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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    874801 8ud8:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    874802 8ud8:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    874803 8ud8:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    874804 8ud8:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    874805 8ud8:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    874806 8ud8:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 38359125
    874807 8ud8:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 38359125
    874808 8ud8:1Q (2.6) BS03 rna ? GO:0000049 ... P60489 38359125
    874809 8ud8:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    874810 8ud8:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    874811 8ud8:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    874812 8ud8:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    874813 8ud8:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    874814 8ud8:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    874815 8ud8:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    874816 8ud8:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    874817 8ud8:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    874818 8ud8:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    874819 8ud8:1T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    874820 8ud8:1T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    874821 8ud8:1U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    874822 8ud8:1U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    874823 8ud8:1U (2.6) BS03 MG ? GO:0000027 ... P60491 38359125
    874824 8ud8:1U (2.6) BS04 MG ? GO:0000027 ... P60491 38359125
    874825 8ud8:1U (2.6) BS05 MG ? GO:0000027 ... P60491 38359125
    874826 8ud8:1U (2.6) BS06 MG ? GO:0000027 ... P60491 38359125
    874827 8ud8:1U (2.6) BS07 MG ? GO:0000027 ... P60491 38359125
    874828 8ud8:1U (2.6) BS08 MG ? GO:0000027 ... P60491 38359125
    874829 8ud8:1U (2.6) BS09 MG ? GO:0000027 ... P60491 38359125
    874830 8ud8:1U (2.6) BS10 MG ? GO:0000027 ... P60491 38359125
    874831 8ud8:1V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    874832 8ud8:1V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    874833 8ud8:1V (2.6) BS03 MG ? GO:0003723 ... P60492 38359125
    874834 8ud8:1V (2.6) BS04 MG ? GO:0003723 ... P60492 38359125
    874835 8ud8:1V (2.6) BS05 MG ? GO:0003723 ... P60492 38359125
    874836 8ud8:1V (2.6) BS06 MG ? GO:0003723 ... P60492 38359125
    874837 8ud8:1V (2.6) BS07 MG ? GO:0003723 ... P60492 38359125
    874838 8ud8:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    874839 8ud8:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    874840 8ud8:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    874841 8ud8:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    874842 8ud8:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    874843 8ud8:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    874844 8ud8:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    874845 8ud8:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    874846 8ud8:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    874847 8ud8:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    874848 8ud8:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    874849 8ud8:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    874850 8ud8:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    874851 8ud8:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    874852 8ud8:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    874853 8ud8:1b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    874854 8ud8:1c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    874855 8ud8:1d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    874856 8ud8:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 38359125
    874857 8ud8:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    874858 8ud8:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    874859 8ud8:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    874860 8ud8:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    874861 8ud8:1g (2.6) BS01 rna ? GO:0000028 ... P17291 38359125
    874862 8ud8:1g (2.6) BS02 rna ? GO:0000028 ... P17291 38359125
    874863 8ud8:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    874864 8ud8:1i (2.6) BS01 rna ? GO:0000049 ... P80374 38359125
    874865 8ud8:1i (2.6) BS02 rna ? GO:0000049 ... P80374 38359125
    874866 8ud8:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    874867 8ud8:1k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    874868 8ud8:1k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    874869 8ud8:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    874870 8ud8:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    874871 8ud8:1m (2.6) BS01 rna ? GO:0000049 ... P80377 38359125
    874872 8ud8:1m (2.6) BS02 rna ? GO:0000049 ... P80377 38359125
    874873 8ud8:1m (2.6) BS03 rna ? GO:0000049 ... P80377 38359125
    874874 8ud8:1m (2.6) BS04 MG ? GO:0000049 ... P80377 38359125
    874875 8ud8:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    874876 8ud8:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    874877 8ud8:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    874878 8ud8:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    874879 8ud8:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    874880 8ud8:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    874881 8ud8:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    874882 8ud8:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    874883 8ud8:1t (2.6) BS01 rna ? GO:0003723 ... P80380 38359125
    874884 8ud8:20 (2.6) BS01 rna ? GO:0003735 ... P60493 38359125
    874885 8ud8:20 (2.6) BS02 rna ? GO:0003735 ... P60493 38359125
    874886 8ud8:20 (2.6) BS03 rna ? GO:0003735 ... P60493 38359125
    874887 8ud8:21 (2.6) BS01 rna ? GO:0003735 ... P60494 38359125
    874888 8ud8:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    874889 8ud8:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    874890 8ud8:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    874891 8ud8:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    874892 8ud8:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    874893 8ud8:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    874894 8ud8:25 (2.6) BS01 rna ? GO:0003735 ... P80339 38359125
    874895 8ud8:25 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    874896 8ud8:25 (2.6) BS03 ZN ? GO:0003735 ... P80339 38359125
    874897 8ud8:26 (2.6) BS01 rna ? GO:0000049 ... P35871 38359125
    874898 8ud8:26 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    874899 8ud8:26 (2.6) BS03 ZN ? GO:0000049 ... P35871 38359125
    874900 8ud8:27 (2.6) BS01 rna ? GO:0003735 ... P80340 38359125
    874901 8ud8:27 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    874902 8ud8:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    874903 8ud8:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    874904 8ud8:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    874905 8ud8:2D (2.6) BS01 rna ? GO:0002181 ... P60405 38359125
    874906 8ud8:2D (2.6) BS02 rna ? GO:0002181 ... P60405 38359125
    874907 8ud8:2D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    874908 8ud8:2D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    874909 8ud8:2D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    874910 8ud8:2D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    874911 8ud8:2D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    874912 8ud8:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    874913 8ud8:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    874914 8ud8:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    874915 8ud8:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    874916 8ud8:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    874917 8ud8:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    874918 8ud8:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    874919 8ud8:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    874920 8ud8:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    874921 8ud8:2G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    874922 8ud8:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    874923 8ud8:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    874924 8ud8:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    874925 8ud8:2N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    874926 8ud8:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    874927 8ud8:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    874928 8ud8:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    874929 8ud8:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 38359125
    874930 8ud8:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 38359125
    874931 8ud8:2Q (2.6) BS03 rna ? GO:0000049 ... P60489 38359125
    874932 8ud8:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    874933 8ud8:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    874934 8ud8:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    874935 8ud8:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    874936 8ud8:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    874937 8ud8:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    874938 8ud8:2T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    874939 8ud8:2T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    874940 8ud8:2T (2.6) BS03 MG ? GO:0003735 ... P60490 38359125
    874941 8ud8:2U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    874942 8ud8:2U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    874943 8ud8:2V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    874944 8ud8:2V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    874945 8ud8:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    874946 8ud8:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    874947 8ud8:2X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    874948 8ud8:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    874949 8ud8:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    874950 8ud8:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    874951 8ud8:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    874952 8ud8:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    874953 8ud8:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 38359125
    874954 8ud8:2b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    874955 8ud8:2c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    874956 8ud8:2d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    874957 8ud8:2d (2.6) BS02 MG ? GO:0003723 ... P80373 38359125
    874958 8ud8:2d (2.6) BS03 SF4 ? GO:0003723 ... P80373 38359125
    874959 8ud8:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    874960 8ud8:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    874961 8ud8:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    874962 8ud8:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    874963 8ud8:2g (2.6) BS01 rna ? GO:0000028 ... P17291 38359125
    874964 8ud8:2g (2.6) BS02 rna ? GO:0000028 ... P17291 38359125
    874965 8ud8:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    874966 8ud8:2i (2.6) BS01 rna ? GO:0000049 ... P80374 38359125
    874967 8ud8:2i (2.6) BS02 rna ? GO:0000049 ... P80374 38359125
    874968 8ud8:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    874969 8ud8:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 38359125
    874970 8ud8:2k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    874971 8ud8:2k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    874972 8ud8:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    874973 8ud8:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    874974 8ud8:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    874975 8ud8:2m (2.6) BS01 rna ? GO:0000049 ... P80377 38359125
    874976 8ud8:2m (2.6) BS02 rna ? GO:0000049 ... P80377 38359125
    874977 8ud8:2m (2.6) BS03 rna ? GO:0000049 ... P80377 38359125
    874978 8ud8:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    874979 8ud8:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    874980 8ud8:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    874981 8ud8:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    874982 8ud8:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    874983 8ud8:2q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    874984 8ud8:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    874985 8ud8:2q (2.6) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    874986 8ud8:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    874987 8ud8:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    874988 8ud8:2t (2.6) BS01 rna ? GO:0003723 ... P80380 38359125
    874989 8ud8:2t (2.6) BS02 MG ? GO:0003723 ... P80380 38359125
    874990 8ud9:L (2.04) BS01 YRE 3.4.25.1 GO:0004298 ... P28074 38097652
    874991 8ud9:M (2.04) BS01 YRE 3.4.25.1 GO:0005839 ... P20618 38097652
    874992 8ud9:Z (2.04) BS01 YRE 3.4.25.1 GO:0004298 ... P28074 38097652
    874993 8ud9:a (2.04) BS01 YRE 3.4.25.1 GO:0005839 ... P20618 38097652
    874994 8udc:A (3.1) BS01 WCK 2.7.11.1 GO:0004672 ... D6WMX4 N/A
    874995 8udk:A (3.43) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    874996 8udk:A (3.43) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    874997 8udk:A (3.43) BS03 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    874998 8udk:B (3.43) BS01 dna 2.7.7.7 GO:0001701 ... Q9UHN1 38787958
    874999 8udl:A (2.37) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    875000 8udl:A (2.37) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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