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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    877401 8urh:U (5.7) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    877402 8urh:V (5.7) BS01 rna N/A N/A N/A 39117885
    877403 8urh:W (5.7) BS01 rna N/A N/A N/A 39117885
    877404 8urh:X (5.7) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877405 8urh:X (5.7) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877406 8urh:Y (5.7) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    877407 8urh:b (5.7) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    877408 8urh:b (5.7) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    877409 8urh:c (5.7) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    877410 8urh:e (5.7) BS01 rna N/A N/A N/A 39117885
    877411 8urh:f (5.7) BS01 rna N/A N/A N/A 39117885
    877412 8urh:f (5.7) BS02 rna N/A N/A N/A 39117885
    877413 8urh:g (5.7) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    877414 8urh:h (5.7) BS01 rna ? GO:0000027 ... P60422 39117885
    877415 8urh:i (5.7) BS01 rna N/A N/A N/A 39117885
    877416 8urh:j (5.7) BS01 rna ? GO:0000027 ... P60438 39117885
    877417 8urh:k (5.7) BS01 rna N/A N/A N/A 39117885
    877418 8urh:l (5.7) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    877419 8urh:m (5.7) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    877420 8urh:n (5.7) BS01 rna N/A N/A N/A 39117885
    877421 8urh:n (5.7) BS02 rna N/A N/A N/A 39117885
    877422 8urh:n (5.7) BS03 rna N/A N/A N/A 39117885
    877423 8urh:o (5.7) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    877424 8urh:p (5.7) BS01 rna ? GO:0002181 ... C3SR17 39117885
    877425 8urh:q (5.7) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    877426 8urh:r (5.7) BS01 rna N/A N/A N/A 39117885
    877427 8urh:s (5.7) BS01 rna N/A N/A N/A 39117885
    877428 8urh:t (5.7) BS01 rna ? GO:0003735 ... S1NW45 39117885
    877429 8urh:t (5.7) BS02 rna ? GO:0003735 ... S1NW45 39117885
    877430 8urh:u (5.7) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    877431 8urh:v (5.7) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    877432 8urh:v (5.7) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    877433 8urh:w (5.7) BS01 rna N/A N/A N/A 39117885
    877434 8urh:x (5.7) BS01 rna N/A N/A N/A 39117885
    877435 8urh:x (5.7) BS02 rna N/A N/A N/A 39117885
    877436 8urh:y (5.7) BS01 rna N/A N/A N/A 39117885
    877437 8urh:z (5.7) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    877438 8uri:0 (5.3) BS01 rna N/A N/A N/A 39117885
    877439 8uri:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    877440 8uri:2 (5.3) BS01 rna N/A N/A N/A 39117885
    877441 8uri:3 (5.3) BS01 rna N/A N/A N/A 39117885
    877442 8uri:4 (5.3) BS01 rna N/A N/A N/A 39117885
    877443 8uri:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    877444 8uri:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877445 8uri:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877446 8uri:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877447 8uri:AB (5.3) BS01 dna ? GO:0001073 ... C3SK02 39117885
    877448 8uri:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877449 8uri:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877450 8uri:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877451 8uri:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877452 8uri:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877453 8uri:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877454 8uri:C (5.3) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    877455 8uri:E (5.3) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    877456 8uri:F (5.3) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    877457 8uri:G (5.3) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    877458 8uri:I (5.3) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    877459 8uri:I (5.3) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    877460 8uri:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    877461 8uri:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    877462 8uri:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    877463 8uri:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    877464 8uri:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    877465 8uri:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    877466 8uri:N (5.3) BS01 rna N/A N/A N/A 39117885
    877467 8uri:O (5.3) BS01 rna N/A N/A N/A 39117885
    877468 8uri:P (5.3) BS01 rna N/A N/A N/A 39117885
    877469 8uri:Q (5.3) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    877470 8uri:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    877471 8uri:S (5.3) BS01 rna N/A N/A N/A 39117885
    877472 8uri:T (5.3) BS01 rna N/A N/A N/A 39117885
    877473 8uri:T (5.3) BS02 rna N/A N/A N/A 39117885
    877474 8uri:U (5.3) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    877475 8uri:V (5.3) BS01 rna N/A N/A N/A 39117885
    877476 8uri:W (5.3) BS01 rna N/A N/A N/A 39117885
    877477 8uri:X (5.3) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877478 8uri:X (5.3) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877479 8uri:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    877480 8uri:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    877481 8uri:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    877482 8uri:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    877483 8uri:e (5.3) BS01 rna N/A N/A N/A 39117885
    877484 8uri:f (5.3) BS01 rna N/A N/A N/A 39117885
    877485 8uri:f (5.3) BS02 rna N/A N/A N/A 39117885
    877486 8uri:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    877487 8uri:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    877488 8uri:i (5.3) BS01 rna N/A N/A N/A 39117885
    877489 8uri:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    877490 8uri:k (5.3) BS01 rna N/A N/A N/A 39117885
    877491 8uri:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    877492 8uri:m (5.3) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    877493 8uri:n (5.3) BS01 rna N/A N/A N/A 39117885
    877494 8uri:n (5.3) BS02 rna N/A N/A N/A 39117885
    877495 8uri:n (5.3) BS03 rna N/A N/A N/A 39117885
    877496 8uri:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    877497 8uri:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    877498 8uri:q (5.3) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    877499 8uri:r (5.3) BS01 rna N/A N/A N/A 39117885
    877500 8uri:s (5.3) BS01 rna N/A N/A N/A 39117885
    877501 8uri:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    877502 8uri:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    877503 8uri:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    877504 8uri:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    877505 8uri:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    877506 8uri:w (5.3) BS01 rna N/A N/A N/A 39117885
    877507 8uri:x (5.3) BS01 rna N/A N/A N/A 39117885
    877508 8uri:x (5.3) BS02 rna N/A N/A N/A 39117885
    877509 8uri:y (5.3) BS01 rna N/A N/A N/A 39117885
    877510 8uri:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    877511 8urk:A (2.11) BS01 dna N/A N/A A0A8I1DKW0 39244607
    877512 8urk:A (2.11) BS02 dna N/A N/A A0A8I1DKW0 39244607
    877513 8urk:A (2.11) BS03 dna N/A N/A A0A8I1DKW0 39244607
    877514 8urk:A (2.11) BS04 dna N/A N/A A0A8I1DKW0 39244607
    877515 8urk:A (2.11) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    877516 8urk:A (2.11) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    877517 8urk:B (2.11) BS01 dna N/A N/A A0A8I1DKW0 39244607
    877518 8urk:B (2.11) BS02 dna N/A N/A A0A8I1DKW0 39244607
    877519 8urk:B (2.11) BS03 dna N/A N/A A0A8I1DKW0 39244607
    877520 8urk:B (2.11) BS04 FRU N/A N/A A0A8I1DKW0 39244607
    877521 8urk:B (2.11) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    877522 8urk:B (2.11) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    877523 8urk:C (2.11) BS01 dna N/A N/A A0A8I1DKW0 39244607
    877524 8urk:C (2.11) BS02 dna N/A N/A A0A8I1DKW0 39244607
    877525 8urk:C (2.11) BS03 dna N/A N/A A0A8I1DKW0 39244607
    877526 8urk:C (2.11) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    877527 8urk:D (2.11) BS01 dna N/A N/A A0A8I1DKW0 39244607
    877528 8urk:D (2.11) BS02 dna N/A N/A A0A8I1DKW0 39244607
    877529 8urk:D (2.11) BS03 dna N/A N/A A0A8I1DKW0 39244607
    877530 8urk:D (2.11) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    877531 8url:A (2.2) BS01 CA N/A N/A N/A N/A
    877532 8url:A (2.2) BS02 CA N/A N/A N/A N/A
    877533 8urq:A (3.3) BS01 dna N/A GO:0000228 ... P23179 N/A
    877534 8urq:A (3.3) BS02 MG N/A GO:0000228 ... P23179 N/A
    877535 8urq:B (3.3) BS01 dna N/A GO:0000794 ... Q02721 N/A
    877536 8urq:F (3.3) BS01 dna N/A GO:0000794 ... P33323 N/A
    877537 8uru:A (3.7) BS01 dna N/A GO:0000228 ... P23179 N/A
    877538 8uru:A (3.7) BS02 MG N/A GO:0000228 ... P23179 N/A
    877539 8uru:F (3.7) BS01 dna N/A GO:0000794 ... P33323 N/A
    877540 8urw:C (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    877541 8urw:C (2.79) BS02 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    877542 8urw:C (2.79) BS03 rna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    877543 8urw:D (2.79) BS01 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    877544 8urw:D (2.79) BS02 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    877545 8urw:D (2.79) BS03 rna 2.7.7.6 GO:0000287 ... P42079 38354263
    877546 8urw:D (2.79) BS04 MG 2.7.7.6 GO:0000287 ... P42079 38354263
    877547 8urw:D (2.79) BS05 ZN 2.7.7.6 GO:0000287 ... P42079 38354263
    877548 8urw:G (2.79) BS01 dna ? GO:0005829 ... Q31QK2 38354263
    877549 8urw:Z (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N15 38354263
    877550 8urw:Z (2.79) BS02 ZN 2.7.7.6 GO:0000428 ... Q31N15 38354263
    877551 8urw:Z (2.79) BS03 CTP 2.7.7.6 GO:0000428 ... Q31N15 38354263
    877552 8urx:0 (6.6) BS01 rna N/A N/A N/A 39117885
    877553 8urx:1 (6.6) BS01 rna ? GO:0002181 ... P61175 39117885
    877554 8urx:2 (6.6) BS01 rna N/A N/A N/A 39117885
    877555 8urx:3 (6.6) BS01 rna N/A N/A N/A 39117885
    877556 8urx:4 (6.6) BS01 rna N/A N/A N/A 39117885
    877557 8urx:9 (6.6) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    877558 8urx:AA (6.6) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877559 8urx:AA (6.6) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877560 8urx:AA (6.6) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877561 8urx:AB (6.6) BS01 dna ? GO:0001073 ... C3SK02 39117885
    877562 8urx:AE (6.6) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877563 8urx:AE (6.6) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877564 8urx:AE (6.6) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877565 8urx:AE (6.6) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877566 8urx:AE (6.6) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877567 8urx:AE (6.6) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877568 8urx:C (6.6) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    877569 8urx:E (6.6) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    877570 8urx:F (6.6) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    877571 8urx:G (6.6) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    877572 8urx:I (6.6) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    877573 8urx:I (6.6) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    877574 8urx:J (6.6) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    877575 8urx:K (6.6) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    877576 8urx:K (6.6) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    877577 8urx:L (6.6) BS01 rna ? GO:0002181 ... P02358 39117885
    877578 8urx:M (6.6) BS01 rna ? GO:0000028 ... P02359 39117885
    877579 8urx:M (6.6) BS02 rna ? GO:0000028 ... P02359 39117885
    877580 8urx:N (6.6) BS01 rna N/A N/A N/A 39117885
    877581 8urx:O (6.6) BS01 rna N/A N/A N/A 39117885
    877582 8urx:P (6.6) BS01 rna N/A N/A N/A 39117885
    877583 8urx:Q (6.6) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    877584 8urx:R (6.6) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    877585 8urx:S (6.6) BS01 rna N/A N/A N/A 39117885
    877586 8urx:T (6.6) BS01 rna N/A N/A N/A 39117885
    877587 8urx:T (6.6) BS02 rna N/A N/A N/A 39117885
    877588 8urx:U (6.6) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    877589 8urx:V (6.6) BS01 rna N/A N/A N/A 39117885
    877590 8urx:W (6.6) BS01 rna N/A N/A N/A 39117885
    877591 8urx:X (6.6) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877592 8urx:X (6.6) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877593 8urx:Y (6.6) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    877594 8urx:b (6.6) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    877595 8urx:b (6.6) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    877596 8urx:c (6.6) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    877597 8urx:e (6.6) BS01 rna N/A N/A N/A 39117885
    877598 8urx:f (6.6) BS01 rna N/A N/A N/A 39117885
    877599 8urx:f (6.6) BS02 rna N/A N/A N/A 39117885
    877600 8urx:g (6.6) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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