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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    875001 8udt:A (2.829) BS01 WGF 2.7.10.1 GO:0004672 ... P22607 38267212
    875002 8udt:B (2.829) BS01 WGF 2.7.10.1 GO:0004672 ... P22607 38267212
    875003 8udt:C (2.829) BS01 WGF 2.7.10.1 GO:0004672 ... P22607 38267212
    875004 8udu:A (1.737) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    875005 8udu:B (1.737) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    875006 8udv:A (2.348) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    875007 8udv:B (2.348) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    875008 8udv:C (2.348) BS01 WIQ 2.7.10.1 GO:0004672 ... P22607 38267212
    875009 8ue2:A (3.0) BS01 Q6F N/A N/A P97438 N/A
    875010 8ue2:B (3.0) BS01 Q6F N/A N/A P97438 N/A
    875011 8ue9:A (3.0) BS01 WUU N/A N/A P97438 N/A
    875012 8ue9:B (3.0) BS01 WUU N/A N/A P97438 N/A
    875013 8uec:A (3.0) BS01 16C N/A N/A P97438 N/A
    875014 8uec:A (3.0) BS02 WUZ N/A N/A P97438 N/A
    875015 8uec:B (3.0) BS01 WUZ N/A N/A P97438 N/A
    875016 8uee:F (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    875017 8uee:F (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    875018 8uee:H (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    875019 8uee:H (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    875020 8uee:I (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    875021 8uee:J (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    875022 8uee:J (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    875023 8uee:K (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    875024 8uee:K (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    875025 8uee:L (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    875026 8uee:L (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    875027 8uee:M (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    875028 8uee:M (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    875029 8uej:AA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875030 8uej:AB (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875031 8uej:AC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875032 8uej:AC (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875033 8uej:AG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875034 8uej:AN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875035 8uej:AS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875036 8uej:AT (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875037 8uej:AU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875038 8uej:AZ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875039 8uej:BE (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875040 8uej:BE (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875041 8uej:BG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875042 8uej:BK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875043 8uej:BK (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875044 8uej:BL (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875045 8uej:BM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875046 8uej:BM (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875047 8uej:BQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875048 8uej:BW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875049 8uej:BX (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875050 8uej:BY (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875051 8uej:BY (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875052 8uej:CC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875053 8uej:CC (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875054 8uej:CE (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875055 8uej:CI (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875056 8uej:CK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875057 8uej:CP (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875058 8uej:CU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875059 8uej:CW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875060 8uej:DN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875061 8uej:DS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875062 8uej:DT (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875063 8uej:DY (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875064 8uej:EA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875065 8uej:EF (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875066 8uej:EK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875067 8uej:EL (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875068 8uej:EM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875069 8uej:EQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875070 8uej:EQ (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875071 8uej:ER (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875072 8uej:ES (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875073 8uej:EW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875074 8uej:EX (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875075 8uej:EY (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875076 8uej:FC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875077 8uej:FD (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875078 8uej:FJ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875079 8uej:FK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875080 8uej:FO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875081 8uej:FP (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875082 8uej:FQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875083 8uej:FU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875084 8uej:FW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875085 8uej:GB (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875086 8uej:GG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875087 8uej:GN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875088 8uej:GO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875089 8uej:GS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875090 8uej:GT (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875091 8uej:GU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875092 8uej:HC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875093 8uej:HD (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875094 8uej:HE (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875095 8uej:HI (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875096 8uej:HJ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875097 8uej:HK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875098 8uej:HO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875099 8uej:HP (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875100 8uej:HQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875101 8uej:HU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875102 8uej:HW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875103 8uej:HW (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875104 8uej:IA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875105 8uej:IA (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875106 8uej:IB (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875107 8uej:IC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875108 8uej:IH (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875109 8uej:II (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875110 8uej:IM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875111 8uej:IN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875112 8uej:IT (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875113 8uej:IY (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875114 8uej:IZ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875115 8uej:JA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875116 8uej:JA (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875117 8uej:JF (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875118 8uej:JG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875119 8uej:JK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875120 8uej:JK (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875121 8uej:JL (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875122 8uej:JL (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875123 8uej:JM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875124 8uej:JQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875125 8uej:JR (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875126 8uej:JS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875127 8uej:JW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875128 8uej:KC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875129 8uej:KD (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875130 8uej:KE (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875131 8uej:KJ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875132 8uej:KK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875133 8uej:KO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875134 8uej:KQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875135 8uej:KV (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875136 8uej:LA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875137 8uej:LB (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875138 8uej:LB (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875139 8uej:LG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875140 8uej:LH (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875141 8uej:LI (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875142 8uej:LM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875143 8uej:LN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875144 8uej:LO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875145 8uej:LO (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875146 8uej:LS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875147 8uej:LU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875148 8uej:LY (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875149 8uej:LZ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875150 8uej:MA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875151 8uej:ME (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875152 8uej:MG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875153 8uej:MK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875154 8uej:ML (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875155 8uej:ML (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    875156 8uej:MM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875157 8uej:MR (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875158 8uej:MS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875159 8uej:NA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875160 8uej:NN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    875161 8uel:A (2.49) BS01 PEP 4.2.1.11 GO:0000015 ... O96656 38033172
    875162 8uel:A (2.49) BS02 MG 4.2.1.11 GO:0000015 ... O96656 38033172
    875163 8uel:A (2.49) BS03 MG 4.2.1.11 GO:0000015 ... O96656 38033172
    875164 8uel:B (2.49) BS01 PEP 4.2.1.11 GO:0000015 ... O96656 38033172
    875165 8uel:B (2.49) BS02 MG 4.2.1.11 GO:0000015 ... O96656 38033172
    875166 8ueo:1B (3.8) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875167 8ueo:1E (3.8) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875168 8ueo:1F (3.8) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875169 8ueo:1F (3.8) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875170 8ueo:1G (3.8) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875171 8ueo:1G (3.8) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875172 8ueo:1G (3.8) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875173 8ueo:1I (3.8) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875174 8ueo:1I (3.8) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875175 8ueo:1O (3.8) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875176 8ueo:1P (3.8) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875177 8ueo:1R (3.8) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875178 8ueo:1T (3.8) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875179 8ueo:1U (3.8) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875180 8ueo:1W (3.8) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875181 8ueo:1n (3.8) BS01 EHZ N/A N/A K7GSE5 38811722
    875182 8uep:1B (3.4) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875183 8uep:1B (3.4) BS02 U10 N/A GO:0046872 ... A0A4X1VVS8 38811722
    875184 8uep:1D (3.4) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    875185 8uep:1D (3.4) BS02 U10 N/A GO:0051539 ... A0A8D0QM68 38811722
    875186 8uep:1E (3.4) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    875187 8uep:1F (3.4) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    875188 8uep:1F (3.4) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    875189 8uep:1G (3.4) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875190 8uep:1G (3.4) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    875191 8uep:1G (3.4) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    875192 8uep:1H (3.4) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    875193 8uep:1I (3.4) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875194 8uep:1I (3.4) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    875195 8uep:1O (3.4) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    875196 8uep:1P (3.4) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    875197 8uep:1R (3.4) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    875198 8uep:1U (3.4) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    875199 8uep:1W (3.4) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    875200 8uep:1n (3.4) BS01 EHZ N/A N/A K7GSE5 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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