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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    876201 8ujf:B (2.87) BS01 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    876202 8ujf:B (2.87) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    876203 8ujf:B (2.87) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    876204 8ujg:A (2.27) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    876205 8ujg:A (2.27) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    876206 8ujg:A (2.27) BS03 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    876207 8ujg:B (2.27) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    876208 8ujg:B (2.27) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    876209 8ujg:B (2.27) BS03 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    876210 8ujh:A (2.65) BS01 peptide 2.4.1.41 N/A A0A125YMZ8 38710711
    876211 8ujh:A (2.65) BS02 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    876212 8ujh:A (2.65) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    876213 8ujh:A (2.65) BS04 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    876214 8ujm:A (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    876215 8ujm:B (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    876216 8ujt:A (2.31) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876217 8ujt:A (2.31) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876218 8ujt:A (2.31) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876219 8ujt:A (2.31) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876220 8ujt:A (2.31) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876221 8ujv:A (2.23) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876222 8ujv:A (2.23) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876223 8ujv:A (2.23) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876224 8ujv:A (2.23) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876225 8ujv:A (2.23) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876226 8ujx:A (2.17) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876227 8ujx:A (2.17) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876228 8ujx:A (2.17) BS03 XG4 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876229 8ujx:A (2.17) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876230 8ujx:A (2.17) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876231 8ujy:A (2.01) BS01 VV3 ? GO:0000122 ... P61964 38085679
    876232 8ujy:B (2.01) BS01 VV3 ? GO:0000122 ... P61964 38085679
    876233 8uk2:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876234 8uk2:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876235 8uk2:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876236 8uk2:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876237 8uk2:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876238 8uk2:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876239 8uk2:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876240 8uk2:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876241 8uk2:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876242 8uk2:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876243 8uk2:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876244 8uk2:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876245 8uk2:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876246 8uk2:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876247 8uk2:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876248 8uk2:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876249 8uk2:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876250 8uk2:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876251 8uk2:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876252 8uk2:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876253 8uk2:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876254 8uk2:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876255 8uk2:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876256 8uk2:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876257 8uk2:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876258 8uk2:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876259 8uk2:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876260 8uk2:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876261 8uk2:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876262 8uk2:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876263 8uk2:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876264 8uk2:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876265 8uk2:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876266 8uk2:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876267 8uk2:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876268 8uk2:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876269 8uk2:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876270 8uk2:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876271 8uk2:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876272 8uk2:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876273 8uk2:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876274 8uk2:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876275 8uk2:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876276 8uk2:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876277 8uk2:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876278 8uk2:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876279 8uk2:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876280 8uk2:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876281 8uk2:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876282 8uk2:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876283 8uk2:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876284 8uk2:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876285 8uk2:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876286 8uk2:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876287 8uk3:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876288 8uk3:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876289 8uk3:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876290 8uk3:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876291 8uk3:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876292 8uk3:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876293 8uk3:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876294 8uk3:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876295 8uk3:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876296 8uk3:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876297 8uk3:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876298 8uk3:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876299 8uk3:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876300 8uk3:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876301 8uk3:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876302 8uk3:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876303 8uk3:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876304 8uk3:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876305 8uk3:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876306 8uk3:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876307 8uk3:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876308 8uk3:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876309 8uk3:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876310 8uk3:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876311 8uk3:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876312 8uk3:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876313 8uk3:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876314 8uk3:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876315 8uk3:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876316 8uk3:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876317 8uk3:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876318 8uk3:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876319 8uk3:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876320 8uk3:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876321 8uk3:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876322 8uk3:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876323 8uk3:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876324 8uk3:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876325 8uk3:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876326 8uk3:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876327 8uk3:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876328 8uk3:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876329 8uk3:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876330 8uk3:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876331 8uk3:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876332 8uk3:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876333 8uk3:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876334 8uk3:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876335 8uk3:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876336 8uk3:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876337 8uk3:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876338 8uk3:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    876339 8uk3:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    876340 8uk3:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    876341 8uk4:A (3.02) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876342 8uk4:A (3.02) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876343 8uk4:A (3.02) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876344 8uk4:A (3.02) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    876345 8uk5:A (1.4) BS01 peptide ? N/A Q9ULI0 38733345
    876346 8uk6:A (2.73) BS01 ZN 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    876347 8uk6:A (2.73) BS02 WVK 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    876348 8uk9:A (3.1) BS01 dna ? GO:0003677 ... P04527 38177685
    876349 8uk9:B (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876350 8uk9:B (3.1) BS02 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    876351 8uk9:B (3.1) BS03 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    876352 8uk9:B (3.1) BS04 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876353 8uk9:C (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876354 8uk9:C (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876355 8uk9:C (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    876356 8uk9:C (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    876357 8uk9:D (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876358 8uk9:D (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876359 8uk9:D (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    876360 8uk9:D (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    876361 8uk9:E (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876362 8uk9:E (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    876363 8uk9:K (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876364 8uk9:K (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876365 8uk9:K (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    876366 8uk9:K (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    876367 8uk9:L (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876368 8uk9:L (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876369 8uk9:L (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    876370 8uk9:L (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    876371 8uk9:M (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876372 8uk9:M (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    876373 8uk9:M (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    876374 8uk9:M (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    876375 8uk9:N (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    876376 8uk9:N (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    876377 8uk9:Q (3.1) BS01 dna ? GO:0003677 ... P04527 38177685
    876378 8uk9:Q (3.1) BS02 dna ? GO:0003677 ... P04527 38177685
    876379 8uke:A (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876380 8uke:A (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876381 8uke:A (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876382 8uke:B (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876383 8uke:B (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876384 8uke:B (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876385 8uke:C (2.4) BS01 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876386 8uke:C (2.4) BS02 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876387 8uke:C (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876388 8uke:D (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876389 8uke:D (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876390 8uke:E (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876391 8uke:E (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876392 8uke:E (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876393 8uke:F (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876394 8uke:F (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    876395 8ukq:A (3.5) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876396 8ukq:A (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876397 8ukq:A (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876398 8ukq:A (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876399 8ukq:A (3.5) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    876400 8ukq:B (3.5) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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