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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    875201 8ueq:1B (3.4) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875202 8ueq:1B (3.4) BS02 U10 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875203 8ueq:1D (3.4) BS01 U10 N/A GO:0051539 ... A0A8D0QM68 38811722
    875204 8ueq:1E (3.4) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875205 8ueq:1F (3.4) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875206 8ueq:1F (3.4) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875207 8ueq:1G (3.4) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875208 8ueq:1G (3.4) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875209 8ueq:1G (3.4) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875210 8ueq:1H (3.4) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    875211 8ueq:1I (3.4) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875212 8ueq:1I (3.4) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875213 8ueq:1O (3.4) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875214 8ueq:1P (3.4) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875215 8ueq:1R (3.4) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875216 8ueq:1T (3.4) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875217 8ueq:1U (3.4) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875218 8ueq:1W (3.4) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875219 8ueq:1n (3.4) BS01 EHZ N/A N/A K7GSE5 38811722
    875220 8uer:1B (3.5) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875221 8uer:1B (3.5) BS02 U10 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875222 8uer:1D (3.5) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875223 8uer:1E (3.5) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875224 8uer:1F (3.5) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875225 8uer:1F (3.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875226 8uer:1G (3.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875227 8uer:1G (3.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875228 8uer:1G (3.5) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875229 8uer:1H (3.5) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    875230 8uer:1I (3.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875231 8uer:1I (3.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875232 8uer:1O (3.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875233 8uer:1P (3.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875234 8uer:1R (3.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875235 8uer:1T (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875236 8uer:1U (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875237 8uer:1W (3.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875238 8uer:1n (3.5) BS01 EHZ N/A N/A K7GSE5 38811722
    875239 8ues:1B (3.6) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875240 8ues:1D (3.6) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875241 8ues:1E (3.6) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875242 8ues:1F (3.6) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875243 8ues:1F (3.6) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875244 8ues:1G (3.6) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875245 8ues:1G (3.6) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875246 8ues:1G (3.6) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875247 8ues:1I (3.6) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875248 8ues:1I (3.6) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875249 8ues:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875250 8ues:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875251 8ues:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875252 8ues:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875253 8ues:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875254 8ues:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875255 8ues:1n (3.6) BS01 EHZ N/A N/A K7GSE5 38811722
    875256 8uet:1B (3.7) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875257 8uet:1D (3.7) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875258 8uet:1E (3.7) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875259 8uet:1F (3.7) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875260 8uet:1F (3.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875261 8uet:1G (3.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875262 8uet:1G (3.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875263 8uet:1G (3.7) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875264 8uet:1I (3.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875265 8uet:1I (3.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875266 8uet:1O (3.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875267 8uet:1P (3.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875268 8uet:1R (3.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875269 8uet:1T (3.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875270 8uet:1W (3.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875271 8uet:1n (3.7) BS01 EHZ N/A N/A K7GSE5 38811722
    875272 8ueu:1B (3.6) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875273 8ueu:1D (3.6) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875274 8ueu:1E (3.6) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875275 8ueu:1F (3.6) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875276 8ueu:1F (3.6) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875277 8ueu:1G (3.6) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875278 8ueu:1G (3.6) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875279 8ueu:1G (3.6) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875280 8ueu:1I (3.6) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875281 8ueu:1I (3.6) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875282 8ueu:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875283 8ueu:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875284 8ueu:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875285 8ueu:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875286 8ueu:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875287 8ueu:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875288 8ueu:1n (3.6) BS01 EHZ N/A N/A K7GSE5 38811722
    875289 8uev:1B (3.7) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875290 8uev:1D (3.7) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875291 8uev:1E (3.7) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875292 8uev:1F (3.7) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875293 8uev:1F (3.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875294 8uev:1G (3.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875295 8uev:1G (3.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875296 8uev:1G (3.7) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875297 8uev:1I (3.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875298 8uev:1I (3.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875299 8uev:1O (3.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875300 8uev:1P (3.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875301 8uev:1R (3.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875302 8uev:1T (3.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875303 8uev:1W (3.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875304 8uev:1n (3.7) BS01 EHZ N/A N/A K7GSE5 38811722
    875305 8uew:1B (3.6) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875306 8uew:1D (3.6) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875307 8uew:1E (3.6) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875308 8uew:1F (3.6) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875309 8uew:1F (3.6) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875310 8uew:1G (3.6) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875311 8uew:1G (3.6) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875312 8uew:1G (3.6) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875313 8uew:1I (3.6) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875314 8uew:1I (3.6) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875315 8uew:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875316 8uew:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875317 8uew:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875318 8uew:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875319 8uew:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875320 8uew:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875321 8uew:1n (3.6) BS01 EHZ N/A N/A K7GSE5 38811722
    875322 8uex:1B (3.9) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875323 8uex:1D (3.9) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875324 8uex:1E (3.9) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875325 8uex:1F (3.9) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875326 8uex:1F (3.9) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875327 8uex:1G (3.9) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875328 8uex:1G (3.9) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875329 8uex:1G (3.9) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875330 8uex:1I (3.9) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875331 8uex:1I (3.9) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875332 8uex:1O (3.9) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875333 8uex:1O (3.9) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    875334 8uex:1P (3.9) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875335 8uex:1R (3.9) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875336 8uex:1T (3.9) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875337 8uex:1U (3.9) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875338 8uex:1W (3.9) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875339 8uex:1n (3.9) BS01 EHZ N/A N/A K7GSE5 38811722
    875340 8uey:1B (3.6) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875341 8uey:1D (3.6) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875342 8uey:1E (3.6) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875343 8uey:1F (3.6) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875344 8uey:1F (3.6) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875345 8uey:1G (3.6) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875346 8uey:1G (3.6) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875347 8uey:1G (3.6) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875348 8uey:1I (3.6) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875349 8uey:1I (3.6) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875350 8uey:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875351 8uey:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875352 8uey:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875353 8uey:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875354 8uey:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875355 8uey:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875356 8uey:1n (3.6) BS01 EHZ N/A N/A K7GSE5 38811722
    875357 8uez:1B (3.5) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875358 8uez:1B (3.5) BS02 U10 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875359 8uez:1D (3.5) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875360 8uez:1E (3.5) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875361 8uez:1F (3.5) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875362 8uez:1F (3.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875363 8uez:1G (3.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875364 8uez:1G (3.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875365 8uez:1G (3.5) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875366 8uez:1H (3.5) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    875367 8uez:1I (3.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875368 8uez:1I (3.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875369 8uez:1O (3.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875370 8uez:1P (3.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875371 8uez:1R (3.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875372 8uez:1T (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875373 8uez:1U (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875374 8uez:1W (3.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875375 8uez:1n (3.5) BS01 EHZ N/A N/A K7GSE5 38811722
    875376 8uf3:A (2.45) BS01 HEC N/A N/A B4RQ30 38330683
    875377 8uf3:A (2.45) BS02 HEC N/A N/A B4RQ30 38330683
    875378 8uf3:B (2.45) BS01 HEC N/A N/A B4RQ30 38330683
    875379 8uf3:B (2.45) BS02 HEC N/A N/A B4RQ30 38330683
    875380 8uf4:A (2.43) BS01 CA N/A N/A Q14118 N/A
    875381 8uf5:A (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 28729722
    875382 8uf5:A (2.5) BS02 WIJ 2.4.1.5 GO:0009250 ... P08987 28729722
    875383 8uf5:B (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 28729722
    875384 8uf5:B (2.5) BS02 WIJ 2.4.1.5 GO:0009250 ... P08987 28729722
    875385 8uf6:A (2.9) BS01 WRZ N/A N/A P97438 N/A
    875386 8uf6:A (2.9) BS02 16C N/A N/A P97438 N/A
    875387 8uf6:B (2.9) BS01 WRZ N/A N/A P97438 N/A
    875388 8ufb:R (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    875389 8ufb:S (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    875390 8ufb:T (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    875391 8ufb:U (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    875392 8ufb:V (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    875393 8ufb:V (3.89) BS02 CA ? GO:0005509 ... P98155 38176410
    875394 8ufb:W (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    875395 8ufb:W (3.89) BS02 CA ? GO:0005509 ... P98155 38176410
    875396 8ufb:X (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    875397 8ufb:X (3.89) BS02 CA ? GO:0005509 ... P98155 38176410
    875398 8ufb:Y (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    875399 8ufb:Y (3.89) BS02 CA ? GO:0005509 ... P98155 38176410
    875400 8ufc:V (3.09) BS01 CA ? N/A P98155 38176410

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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