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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    875801 8ugq:F (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875802 8ugq:F (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    875803 8ugq:G (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875804 8ugq:G (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    875805 8ugq:H (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875806 8ugq:H (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    875807 8ugq:I (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875808 8ugq:I (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    875809 8ugq:J (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875810 8ugq:J (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    875811 8ugq:K (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875812 8ugq:K (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    875813 8ugr:1B (6.5) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875814 8ugr:1D (6.5) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875815 8ugr:1E (6.5) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875816 8ugr:1F (6.5) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875817 8ugr:1F (6.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875818 8ugr:1G (6.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875819 8ugr:1G (6.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875820 8ugr:1G (6.5) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875821 8ugr:1I (6.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875822 8ugr:1I (6.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875823 8ugr:1O (6.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875824 8ugr:1P (6.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875825 8ugr:1R (6.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875826 8ugr:1U (6.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875827 8ugr:1W (6.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875828 8ugr:1h (6.5) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    875829 8ugr:1n (6.5) BS01 EHZ N/A N/A K7GSE5 38811722
    875830 8ugr:1q (6.5) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    875831 8ugr:3C (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875832 8ugr:3C (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875833 8ugr:3D (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875834 8ugr:3E (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875835 8ugr:3P (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875836 8ugr:3P (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875837 8ugr:3Q (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875838 8ugr:3R (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875839 8ugr:4A (6.5) BS01 HEA N/A GO:0004129 ... O79876 38811722
    875840 8ugr:4A (6.5) BS02 HEA N/A GO:0004129 ... O79876 38811722
    875841 8ugr:4A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    875842 8ugr:4A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    875843 8ugr:4B (6.5) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    875844 8ugr:4F (6.5) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    875845 8ugr:5B (6.5) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875846 8ugr:5E (6.5) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875847 8ugr:5F (6.5) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875848 8ugr:5F (6.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875849 8ugr:5G (6.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875850 8ugr:5G (6.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875851 8ugr:5G (6.5) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875852 8ugr:5I (6.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875853 8ugr:5I (6.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875854 8ugr:5O (6.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875855 8ugr:5O (6.5) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    875856 8ugr:5P (6.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875857 8ugr:5R (6.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875858 8ugr:5T (6.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875859 8ugr:5U (6.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875860 8ugr:5W (6.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875861 8ugr:5n (6.5) BS01 EHZ N/A N/A K7GSE5 38811722
    875862 8ugr:5q (6.5) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    875863 8ugr:6C (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875864 8ugr:6C (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875865 8ugr:6D (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875866 8ugr:6E (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875867 8ugr:6P (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875868 8ugr:6P (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875869 8ugr:6Q (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875870 8ugr:6R (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875871 8ugr:8A (6.5) BS01 HEA N/A GO:0004129 ... O79876 38811722
    875872 8ugr:8A (6.5) BS02 HEA N/A GO:0004129 ... O79876 38811722
    875873 8ugr:8A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    875874 8ugr:8A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    875875 8ugr:8B (6.5) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    875876 8ugr:8F (6.5) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    875877 8ugs:A (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    875878 8ugs:A (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    875879 8ugs:A (3.2) BS03 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    875880 8ugs:B (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    875881 8ugs:B (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    875882 8ugs:B (3.2) BS03 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    875883 8ugt:A (2.65) BS01 WOF N/A GO:0004565 ... A0A174ZZA3 39211470
    875884 8ugy:R (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    875885 8ugy:R (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    875886 8ugy:R (3.31) BS03 WRU ? GO:0001586 ... P28566 38630816
    875887 8ugz:A (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    875888 8ugz:B (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    875889 8ugz:C (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    875890 8ugz:D (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    875891 8uh0:A (2.73) BS01 WRN ? GO:0005085 ... Q07890 38156904
    875892 8uh3:D (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    875893 8uh3:D (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    875894 8uh3:D (3.31) BS03 CLR ? GO:0001586 ... P28566 38630816
    875895 8uh3:D (3.31) BS04 WOQ ? GO:0001586 ... P28566 38630816
    875896 8uh4:1 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875897 8uh4:1 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875898 8uh4:2 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875899 8uh4:2 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875900 8uh4:3 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875901 8uh4:3 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875902 8uh4:4 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875903 8uh4:4 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875904 8uh4:5 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875905 8uh4:5 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875906 8uh4:6 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875907 8uh4:6 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875908 8uh4:7 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875909 8uh4:7 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875910 8uh4:8 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875911 8uh4:8 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875912 8uh4:A (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875913 8uh4:A (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875914 8uh4:B (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875915 8uh4:B (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875916 8uh4:C (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875917 8uh4:C (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875918 8uh4:D (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875919 8uh4:D (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875920 8uh4:E (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875921 8uh4:E (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875922 8uh4:F (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875923 8uh4:F (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875924 8uh4:G (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875925 8uh4:G (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875926 8uh4:H (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875927 8uh4:H (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875928 8uh4:I (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875929 8uh4:I (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875930 8uh4:J (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875931 8uh4:J (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875932 8uh4:K (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875933 8uh4:K (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875934 8uh4:L (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875935 8uh4:L (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875936 8uh4:M (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875937 8uh4:M (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875938 8uh4:N (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875939 8uh4:N (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875940 8uh4:O (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875941 8uh4:O (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875942 8uh4:P (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875943 8uh4:P (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875944 8uh4:Q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875945 8uh4:Q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875946 8uh4:R (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875947 8uh4:R (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875948 8uh4:S (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875949 8uh4:S (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875950 8uh4:T (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875951 8uh4:T (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875952 8uh4:U (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875953 8uh4:U (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875954 8uh4:V (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875955 8uh4:V (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875956 8uh4:W (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875957 8uh4:W (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875958 8uh4:X (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875959 8uh4:X (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875960 8uh4:Y (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875961 8uh4:Y (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875962 8uh4:Z (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875963 8uh4:Z (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875964 8uh4:a (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875965 8uh4:a (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875966 8uh4:b (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875967 8uh4:b (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875968 8uh4:c (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875969 8uh4:c (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875970 8uh4:d (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875971 8uh4:d (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875972 8uh4:e (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875973 8uh4:e (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875974 8uh4:f (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875975 8uh4:f (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875976 8uh4:g (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875977 8uh4:g (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875978 8uh4:h (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875979 8uh4:h (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875980 8uh4:i (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875981 8uh4:i (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875982 8uh4:j (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875983 8uh4:j (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875984 8uh4:k (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875985 8uh4:k (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875986 8uh4:l (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875987 8uh4:l (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875988 8uh4:m (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875989 8uh4:m (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875990 8uh4:n (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875991 8uh4:n (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875992 8uh4:o (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875993 8uh4:o (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875994 8uh4:p (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875995 8uh4:p (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875996 8uh4:q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875997 8uh4:q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    875998 8uh4:r (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    875999 8uh4:r (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    876000 8uh4:s (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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