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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    876801 8upp:A (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876802 8upp:A (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876803 8upp:A (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876804 8upp:B (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876805 8upp:B (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876806 8upp:B (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876807 8upp:B (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876808 8upp:B (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876809 8upp:C (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876810 8upp:C (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876811 8upp:C (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876812 8upp:C (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876813 8upp:C (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876814 8upp:D (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876815 8upp:D (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876816 8upp:D (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876817 8upp:D (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876818 8upp:D (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876819 8upp:E (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876820 8upp:E (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876821 8upp:E (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876822 8upp:E (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876823 8upp:E (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876824 8upp:F (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876825 8upp:F (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876826 8upp:F (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876827 8upp:F (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876828 8upp:F (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876829 8upp:G (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876830 8upp:G (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876831 8upp:G (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876832 8upp:G (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876833 8upp:H (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876834 8upp:H (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876835 8upp:H (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876836 8upp:H (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876837 8upp:H (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876838 8upp:I (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876839 8upp:I (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876840 8upp:I (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876841 8upp:I (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876842 8upp:I (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876843 8upp:J (1.78) BS01 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876844 8upp:J (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876845 8upp:J (1.78) BS03 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876846 8upp:J (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876847 8upp:J (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876848 8upp:K (1.78) BS01 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876849 8upp:K (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876850 8upp:K (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876851 8upp:K (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876852 8upp:K (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876853 8upp:L (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876854 8upp:L (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876855 8upp:L (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876856 8upp:L (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876857 8upq:A (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876858 8upq:A (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876859 8upq:A (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876860 8upq:B (2.45) BS01 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876861 8upq:B (2.45) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876862 8upq:B (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876863 8upq:C (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876864 8upq:C (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876865 8upq:C (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876866 8upq:D (2.45) BS01 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876867 8upq:D (2.45) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876868 8upq:D (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876869 8upq:E (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876870 8upq:E (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876871 8upq:F (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876872 8upq:F (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876873 8upr:0 (5.3) BS01 rna N/A N/A N/A 39117885
    876874 8upr:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    876875 8upr:2 (5.3) BS01 rna N/A N/A N/A 39117885
    876876 8upr:3 (5.3) BS01 rna N/A N/A N/A 39117885
    876877 8upr:4 (5.3) BS01 rna N/A N/A N/A 39117885
    876878 8upr:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    876879 8upr:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    876880 8upr:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    876881 8upr:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    876882 8upr:AB (5.3) BS01 dna ? GO:0001073 ... C3SK02 39117885
    876883 8upr:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876884 8upr:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876885 8upr:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876886 8upr:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876887 8upr:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876888 8upr:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876889 8upr:AF (5.3) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    876890 8upr:C (5.3) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    876891 8upr:E (5.3) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    876892 8upr:F (5.3) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    876893 8upr:G (5.3) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    876894 8upr:I (5.3) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    876895 8upr:I (5.3) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    876896 8upr:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    876897 8upr:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    876898 8upr:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    876899 8upr:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    876900 8upr:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    876901 8upr:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    876902 8upr:N (5.3) BS01 rna N/A N/A N/A 39117885
    876903 8upr:O (5.3) BS01 rna N/A N/A N/A 39117885
    876904 8upr:P (5.3) BS01 rna N/A N/A N/A 39117885
    876905 8upr:Q (5.3) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    876906 8upr:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    876907 8upr:S (5.3) BS01 rna N/A N/A N/A 39117885
    876908 8upr:T (5.3) BS01 rna N/A N/A N/A 39117885
    876909 8upr:T (5.3) BS02 rna N/A N/A N/A 39117885
    876910 8upr:U (5.3) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    876911 8upr:V (5.3) BS01 rna N/A N/A N/A 39117885
    876912 8upr:W (5.3) BS01 rna N/A N/A N/A 39117885
    876913 8upr:X (5.3) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    876914 8upr:X (5.3) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    876915 8upr:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    876916 8upr:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    876917 8upr:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    876918 8upr:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    876919 8upr:e (5.3) BS01 rna N/A N/A N/A 39117885
    876920 8upr:f (5.3) BS01 rna N/A N/A N/A 39117885
    876921 8upr:f (5.3) BS02 rna N/A N/A N/A 39117885
    876922 8upr:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    876923 8upr:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    876924 8upr:i (5.3) BS01 rna N/A N/A N/A 39117885
    876925 8upr:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    876926 8upr:k (5.3) BS01 rna N/A N/A N/A 39117885
    876927 8upr:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    876928 8upr:m (5.3) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    876929 8upr:n (5.3) BS01 rna N/A N/A N/A 39117885
    876930 8upr:n (5.3) BS02 rna N/A N/A N/A 39117885
    876931 8upr:n (5.3) BS03 rna N/A N/A N/A 39117885
    876932 8upr:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    876933 8upr:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    876934 8upr:q (5.3) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    876935 8upr:r (5.3) BS01 rna N/A N/A N/A 39117885
    876936 8upr:s (5.3) BS01 rna N/A N/A N/A 39117885
    876937 8upr:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    876938 8upr:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    876939 8upr:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    876940 8upr:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    876941 8upr:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    876942 8upr:w (5.3) BS01 rna N/A N/A N/A 39117885
    876943 8upr:x (5.3) BS01 rna N/A N/A N/A 39117885
    876944 8upr:x (5.3) BS02 rna N/A N/A N/A 39117885
    876945 8upr:y (5.3) BS01 rna N/A N/A N/A 39117885
    876946 8upr:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    876947 8ups:A (2.44) BS01 I70 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    876948 8upv:A (1.57) BS01 X83 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    876949 8upw:A (1.44) BS01 X8F 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    876950 8uq2:A (2.98) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876951 8uq2:A (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876952 8uq2:A (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876953 8uq2:B (2.98) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876954 8uq2:B (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876955 8uq2:B (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876956 8uq2:C (2.98) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876957 8uq2:C (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876958 8uq2:C (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876959 8uq2:D (2.98) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876960 8uq2:D (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876961 8uq2:D (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876962 8uq3:A (3.18) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876963 8uq3:A (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876964 8uq3:A (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876965 8uq3:A (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    876966 8uq3:B (3.18) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876967 8uq3:B (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876968 8uq3:B (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876969 8uq3:B (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    876970 8uq3:C (3.18) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876971 8uq3:C (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876972 8uq3:C (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876973 8uq3:C (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    876974 8uq3:D (3.18) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876975 8uq3:D (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876976 8uq3:D (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876977 8uq3:D (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    876978 8uq4:A (3.64) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876979 8uq4:A (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876980 8uq4:A (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876981 8uq4:B (3.64) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876982 8uq4:B (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876983 8uq4:B (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876984 8uq4:C (3.64) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876985 8uq4:C (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876986 8uq4:C (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876987 8uq4:D (3.64) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876988 8uq4:D (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876989 8uq4:D (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876990 8uq5:A (3.96) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876991 8uq5:A (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876992 8uq5:A (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876993 8uq5:B (3.96) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876994 8uq5:B (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876995 8uq5:B (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876996 8uq5:C (3.96) BS01 ZN ? GO:0001666 ... Q92736 39278969
    876997 8uq5:C (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    876998 8uq5:C (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    876999 8uq5:D (3.96) BS01 ZN ? GO:0001666 ... Q92736 39278969
    877000 8uq5:D (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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