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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    877001 8uq5:D (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    877002 8uq7:A (2.31) BS01 X6R N/A N/A P10636 N/A
    877003 8uq7:B (2.31) BS01 X6R N/A N/A P10636 N/A
    877004 8uq7:C (2.31) BS01 X6R N/A N/A P10636 N/A
    877005 8uq7:D (2.31) BS01 X6R N/A N/A P10636 N/A
    877006 8uq8:A (2.34) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877007 8uq8:A (2.34) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877008 8uq8:a (2.34) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877009 8uq8:a (2.34) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877010 8uq9:A (2.3) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877011 8uq9:A (2.3) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877012 8uq9:a (2.3) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877013 8uq9:a (2.3) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877014 8uqa:K (2.049) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877015 8uqa:K (2.049) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877016 8uqb:A (2.484) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877017 8uqb:A (2.484) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877018 8uqc:A (2.61) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877019 8uqc:A (2.61) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27    		 GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5    		 38242129
    877020 8uql:0 (3.2) BS01 rna N/A N/A N/A 39117885
    877021 8uql:1 (3.2) BS01 rna ? GO:0002181 ... P61175 39117885
    877022 8uql:2 (3.2) BS01 rna N/A N/A N/A 39117885
    877023 8uql:3 (3.2) BS01 rna N/A N/A N/A 39117885
    877024 8uql:4 (3.2) BS01 rna N/A N/A N/A 39117885
    877025 8uql:9 (3.2) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    877026 8uql:AA (3.2) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877027 8uql:AA (3.2) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877028 8uql:AA (3.2) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877029 8uql:AB (3.2) BS01 dna ? GO:0001073 ... C3SK02 39117885
    877030 8uql:AE (3.2) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877031 8uql:AE (3.2) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877032 8uql:AE (3.2) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877033 8uql:AE (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877034 8uql:AE (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877035 8uql:AE (3.2) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877036 8uql:AF (3.2) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    877037 8uql:C (3.2) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    877038 8uql:E (3.2) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    877039 8uql:F (3.2) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    877040 8uql:G (3.2) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    877041 8uql:I (3.2) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    877042 8uql:I (3.2) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    877043 8uql:J (3.2) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    877044 8uql:K (3.2) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    877045 8uql:K (3.2) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    877046 8uql:L (3.2) BS01 rna ? GO:0002181 ... P02358 39117885
    877047 8uql:M (3.2) BS01 rna ? GO:0000028 ... P02359 39117885
    877048 8uql:M (3.2) BS02 rna ? GO:0000028 ... P02359 39117885
    877049 8uql:N (3.2) BS01 rna N/A N/A N/A 39117885
    877050 8uql:O (3.2) BS01 rna N/A N/A N/A 39117885
    877051 8uql:P (3.2) BS01 rna N/A N/A N/A 39117885
    877052 8uql:Q (3.2) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    877053 8uql:R (3.2) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    877054 8uql:S (3.2) BS01 rna N/A N/A N/A 39117885
    877055 8uql:T (3.2) BS01 rna N/A N/A N/A 39117885
    877056 8uql:T (3.2) BS02 rna N/A N/A N/A 39117885
    877057 8uql:U (3.2) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    877058 8uql:V (3.2) BS01 rna N/A N/A N/A 39117885
    877059 8uql:W (3.2) BS01 rna N/A N/A N/A 39117885
    877060 8uql:X (3.2) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877061 8uql:X (3.2) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877062 8uql:Y (3.2) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    877063 8uql:b (3.2) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    877064 8uql:b (3.2) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    877065 8uql:c (3.2) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    877066 8uql:e (3.2) BS01 rna N/A N/A N/A 39117885
    877067 8uql:f (3.2) BS01 rna N/A N/A N/A 39117885
    877068 8uql:f (3.2) BS02 rna N/A N/A N/A 39117885
    877069 8uql:g (3.2) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    877070 8uql:h (3.2) BS01 rna ? GO:0000027 ... P60422 39117885
    877071 8uql:i (3.2) BS01 rna N/A N/A N/A 39117885
    877072 8uql:j (3.2) BS01 rna ? GO:0000027 ... P60438 39117885
    877073 8uql:k (3.2) BS01 rna N/A N/A N/A 39117885
    877074 8uql:l (3.2) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    877075 8uql:m (3.2) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    877076 8uql:n (3.2) BS01 rna N/A N/A N/A 39117885
    877077 8uql:n (3.2) BS02 rna N/A N/A N/A 39117885
    877078 8uql:n (3.2) BS03 rna N/A N/A N/A 39117885
    877079 8uql:o (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    877080 8uql:p (3.2) BS01 rna ? GO:0002181 ... C3SR17 39117885
    877081 8uql:q (3.2) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    877082 8uql:r (3.2) BS01 rna N/A N/A N/A 39117885
    877083 8uql:s (3.2) BS01 rna N/A N/A N/A 39117885
    877084 8uql:t (3.2) BS01 rna ? GO:0003735 ... S1NW45 39117885
    877085 8uql:t (3.2) BS02 rna ? GO:0003735 ... S1NW45 39117885
    877086 8uql:u (3.2) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    877087 8uql:v (3.2) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    877088 8uql:v (3.2) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    877089 8uql:w (3.2) BS01 rna N/A N/A N/A 39117885
    877090 8uql:x (3.2) BS01 rna N/A N/A N/A 39117885
    877091 8uql:x (3.2) BS02 rna N/A N/A N/A 39117885
    877092 8uql:y (3.2) BS01 rna N/A N/A N/A 39117885
    877093 8uql:z (3.2) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    877094 8uqm:0 (5.3) BS01 rna N/A N/A N/A 39117885
    877095 8uqm:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    877096 8uqm:2 (5.3) BS01 rna N/A N/A N/A 39117885
    877097 8uqm:3 (5.3) BS01 rna N/A N/A N/A 39117885
    877098 8uqm:4 (5.3) BS01 rna N/A N/A N/A 39117885
    877099 8uqm:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    877100 8uqm:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877101 8uqm:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877102 8uqm:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877103 8uqm:AB (5.3) BS01 dna ? GO:0001073 ... C3SK02 39117885
    877104 8uqm:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877105 8uqm:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877106 8uqm:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877107 8uqm:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877108 8uqm:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877109 8uqm:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877110 8uqm:C (5.3) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    877111 8uqm:E (5.3) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    877112 8uqm:F (5.3) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    877113 8uqm:G (5.3) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    877114 8uqm:I (5.3) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    877115 8uqm:I (5.3) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    877116 8uqm:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    877117 8uqm:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    877118 8uqm:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    877119 8uqm:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    877120 8uqm:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    877121 8uqm:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    877122 8uqm:N (5.3) BS01 rna N/A N/A N/A 39117885
    877123 8uqm:O (5.3) BS01 rna N/A N/A N/A 39117885
    877124 8uqm:P (5.3) BS01 rna N/A N/A N/A 39117885
    877125 8uqm:Q (5.3) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    877126 8uqm:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    877127 8uqm:S (5.3) BS01 rna N/A N/A N/A 39117885
    877128 8uqm:T (5.3) BS01 rna N/A N/A N/A 39117885
    877129 8uqm:T (5.3) BS02 rna N/A N/A N/A 39117885
    877130 8uqm:U (5.3) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    877131 8uqm:V (5.3) BS01 rna N/A N/A N/A 39117885
    877132 8uqm:W (5.3) BS01 rna N/A N/A N/A 39117885
    877133 8uqm:X (5.3) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877134 8uqm:X (5.3) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    877135 8uqm:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    877136 8uqm:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    877137 8uqm:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    877138 8uqm:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    877139 8uqm:e (5.3) BS01 rna N/A N/A N/A 39117885
    877140 8uqm:f (5.3) BS01 rna N/A N/A N/A 39117885
    877141 8uqm:f (5.3) BS02 rna N/A N/A N/A 39117885
    877142 8uqm:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    877143 8uqm:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    877144 8uqm:i (5.3) BS01 rna N/A N/A N/A 39117885
    877145 8uqm:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    877146 8uqm:k (5.3) BS01 rna N/A N/A N/A 39117885
    877147 8uqm:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    877148 8uqm:m (5.3) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    877149 8uqm:n (5.3) BS01 rna N/A N/A N/A 39117885
    877150 8uqm:n (5.3) BS02 rna N/A N/A N/A 39117885
    877151 8uqm:n (5.3) BS03 rna N/A N/A N/A 39117885
    877152 8uqm:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    877153 8uqm:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    877154 8uqm:q (5.3) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    877155 8uqm:r (5.3) BS01 rna N/A N/A N/A 39117885
    877156 8uqm:s (5.3) BS01 rna N/A N/A N/A 39117885
    877157 8uqm:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    877158 8uqm:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    877159 8uqm:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    877160 8uqm:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    877161 8uqm:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    877162 8uqm:w (5.3) BS01 rna N/A N/A N/A 39117885
    877163 8uqm:x (5.3) BS01 rna N/A N/A N/A 39117885
    877164 8uqm:x (5.3) BS02 rna N/A N/A N/A 39117885
    877165 8uqm:y (5.3) BS01 rna N/A N/A N/A 39117885
    877166 8uqm:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    877167 8uqn:A (3.4) BS01 GDP ? GO:0001508 ... P50148 37991948
    877168 8uqn:A (3.4) BS02 ALF ? GO:0001508 ... P50148 37991948
    877169 8uqn:A (3.4) BS03 MG ? GO:0001508 ... P50148 37991948
    877170 8uqn:B (3.4) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37991948
    877171 8uqo:A (3.37) BS01 GDP ? GO:0001508 ... P50148 37991948
    877172 8uqo:A (3.37) BS02 ALF ? GO:0001508 ... P50148 37991948
    877173 8uqo:A (3.37) BS03 MG ? GO:0001508 ... P50148 37991948
    877174 8uqo:Q (3.37) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37991948
    877175 8uqp:0 (3.8) BS01 rna N/A N/A N/A 39117885
    877176 8uqp:1 (3.8) BS01 rna ? GO:0002181 ... P61175 39117885
    877177 8uqp:2 (3.8) BS01 rna N/A N/A N/A 39117885
    877178 8uqp:3 (3.8) BS01 rna N/A N/A N/A 39117885
    877179 8uqp:4 (3.8) BS01 rna N/A N/A N/A 39117885
    877180 8uqp:9 (3.8) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    877181 8uqp:AA (3.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877182 8uqp:AA (3.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877183 8uqp:AA (3.8) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    877184 8uqp:AB (3.8) BS01 dna ? GO:0001073 ... C3SK02 39117885
    877185 8uqp:AE (3.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877186 8uqp:AE (3.8) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877187 8uqp:AE (3.8) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877188 8uqp:AE (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877189 8uqp:AE (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877190 8uqp:AE (3.8) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    877191 8uqp:AF (3.8) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    877192 8uqp:C (3.8) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    877193 8uqp:E (3.8) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    877194 8uqp:F (3.8) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    877195 8uqp:G (3.8) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    877196 8uqp:I (3.8) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    877197 8uqp:I (3.8) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    877198 8uqp:J (3.8) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    877199 8uqp:K (3.8) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    877200 8uqp:K (3.8) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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