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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    876601 8un7:A (3.55) BS01 CA ? N/A P55083 38740766
    876602 8un7:B (3.55) BS01 CA ? N/A P55083 38740766
    876603 8un7:C (3.55) BS01 CA ? N/A P55083 38740766
    876604 8un7:D (3.55) BS01 CA ? N/A P55083 38740766
    876605 8un7:E (3.55) BS01 CA ? N/A P55083 38740766
    876606 8un7:F (3.55) BS01 CA ? N/A P55083 38740766
    876607 8un7:G (3.55) BS01 CA ? N/A P55083 38740766
    876608 8un7:H (3.55) BS01 CA ? N/A P55083 38740766
    876609 8un9:A (2.103) BS01 MG ? GO:0003676 ... P50837 38661211
    876610 8un9:B (2.103) BS01 MG ? GO:0003676 ... P50837 38661211
    876611 8unf:A (3.15) BS01 dna ? GO:0003677 ... P04527 38177685
    876612 8unf:B (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876613 8unf:B (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    876614 8unf:B (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876615 8unf:C (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876616 8unf:C (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    876617 8unf:C (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876618 8unf:D (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876619 8unf:D (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    876620 8unf:D (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876621 8unf:E (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876622 8unf:E (3.15) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    876623 8unh:B (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    876624 8unh:B (3.21) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876625 8unh:E (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    876626 8unj:B (3.35) BS01 MG ? GO:0003677 ... P35250 38669181
    876627 8unj:B (3.35) BS02 AGS ? GO:0003677 ... P35250 38669181
    876628 8unj:C (3.35) BS01 AGS ? GO:0003677 ... P40937 38669181
    876629 8unj:D (3.35) BS01 AGS ? GO:0003677 ... P35249 38669181
    876630 8unj:E (3.35) BS01 ADP ? GO:0000731 ... P40938 38669181
    876631 8unl:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    876632 8unl:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    876633 8unm:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    876634 8unm:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    876635 8unn:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    876636 8unn:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    876637 8uno:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    876638 8uno:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    876639 8unp:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    876640 8unp:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    876641 8unq:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    876642 8unq:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    876643 8unr:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    876644 8unr:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    876645 8uns:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    876646 8uns:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    876647 8unt:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    876648 8unt:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    876649 8unu:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    876650 8unu:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    876651 8unv:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    876652 8unv:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    876653 8unw:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    876654 8unw:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    876655 8unx:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    876656 8unx:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    876657 8uny:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    876658 8uny:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    876659 8unz:A (3.8) BS01 GTP ? GO:0002862 ... P63092 38480881
    876660 8unz:R (3.8) BS01 G1I ? GO:0004930 ... P07550 38480881
    876661 8uo0:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    876662 8uo0:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    876663 8uo1:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    876664 8uo1:R (3.6) BS01 G1I ? GO:0001540 ... P07550 38480881
    876665 8uo2:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    876666 8uo2:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    876667 8uo3:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    876668 8uo3:A (3.5) BS02 MG ? GO:0002862 ... P63092 38480881
    876669 8uo3:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    876670 8uo4:A (4.0) BS01 GTP ? GO:0002862 ... P63092 38480881
    876671 8uo7:A (2.2) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 38306609
    876672 8uo7:A (2.2) BS02 CA 3.4.21.4 GO:0004175 ... P00760 38306609
    876673 8uo8:A (3.2) BS01 X3U ? GO:0001669 ... Q7L1I2 38898101
    876674 8uo8:A (3.2) BS02 PS1 ? GO:0001669 ... Q7L1I2 38898101
    876675 8uo8:A (3.2) BS03 9Z9 ? GO:0001669 ... Q7L1I2 38898101
    876676 8uo8:A (3.2) BS04 9Z9 ? GO:0001669 ... Q7L1I2 38898101
    876677 8uo8:A (3.2) BS05 43Y ? GO:0001669 ... Q7L1I2 38898101
    876678 8uo8:A (3.2) BS06 Y01 ? GO:0001669 ... Q7L1I2 38898101
    876679 8uo9:A (3.3) BS01 X49 ? GO:0005783 ... Q7L0J3 38898101
    876680 8uo9:A (3.3) BS02 Y01 ? GO:0005783 ... Q7L0J3 38898101
    876681 8uo9:A (3.3) BS03 PS1 ? GO:0005783 ... Q7L0J3 38898101
    876682 8uob:A (2.52) BS01 XB5 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    876683 8uob:A (2.52) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    876684 8uob:A (2.52) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    876685 8uob:A (2.52) BS04 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    876686 8uou:A (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    876687 8uou:B (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    876688 8uoz:A (-1.00) BS01 P4P ? GO:0005886 ... P23895 38806470
    876689 8uoz:B (-1.00) BS01 P4P ? GO:0005886 ... P23895 38806470
    876690 8up3:E (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    876691 8up3:F (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    876692 8up6:B (1.7) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    876693 8up6:C (1.7) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    876694 8up8:A (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    876695 8up8:B (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    876696 8up8:C (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    876697 8upf:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    876698 8upf:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    876699 8upf:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    876700 8upf:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    876701 8upf:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    876702 8upf:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    876703 8upf:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    876704 8upf:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    876705 8upf:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    876706 8upf:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    876707 8upf:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    876708 8upf:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    876709 8upf:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    876710 8upf:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    876711 8upf:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    876712 8upf:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    876713 8upf:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    876714 8upf:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    876715 8uph:A (4.13) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    876716 8uph:B (4.13) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    876717 8upi:A (1.55) BS01 CA ? GO:0043190 ... A0A7R6WUD2 38696389
    876718 8upi:A (1.55) BS02 SET ? GO:0043190 ... A0A7R6WUD2 38696389
    876719 8upk:A (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    876720 8upk:B (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    876721 8upm:A (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    876722 8upm:B (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    876723 8upn:A (2.59) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876724 8upn:A (2.59) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876725 8upn:A (2.59) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876726 8upn:A (2.59) BS04 WXU 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876727 8upo:0 (5.5) BS01 rna N/A N/A N/A 39117885
    876728 8upo:1 (5.5) BS01 rna ? GO:0002181 ... P61175 39117885
    876729 8upo:2 (5.5) BS01 rna N/A N/A N/A 39117885
    876730 8upo:3 (5.5) BS01 rna N/A N/A N/A 39117885
    876731 8upo:4 (5.5) BS01 rna N/A N/A N/A 39117885
    876732 8upo:9 (5.5) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    876733 8upo:AA (5.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    876734 8upo:AA (5.5) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    876735 8upo:AA (5.5) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    876736 8upo:AB (5.5) BS01 dna ? GO:0001073 ... C3SK02 39117885
    876737 8upo:AE (5.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876738 8upo:AE (5.5) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876739 8upo:AE (5.5) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876740 8upo:AE (5.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876741 8upo:AE (5.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876742 8upo:AE (5.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    876743 8upo:C (5.5) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    876744 8upo:E (5.5) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    876745 8upo:F (5.5) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    876746 8upo:G (5.5) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    876747 8upo:I (5.5) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    876748 8upo:J (5.5) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    876749 8upo:K (5.5) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    876750 8upo:K (5.5) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    876751 8upo:L (5.5) BS01 rna ? GO:0002181 ... P02358 39117885
    876752 8upo:M (5.5) BS01 rna ? GO:0000028 ... P02359 39117885
    876753 8upo:M (5.5) BS02 rna ? GO:0000028 ... P02359 39117885
    876754 8upo:N (5.5) BS01 rna N/A N/A N/A 39117885
    876755 8upo:O (5.5) BS01 rna N/A N/A N/A 39117885
    876756 8upo:P (5.5) BS01 rna N/A N/A N/A 39117885
    876757 8upo:Q (5.5) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    876758 8upo:R (5.5) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    876759 8upo:S (5.5) BS01 rna N/A N/A N/A 39117885
    876760 8upo:T (5.5) BS01 rna N/A N/A N/A 39117885
    876761 8upo:T (5.5) BS02 rna N/A N/A N/A 39117885
    876762 8upo:U (5.5) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    876763 8upo:V (5.5) BS01 rna N/A N/A N/A 39117885
    876764 8upo:W (5.5) BS01 rna N/A N/A N/A 39117885
    876765 8upo:X (5.5) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    876766 8upo:X (5.5) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    876767 8upo:Y (5.5) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    876768 8upo:b (5.5) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    876769 8upo:b (5.5) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    876770 8upo:c (5.5) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    876771 8upo:e (5.5) BS01 rna N/A N/A N/A 39117885
    876772 8upo:f (5.5) BS01 rna N/A N/A N/A 39117885
    876773 8upo:f (5.5) BS02 rna N/A N/A N/A 39117885
    876774 8upo:g (5.5) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    876775 8upo:h (5.5) BS01 rna ? GO:0000027 ... P60422 39117885
    876776 8upo:i (5.5) BS01 rna N/A N/A N/A 39117885
    876777 8upo:j (5.5) BS01 rna ? GO:0000027 ... P60438 39117885
    876778 8upo:k (5.5) BS01 rna N/A N/A N/A 39117885
    876779 8upo:l (5.5) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    876780 8upo:m (5.5) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    876781 8upo:n (5.5) BS01 rna N/A N/A N/A 39117885
    876782 8upo:n (5.5) BS02 rna N/A N/A N/A 39117885
    876783 8upo:n (5.5) BS03 rna N/A N/A N/A 39117885
    876784 8upo:o (5.5) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    876785 8upo:p (5.5) BS01 rna ? GO:0002181 ... C3SR17 39117885
    876786 8upo:q (5.5) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    876787 8upo:r (5.5) BS01 rna N/A N/A N/A 39117885
    876788 8upo:s (5.5) BS01 rna N/A N/A N/A 39117885
    876789 8upo:t (5.5) BS01 rna ? GO:0003735 ... S1NW45 39117885
    876790 8upo:t (5.5) BS02 rna ? GO:0003735 ... S1NW45 39117885
    876791 8upo:u (5.5) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    876792 8upo:v (5.5) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    876793 8upo:v (5.5) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    876794 8upo:w (5.5) BS01 rna N/A N/A N/A 39117885
    876795 8upo:x (5.5) BS01 rna N/A N/A N/A 39117885
    876796 8upo:x (5.5) BS02 rna N/A N/A N/A 39117885
    876797 8upo:y (5.5) BS01 rna N/A N/A N/A 39117885
    876798 8upo:z (5.5) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    876799 8upp:A (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876800 8upp:A (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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