1) BS01 rna ? GO:0005840 ... C3SR32 39117885
    877672 8ury:f (3.1) BS02 rna ? GO:0005840 ... C3SR32 39117885
    877673 8ury:g (3.1) BS01 rna ? GO:0005840 ... P0A7N0 39117885
    877674 8ury:h (3.1) BS01 rna ? GO:0000027 ... P60422 39117885
    877675 8ury:i (3.1) BS01 rna ? GO:0005840 ... C3TE02 39117885
    877676 8ury:j (3.1) BS01 rna ? GO:0000027 ... P60438 39117885
    877677 8ury:k (3.1) BS01 rna ? GO:0003735 ... C3SME7 39117885
    877678 8ury:l (3.1) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    877679 8ury:m (3.1) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    877680 8ury:n (3.1) BS01 rna ? GO:0000049 ... A0A140N5A3 39117885
    877681 8ury:n (3.1) BS02 rna ? GO:0000049 ... A0A140N5A3 39117885
    877682 8ury:n (3.1) BS03 rna ? GO:0000049 ... A0A140N5A3 39117885
    877683 8ury:o (3.1) BS01 rna ? GO:0003735 ... P0A7Q2 39117885
    877684 8ury:p (3.1) BS01 rna ? GO:0002181 ... C3SR17 39117885
    877685 8ury:q (3.1) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    877686 8ury:r (3.1) BS01 rna ? GO:0005840 ... C3SFP2 39117885
    877687 8ury:s (3.1) BS01 rna ? GO:0003729 ... P0AA12 39117885
    877688 8ury:t (3.1) BS01 rna ? GO:0003735 ... S1NW45 39117885
    877689 8ury:t (3.1) BS02 rna ? GO:0003735 ... S1NW45 39117885
    877690 8ury:u (3.1) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    877691 8ury:v (3.1) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    877692 8ury:v (3.1) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    877693 8ury:w (3.1) BS01 rna ? GO:0003735 ... C3SR72 39117885
    877694 8ury:x (3.1) BS01 rna ? GO:0005737 ... A0A828U007 39117885
    877695 8ury:x (3.1) BS02 rna ? GO:0005737 ... A0A828U007 39117885
    877696 8ury:y (3.1) BS01 rna ? GO:0003735 ... P0A7K8 39117885
    877697 8ury:z (3.1) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    877698 8us1:A (2.65) BS01 C8E N/A GO:0009279 ... Q9I0U1 38959031
    877699 8us1:A (2.65) BS02 C8E N/A GO:0009279 ... Q9I0U1 38959031
    877700 8us3:A (3.1) BS01 C8E N/A GO:0009279 ... Q9I0U1 38959031
    877701 8usf:A (1.45) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    877702 8usf:B (1.45) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    877703 8ush:A (1.32) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    877704 8ush:B (1.32) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    877705 8usj:A (1.6) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    877706 8usj:B (1.6) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    877707 8usj:C (1.6) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    877708 8usl:A (1.55) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    877709 8usl:B (1.55) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    877710 8usm:A (1.63) BS01 XC8 ? GO:0007155 ... P77588 38308631
    877711 8usm:B (1.63) BS01 XC8 ? GO:0007155 ... P77588 38308631
    877712 8usr:A (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    877713 8usr:A (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    877714 8usr:B (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    877715 8usr:B (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    877716 8usr:D (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    877717 8usr:D (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    877718 8uss:A (1.47) BS01 XCW ? GO:0002225 ... Q16552 38574366
    877719 8usu:A (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    877720 8usu:B (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    877721 8usw:A (4.23) BS01 DQC ? GO:0005216 ... Q05586 38598639
    877722 8usw:C (4.23) BS01 DQC ? GO:0005216 ... Q05586 38598639
    877723 8ut1:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877724 8ut1:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877725 8ut1:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877726 8ut1:A (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877727 8ut1:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877728 8ut1:B (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877729 8ut1:B (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877730 8ut1:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877731 8ut1:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877732 8ut1:C (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877733 8ut1:C (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877734 8ut1:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877735 8ut1:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877736 8ut1:D (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877737 8ut1:D (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877738 8ut1:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877739 8ut1:E (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877740 8ut1:E (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877741 8ut1:E (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877742 8ut1:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877743 8uta:A (3.05) BS01 rna N/A N/A N/A 38565535
    877744 8uta:B (3.05) BS01 rna N/A N/A N/A 38565535
    877745 8uta:H (3.05) BS01 rna N/A N/A N/A 38565535
    877746 8uta:L (3.05) BS01 rna N/A N/A N/A 38565535
    877747 8utb:A (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877748 8utb:A (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877749 8utb:A (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877750 8utb:A (2.3) BS04 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877751 8utb:A (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877752 8utb:B (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877753 8utb:B (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877754 8utb:B (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877755 8utb:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877756 8utb:B (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877757 8utb:C (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877758 8utb:C (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877759 8utb:C (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877760 8utb:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877761 8utb:C (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877762 8utb:D (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877763 8utb:D (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877764 8utb:D (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877765 8utb:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877766 8utb:D (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877767 8utb:E (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877768 8utb:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877769 8utb:E (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877770 8utb:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877771 8utb:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    877772 8ute:A (1.45) BS01 XKQ 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38365209
    877773 8utl:A (1.56) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 38306609
    877774 8utl:A (1.56) BS02 CA 3.4.21.4 GO:0004175 ... P00760 38306609
    877775 8utn:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877776 8utn:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877777 8utn:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877778 8utn:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877779 8utn:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877780 8utn:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877781 8utn:K (3.1) BS01 MG ? N/A Q12756 38956021
    877782 8utn:K (3.1) BS02 ANP ? N/A Q12756 38956021
    877783 8utn:N (3.1) BS01 ANP ? N/A Q12756 38956021
    877784 8utn:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877785 8uto:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877786 8uto:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877787 8uto:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877788 8uto:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877789 8uto:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877790 8uto:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877791 8uto:K (3.2) BS01 ANP ? N/A Q12756 38956021
    877792 8uto:N (3.2) BS01 ANP ? N/A Q12756 38956021
    877793 8uto:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877794 8utp:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877795 8utp:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877796 8utp:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877797 8utp:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    877798 8utp:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    877799 8utp:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    877800 8utp:K (3.2) BS01 MG ? N/A Q12756 38956021
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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