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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    875601 8ugh:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875602 8ugh:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875603 8ugh:1I (2.1) BS03 AYA N/A GO:0003954 ... A0A286ZUN9 38811722
    875604 8ugh:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875605 8ugh:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875606 8ugh:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875607 8ugh:1U (2.1) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875608 8ugh:1W (2.1) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875609 8ugh:1h (2.1) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    875610 8ugh:1n (2.1) BS01 EHZ N/A N/A K7GSE5 38811722
    875611 8ugh:1q (2.1) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    875612 8ugh:3C (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875613 8ugh:3C (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875614 8ugh:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875615 8ugh:3E (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875616 8ugh:3P (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875617 8ugh:3P (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875618 8ugh:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875619 8ugh:3R (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875620 8ugh:4A (2.1) BS01 HEA N/A GO:0004129 ... O79876 38811722
    875621 8ugh:4A (2.1) BS02 HEA N/A GO:0004129 ... O79876 38811722
    875622 8ugh:4A (2.1) BS03 CU N/A GO:0004129 ... O79876 38811722
    875623 8ugh:4A (2.1) BS04 MG N/A GO:0004129 ... O79876 38811722
    875624 8ugh:4B (2.1) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    875625 8ugh:4F (2.1) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    875626 8ugi:1B (2.1) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875627 8ugi:1D (2.1) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875628 8ugi:1E (2.1) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875629 8ugi:1F (2.1) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875630 8ugi:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875631 8ugi:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875632 8ugi:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875633 8ugi:1G (2.1) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875634 8ugi:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875635 8ugi:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875636 8ugi:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875637 8ugi:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875638 8ugi:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875639 8ugi:1U (2.1) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875640 8ugi:1W (2.1) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875641 8ugi:1d (2.1) BS01 AME N/A GO:0005737 ... A0A480JRW3 38811722
    875642 8ugi:1h (2.1) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    875643 8ugi:1n (2.1) BS01 EHZ N/A N/A K7GSE5 38811722
    875644 8ugi:3C (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875645 8ugi:3C (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875646 8ugi:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875647 8ugi:3E (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875648 8ugi:3P (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875649 8ugi:3P (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875650 8ugi:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875651 8ugi:3R (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875652 8ugi:4A (2.1) BS01 HEA N/A GO:0004129 ... O79876 38811722
    875653 8ugi:4A (2.1) BS02 HEA N/A GO:0004129 ... O79876 38811722
    875654 8ugi:4A (2.1) BS03 CU N/A GO:0004129 ... O79876 38811722
    875655 8ugi:4A (2.1) BS04 MG N/A GO:0004129 ... O79876 38811722
    875656 8ugi:4B (2.1) BS01 HEA N/A GO:0004129 ... P50667 38811722
    875657 8ugi:4B (2.1) BS02 CUA N/A GO:0004129 ... P50667 38811722
    875658 8ugi:4F (2.1) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    875659 8ugj:1B (2.3) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875660 8ugj:1D (2.3) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875661 8ugj:1D (2.3) BS02 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875662 8ugj:1E (2.3) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875663 8ugj:1F (2.3) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875664 8ugj:1F (2.3) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875665 8ugj:1G (2.3) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875666 8ugj:1G (2.3) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875667 8ugj:1G (2.3) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875668 8ugj:1I (2.3) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875669 8ugj:1I (2.3) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875670 8ugj:1O (2.3) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875671 8ugj:1P (2.3) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875672 8ugj:1R (2.3) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875673 8ugj:1U (2.3) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875674 8ugj:1W (2.3) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875675 8ugj:1h (2.3) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    875676 8ugj:1n (2.3) BS01 EHZ N/A N/A K7GSE5 38811722
    875677 8ugj:1q (2.3) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    875678 8ugj:3C (2.3) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875679 8ugj:3C (2.3) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875680 8ugj:3D (2.3) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875681 8ugj:3E (2.3) BS01 FES N/A GO:0005739 ... A0A4X1TWD8 38811722
    875682 8ugj:3P (2.3) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875683 8ugj:3P (2.3) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875684 8ugj:3Q (2.3) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875685 8ugj:3R (2.3) BS01 FES N/A GO:0005739 ... A0A4X1TWD8 38811722
    875686 8ugj:4A (2.3) BS01 HEA N/A GO:0004129 ... O79876 38811722
    875687 8ugj:4A (2.3) BS02 HEA N/A GO:0004129 ... O79876 38811722
    875688 8ugj:4A (2.3) BS03 CU N/A GO:0004129 ... O79876 38811722
    875689 8ugj:4A (2.3) BS04 MG N/A GO:0004129 ... O79876 38811722
    875690 8ugj:4B (2.3) BS01 HEA N/A GO:0004129 ... Q69GF7 38811722
    875691 8ugj:4B (2.3) BS02 CUA N/A GO:0004129 ... Q69GF7 38811722
    875692 8ugj:4F (2.3) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    875693 8ugj:8A (2.3) BS01 HEA N/A GO:0004129 ... O79876 38811722
    875694 8ugj:8A (2.3) BS02 HEA N/A GO:0004129 ... O79876 38811722
    875695 8ugj:8A (2.3) BS03 CU N/A GO:0004129 ... O79876 38811722
    875696 8ugj:8A (2.3) BS04 MG N/A GO:0004129 ... O79876 38811722
    875697 8ugj:8B (2.3) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    875698 8ugj:8F (2.3) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    875699 8ugk:3C (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875700 8ugk:3C (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875701 8ugk:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875702 8ugk:3E (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875703 8ugk:3P (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875704 8ugk:3P (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875705 8ugk:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    875706 8ugk:3R (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    875707 8ugl:4A (3.0) BS01 HEA N/A GO:0004129 ... O79876 38811722
    875708 8ugl:4A (3.0) BS02 HEA N/A GO:0004129 ... O79876 38811722
    875709 8ugl:4A (3.0) BS03 CU N/A GO:0004129 ... O79876 38811722
    875710 8ugl:4A (3.0) BS04 MG N/A GO:0004129 ... O79876 38811722
    875711 8ugl:4B (3.0) BS01 HEA N/A GO:0004129 ... Q69GF7 38811722
    875712 8ugl:4B (3.0) BS02 CUA N/A GO:0004129 ... Q69GF7 38811722
    875713 8ugl:4F (3.0) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    875714 8ugn:1B (2.7) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875715 8ugn:1D (2.7) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875716 8ugn:1D (2.7) BS02 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875717 8ugn:1E (2.7) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875718 8ugn:1F (2.7) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875719 8ugn:1F (2.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875720 8ugn:1G (2.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875721 8ugn:1G (2.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875722 8ugn:1G (2.7) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875723 8ugn:1I (2.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875724 8ugn:1I (2.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875725 8ugn:1O (2.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875726 8ugn:1P (2.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875727 8ugn:1R (2.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875728 8ugn:1T (2.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875729 8ugn:1U (2.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875730 8ugn:1W (2.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875731 8ugn:1h (2.7) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    875732 8ugn:1n (2.7) BS01 EHZ N/A N/A K7GSE5 38811722
    875733 8ugn:1q (2.7) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    875734 8ugn:3C (2.7) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875735 8ugn:3C (2.7) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875736 8ugn:3D (2.7) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875737 8ugn:3E (2.7) BS01 FES N/A GO:0005739 ... A0A4X1TWD8 38811722
    875738 8ugn:3P (2.7) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875739 8ugn:3P (2.7) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    875740 8ugn:3Q (2.7) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    875741 8ugn:3R (2.7) BS01 FES N/A GO:0005739 ... A0A4X1TWD8 38811722
    875742 8ugn:4A (2.7) BS01 HEA N/A GO:0004129 ... O79876 38811722
    875743 8ugn:4A (2.7) BS02 HEA N/A GO:0004129 ... O79876 38811722
    875744 8ugn:4A (2.7) BS03 CU N/A GO:0004129 ... O79876 38811722
    875745 8ugn:4A (2.7) BS04 MG N/A GO:0004129 ... O79876 38811722
    875746 8ugn:4B (2.7) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    875747 8ugn:4F (2.7) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    875748 8ugn:5B (2.7) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875749 8ugn:5D (2.7) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875750 8ugn:5D (2.7) BS02 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875751 8ugn:5E (2.7) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875752 8ugn:5F (2.7) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875753 8ugn:5F (2.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875754 8ugn:5G (2.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875755 8ugn:5G (2.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875756 8ugn:5G (2.7) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875757 8ugn:5I (2.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875758 8ugn:5I (2.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875759 8ugn:5O (2.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875760 8ugn:5O (2.7) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    875761 8ugn:5P (2.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875762 8ugn:5R (2.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875763 8ugn:5U (2.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875764 8ugn:5W (2.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875765 8ugn:5h (2.7) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    875766 8ugn:5n (2.7) BS01 EHZ N/A N/A K7GSE5 38811722
    875767 8ugn:5q (2.7) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    875768 8ugn:8A (2.7) BS01 HEA N/A GO:0004129 ... O79876 38811722
    875769 8ugn:8A (2.7) BS02 HEA N/A GO:0004129 ... O79876 38811722
    875770 8ugn:8A (2.7) BS03 CU N/A GO:0004129 ... O79876 38811722
    875771 8ugn:8A (2.7) BS04 MG N/A GO:0004129 ... O79876 38811722
    875772 8ugn:8B (2.7) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    875773 8ugn:8F (2.7) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    875774 8ugp:1B (2.0) BS01 peptide N/A GO:0046872 ... A0A4X1VVS8 38811722
    875775 8ugp:1B (2.0) BS02 peptide N/A GO:0046872 ... A0A4X1VVS8 38811722
    875776 8ugp:1B (2.0) BS03 peptide N/A GO:0046872 ... A0A4X1VVS8 38811722
    875777 8ugp:1B (2.0) BS04 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875778 8ugp:1C (2.0) BS01 peptide N/A GO:0003954 ... A0A286ZNN4 38811722
    875779 8ugp:1C (2.0) BS02 peptide N/A GO:0003954 ... A0A286ZNN4 38811722
    875780 8ugp:1C (2.0) BS03 peptide N/A GO:0003954 ... A0A286ZNN4 38811722
    875781 8ugp:1D (2.0) BS01 peptide N/A GO:0051539 ... A0A8D0QM68 38811722
    875782 8ugp:1D (2.0) BS02 peptide N/A GO:0051539 ... A0A8D0QM68 38811722
    875783 8ugp:1D (2.0) BS03 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875784 8ugp:1I (2.0) BS01 peptide N/A GO:0003954 ... A0A286ZUN9 38811722
    875785 8ugp:1I (2.0) BS02 peptide N/A GO:0003954 ... A0A286ZUN9 38811722
    875786 8ugp:1I (2.0) BS03 peptide N/A GO:0003954 ... A0A286ZUN9 38811722
    875787 8ugp:1I (2.0) BS04 peptide N/A GO:0003954 ... A0A286ZUN9 38811722
    875788 8ugp:1I (2.0) BS05 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875789 8ugp:1I (2.0) BS06 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875790 8ugp:1q (2.0) BS01 peptide N/A GO:0005739 ... A0A4X1SJF2 38811722
    875791 8ugp:1q (2.0) BS02 peptide N/A GO:0005739 ... A0A4X1SJF2 38811722
    875792 8ugq:A (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875793 8ugq:B (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875794 8ugq:B (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    875795 8ugq:C (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875796 8ugq:C (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    875797 8ugq:D (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875798 8ugq:D (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    875799 8ugq:E (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    875800 8ugq:E (3.17) BS02 dna ? GO:0003677 ... P06448 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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