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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    877201 8uqp:L (3.8) BS01 rna ? GO:0002181 ... P02358 39117885
    877202 8uqp:M (3.8) BS01 rna ? GO:0000028 ... P02359 39117885
    877203 8uqp:M (3.8) BS02 rna ? GO:0000028 ... P02359 39117885
    877204 8uqp:N (3.8) BS01 rna N/A N/A N/A 39117885
    877205 8uqp:O (3.8) BS01 rna N/A N/A N/A 39117885
    877206 8uqp:P (3.8) BS01 rna N/A N/A N/A 39117885
    877207 8uqp:Q (3.8) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    877208 8uqp:R (3.8) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    877209 8uqp:S (3.8) BS01 rna N/A N/A N/A 39117885
    877210 8uqp:T (3.8) BS01 rna N/A N/A N/A 39117885
    877211 8uqp:T (3.8) BS02 rna N/A N/A N/A 39117885
    877212 8uqp:U (3.8) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    877213 8uqp:V (3.8) BS01 rna N/A N/A N/A 39117885
    877214 8uqp:W (3.8) BS01 rna N/A N/A N/A 39117885
    877215 8uqp:X (3.8) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877216 8uqp:X (3.8) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877217 8uqp:Y (3.8) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    877218 8uqp:b (3.8) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    877219 8uqp:b (3.8) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    877220 8uqp:c (3.8) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    877221 8uqp:e (3.8) BS01 rna N/A N/A N/A 39117885
    877222 8uqp:f (3.8) BS01 rna N/A N/A N/A 39117885
    877223 8uqp:f (3.8) BS02 rna N/A N/A N/A 39117885
    877224 8uqp:g (3.8) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    877225 8uqp:h (3.8) BS01 rna ? GO:0000027 ... P60422 39117885
    877226 8uqp:i (3.8) BS01 rna N/A N/A N/A 39117885
    877227 8uqp:j (3.8) BS01 rna ? GO:0000027 ... P60438 39117885
    877228 8uqp:k (3.8) BS01 rna N/A N/A N/A 39117885
    877229 8uqp:l (3.8) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    877230 8uqp:m (3.8) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    877231 8uqp:n (3.8) BS01 rna N/A N/A N/A 39117885
    877232 8uqp:n (3.8) BS02 rna N/A N/A N/A 39117885
    877233 8uqp:n (3.8) BS03 rna N/A N/A N/A 39117885
    877234 8uqp:o (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    877235 8uqp:p (3.8) BS01 rna ? GO:0002181 ... C3SR17 39117885
    877236 8uqp:q (3.8) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    877237 8uqp:r (3.8) BS01 rna N/A N/A N/A 39117885
    877238 8uqp:s (3.8) BS01 rna N/A N/A N/A 39117885
    877239 8uqp:t (3.8) BS01 rna ? GO:0003735 ... S1NW45 39117885
    877240 8uqp:t (3.8) BS02 rna ? GO:0003735 ... S1NW45 39117885
    877241 8uqp:u (3.8) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    877242 8uqp:v (3.8) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    877243 8uqp:v (3.8) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    877244 8uqp:w (3.8) BS01 rna N/A N/A N/A 39117885
    877245 8uqp:x (3.8) BS01 rna N/A N/A N/A 39117885
    877246 8uqp:x (3.8) BS02 rna N/A N/A N/A 39117885
    877247 8uqp:y (3.8) BS01 rna N/A N/A N/A 39117885
    877248 8uqp:z (3.8) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    877249 8uqv:A (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877250 8uqv:A (3.6) BS02 XVC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877251 8uqv:A (3.6) BS03 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877252 8uqv:B (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877253 8uqv:B (3.6) BS02 XVC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877254 8uqv:B (3.6) BS03 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877255 8uqv:C (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877256 8uqv:C (3.6) BS02 XVC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877257 8uqv:C (3.6) BS03 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877258 8uqv:D (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877259 8uqv:D (3.6) BS02 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    877260 8uqy:A (1.78) BS01 EU3 ? GO:0008270 ... A0A060GYS7 38512071
    877261 8uqz:A (1.61) BS01 GD3 ? GO:0008270 ... A0A060GYS7 38512071
    877262 8ur0:0 (3.4) BS01 rna N/A N/A N/A 39117885
    877263 8ur0:1 (3.4) BS01 rna ? GO:0002181 ... P61175 39117885
    877264 8ur0:2 (3.4) BS01 rna N/A N/A N/A 39117885
    877265 8ur0:3 (3.4) BS01 rna N/A N/A N/A 39117885
    877266 8ur0:4 (3.4) BS01 rna N/A N/A N/A 39117885
    877267 8ur0:9 (3.4) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    877268 8ur0:AA (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877269 8ur0:AA (3.4) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877270 8ur0:AA (3.4) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877271 8ur0:AB (3.4) BS01 dna ? GO:0001073 ... C3SK02 39117885
    877272 8ur0:AE (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877273 8ur0:AE (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877274 8ur0:AE (3.4) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877275 8ur0:AE (3.4) BS04 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877276 8ur0:AE (3.4) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877277 8ur0:AE (3.4) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877278 8ur0:AE (3.4) BS07 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877279 8ur0:C (3.4) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    877280 8ur0:E (3.4) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    877281 8ur0:F (3.4) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    877282 8ur0:G (3.4) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    877283 8ur0:I (3.4) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    877284 8ur0:I (3.4) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    877285 8ur0:J (3.4) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    877286 8ur0:K (3.4) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    877287 8ur0:K (3.4) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    877288 8ur0:L (3.4) BS01 rna ? GO:0002181 ... P02358 39117885
    877289 8ur0:M (3.4) BS01 rna ? GO:0000028 ... P02359 39117885
    877290 8ur0:M (3.4) BS02 rna ? GO:0000028 ... P02359 39117885
    877291 8ur0:N (3.4) BS01 rna N/A N/A N/A 39117885
    877292 8ur0:O (3.4) BS01 rna N/A N/A N/A 39117885
    877293 8ur0:P (3.4) BS01 rna N/A N/A N/A 39117885
    877294 8ur0:Q (3.4) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    877295 8ur0:R (3.4) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    877296 8ur0:S (3.4) BS01 rna N/A N/A N/A 39117885
    877297 8ur0:T (3.4) BS01 rna N/A N/A N/A 39117885
    877298 8ur0:T (3.4) BS02 rna N/A N/A N/A 39117885
    877299 8ur0:U (3.4) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    877300 8ur0:V (3.4) BS01 rna N/A N/A N/A 39117885
    877301 8ur0:W (3.4) BS01 rna N/A N/A N/A 39117885
    877302 8ur0:X (3.4) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877303 8ur0:X (3.4) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877304 8ur0:Y (3.4) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    877305 8ur0:b (3.4) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    877306 8ur0:b (3.4) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    877307 8ur0:c (3.4) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    877308 8ur0:e (3.4) BS01 rna N/A N/A N/A 39117885
    877309 8ur0:f (3.4) BS01 rna N/A N/A N/A 39117885
    877310 8ur0:f (3.4) BS02 rna N/A N/A N/A 39117885
    877311 8ur0:g (3.4) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    877312 8ur0:h (3.4) BS01 rna ? GO:0000027 ... P60422 39117885
    877313 8ur0:i (3.4) BS01 rna N/A N/A N/A 39117885
    877314 8ur0:j (3.4) BS01 rna ? GO:0000027 ... P60438 39117885
    877315 8ur0:k (3.4) BS01 rna N/A N/A N/A 39117885
    877316 8ur0:l (3.4) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    877317 8ur0:m (3.4) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    877318 8ur0:n (3.4) BS01 rna N/A N/A N/A 39117885
    877319 8ur0:n (3.4) BS02 rna N/A N/A N/A 39117885
    877320 8ur0:n (3.4) BS03 rna N/A N/A N/A 39117885
    877321 8ur0:o (3.4) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    877322 8ur0:p (3.4) BS01 rna ? GO:0002181 ... C3SR17 39117885
    877323 8ur0:q (3.4) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    877324 8ur0:r (3.4) BS01 rna N/A N/A N/A 39117885
    877325 8ur0:s (3.4) BS01 rna N/A N/A N/A 39117885
    877326 8ur0:t (3.4) BS01 rna ? GO:0003735 ... S1NW45 39117885
    877327 8ur0:t (3.4) BS02 rna ? GO:0003735 ... S1NW45 39117885
    877328 8ur0:u (3.4) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    877329 8ur0:v (3.4) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    877330 8ur0:v (3.4) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    877331 8ur0:w (3.4) BS01 rna N/A N/A N/A 39117885
    877332 8ur0:x (3.4) BS01 rna N/A N/A N/A 39117885
    877333 8ur0:x (3.4) BS02 rna N/A N/A N/A 39117885
    877334 8ur0:y (3.4) BS01 rna N/A N/A N/A 39117885
    877335 8ur0:z (3.4) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    877336 8ur2:B (1.9) BS01 PYR 5.3.2.1
    5.3.3.12    		 GO:0005125 ... A2DXT4 N/A
    877337 8ur9:A (2.3) BS01 XEK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38621119
    877338 8urb:A (3.4) BS01 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    877339 8urb:A (3.4) BS02 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    877340 8urb:A (3.4) BS03 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    877341 8urb:A (3.4) BS04 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    877342 8urc:A (2.5) BS01 FAD N/A N/A N/A 39265075
    877343 8urc:A (2.5) BS02 DR9 N/A N/A N/A 39265075
    877344 8urc:B (2.5) BS01 FAD N/A N/A N/A 39265075
    877345 8urc:B (2.5) BS02 DR9 N/A N/A N/A 39265075
    877346 8urc:B (2.5) BS03 DR9 N/A N/A N/A 39265075
    877347 8urc:C (2.5) BS01 DR9 N/A N/A N/A 39265075
    877348 8urc:C (2.5) BS02 DR9 N/A N/A N/A 39265075
    877349 8urc:C (2.5) BS03 FAD N/A N/A N/A 39265075
    877350 8urc:C (2.5) BS04 DR9 N/A N/A N/A 39265075
    877351 8urd:A (2.8) BS01 FAD N/A N/A N/A 39265075
    877352 8urd:A (2.8) BS02 WTQ N/A N/A N/A 39265075
    877353 8urd:A (2.8) BS03 DR9 N/A N/A N/A 39265075
    877354 8urd:B (2.8) BS01 FAD N/A N/A N/A 39265075
    877355 8urd:B (2.8) BS02 WTQ N/A N/A N/A 39265075
    877356 8urd:B (2.8) BS03 DR9 N/A N/A N/A 39265075
    877357 8urd:C (2.8) BS01 DR9 N/A N/A N/A 39265075
    877358 8urd:C (2.8) BS02 FAD N/A N/A N/A 39265075
    877359 8urd:C (2.8) BS03 DR9 N/A N/A N/A 39265075
    877360 8urd:C (2.8) BS04 WTQ N/A N/A N/A 39265075
    877361 8urf:A (1.9) BS01 CA N/A N/A P07307 38847394
    877362 8urf:A (1.9) BS02 CA N/A N/A P07307 38847394
    877363 8urf:A (1.9) BS03 CA N/A N/A P07307 38847394
    877364 8urh:0 (5.7) BS01 rna N/A N/A N/A 39117885
    877365 8urh:1 (5.7) BS01 rna ? GO:0002181 ... P61175 39117885
    877366 8urh:2 (5.7) BS01 rna N/A N/A N/A 39117885
    877367 8urh:3 (5.7) BS01 rna N/A N/A N/A 39117885
    877368 8urh:4 (5.7) BS01 rna N/A N/A N/A 39117885
    877369 8urh:9 (5.7) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    877370 8urh:AA (5.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877371 8urh:AA (5.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877372 8urh:AA (5.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877373 8urh:AB (5.7) BS01 dna ? GO:0001073 ... C3SK02 39117885
    877374 8urh:AE (5.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877375 8urh:AE (5.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877376 8urh:AE (5.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877377 8urh:AE (5.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877378 8urh:AE (5.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877379 8urh:AE (5.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877380 8urh:AF (5.7) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    877381 8urh:C (5.7) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    877382 8urh:E (5.7) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    877383 8urh:F (5.7) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    877384 8urh:G (5.7) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    877385 8urh:I (5.7) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    877386 8urh:I (5.7) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    877387 8urh:J (5.7) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    877388 8urh:K (5.7) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    877389 8urh:K (5.7) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    877390 8urh:L (5.7) BS01 rna ? GO:0002181 ... P02358 39117885
    877391 8urh:M (5.7) BS01 rna ? GO:0000028 ... P02359 39117885
    877392 8urh:M (5.7) BS02 rna ? GO:0000028 ... P02359 39117885
    877393 8urh:N (5.7) BS01 rna N/A N/A N/A 39117885
    877394 8urh:O (5.7) BS01 rna N/A N/A N/A 39117885
    877395 8urh:P (5.7) BS01 rna N/A N/A N/A 39117885
    877396 8urh:Q (5.7) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    877397 8urh:R (5.7) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    877398 8urh:S (5.7) BS01 rna N/A N/A N/A 39117885
    877399 8urh:T (5.7) BS01 rna N/A N/A N/A 39117885
    877400 8urh:T (5.7) BS02 rna N/A N/A N/A 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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