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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    874601 8ud7:1h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    874602 8ud7:1i (2.55) BS01 rna ? GO:0000049 ... P80374 38359125
    874603 8ud7:1i (2.55) BS02 rna ? GO:0000049 ... P80374 38359125
    874604 8ud7:1j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    874605 8ud7:1k (2.55) BS01 rna ? GO:0003735 ... P80376 38359125
    874606 8ud7:1k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    874607 8ud7:1l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    874608 8ud7:1l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    874609 8ud7:1m (2.55) BS01 rna ? GO:0000049 ... P80377 38359125
    874610 8ud7:1m (2.55) BS02 rna ? GO:0000049 ... P80377 38359125
    874611 8ud7:1m (2.55) BS03 rna ? GO:0000049 ... P80377 38359125
    874612 8ud7:1m (2.55) BS04 MG ? GO:0000049 ... P80377 38359125
    874613 8ud7:1n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    874614 8ud7:1n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    874615 8ud7:1o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    874616 8ud7:1o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    874617 8ud7:1p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    874618 8ud7:1q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    874619 8ud7:1r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    874620 8ud7:1s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    874621 8ud7:1t (2.55) BS01 rna ? GO:0003723 ... P80380 38359125
    874622 8ud7:1t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    874623 8ud7:20 (2.55) BS01 rna ? GO:0003735 ... P60493 38359125
    874624 8ud7:20 (2.55) BS02 rna ? GO:0003735 ... P60493 38359125
    874625 8ud7:20 (2.55) BS03 rna ? GO:0003735 ... P60493 38359125
    874626 8ud7:21 (2.55) BS01 rna ? GO:0003735 ... P60494 38359125
    874627 8ud7:22 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    874628 8ud7:23 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    874629 8ud7:23 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    874630 8ud7:24 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    874631 8ud7:24 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    874632 8ud7:25 (2.55) BS01 rna ? GO:0003735 ... P80339 38359125
    874633 8ud7:25 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    874634 8ud7:25 (2.55) BS03 ZN ? GO:0003735 ... P80339 38359125
    874635 8ud7:26 (2.55) BS01 rna ? GO:0000049 ... P35871 38359125
    874636 8ud7:26 (2.55) BS02 ZN ? GO:0000049 ... P35871 38359125
    874637 8ud7:27 (2.55) BS01 rna ? GO:0003735 ... P80340 38359125
    874638 8ud7:27 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    874639 8ud7:27 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    874640 8ud7:28 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    874641 8ud7:29 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    874642 8ud7:29 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    874643 8ud7:2D (2.55) BS01 rna ? GO:0002181 ... P60405 38359125
    874644 8ud7:2D (2.55) BS02 rna ? GO:0002181 ... P60405 38359125
    874645 8ud7:2D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    874646 8ud7:2D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    874647 8ud7:2D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    874648 8ud7:2D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    874649 8ud7:2D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    874650 8ud7:2E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    874651 8ud7:2F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    874652 8ud7:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    874653 8ud7:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    874654 8ud7:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    874655 8ud7:2G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    874656 8ud7:2G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    874657 8ud7:2G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    874658 8ud7:2G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    874659 8ud7:2H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    874660 8ud7:2I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    874661 8ud7:2N (2.55) BS01 rna ? GO:0003729 ... P60488 38359125
    874662 8ud7:2O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    874663 8ud7:2O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    874664 8ud7:2P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    874665 8ud7:2Q (2.55) BS01 rna ? GO:0000049 ... P60489 38359125
    874666 8ud7:2Q (2.55) BS02 rna ? GO:0000049 ... P60489 38359125
    874667 8ud7:2Q (2.55) BS03 rna ? GO:0000049 ... P60489 38359125
    874668 8ud7:2Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    874669 8ud7:2Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    874670 8ud7:2Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    874671 8ud7:2R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    874672 8ud7:2S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    874673 8ud7:2S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    874674 8ud7:2T (2.55) BS01 rna ? GO:0003735 ... P60490 38359125
    874675 8ud7:2T (2.55) BS02 rna ? GO:0003735 ... P60490 38359125
    874676 8ud7:2U (2.55) BS01 rna ? GO:0000027 ... P60491 38359125
    874677 8ud7:2U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    874678 8ud7:2V (2.55) BS01 rna ? GO:0003723 ... P60492 38359125
    874679 8ud7:2V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    874680 8ud7:2W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    874681 8ud7:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    874682 8ud7:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    874683 8ud7:2X (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    874684 8ud7:2X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    874685 8ud7:2Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    874686 8ud7:2Y (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    874687 8ud7:2Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    874688 8ud7:2Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    874689 8ud7:2b (2.55) BS01 rna ? GO:0003735 ... P80371 38359125
    874690 8ud7:2c (2.55) BS01 rna ? GO:0003676 ... P80372 38359125
    874691 8ud7:2d (2.55) BS01 rna ? GO:0003723 ... P80373 38359125
    874692 8ud7:2d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38359125
    874693 8ud7:2e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    874694 8ud7:2e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    874695 8ud7:2f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    874696 8ud7:2f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    874697 8ud7:2g (2.55) BS01 rna ? GO:0000028 ... P17291 38359125
    874698 8ud7:2g (2.55) BS02 rna ? GO:0000028 ... P17291 38359125
    874699 8ud7:2h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    874700 8ud7:2i (2.55) BS01 rna ? GO:0000049 ... P80374 38359125
    874701 8ud7:2i (2.55) BS02 rna ? GO:0000049 ... P80374 38359125
    874702 8ud7:2j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    874703 8ud7:2k (2.55) BS01 rna ? GO:0003735 ... P80376 38359125
    874704 8ud7:2k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    874705 8ud7:2l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    874706 8ud7:2l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    874707 8ud7:2l (2.55) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    874708 8ud7:2l (2.55) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    874709 8ud7:2m (2.55) BS01 rna ? GO:0000049 ... P80377 38359125
    874710 8ud7:2m (2.55) BS02 rna ? GO:0000049 ... P80377 38359125
    874711 8ud7:2m (2.55) BS03 rna ? GO:0000049 ... P80377 38359125
    874712 8ud7:2n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    874713 8ud7:2n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    874714 8ud7:2o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    874715 8ud7:2o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    874716 8ud7:2p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    874717 8ud7:2q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    874718 8ud7:2q (2.55) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    874719 8ud7:2r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    874720 8ud7:2s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    874721 8ud7:2t (2.55) BS01 rna ? GO:0003723 ... P80380 38359125
    874722 8ud7:2t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    874723 8ud8:10 (2.6) BS01 rna ? GO:0003735 ... P60493 38359125
    874724 8ud8:10 (2.6) BS02 rna ? GO:0003735 ... P60493 38359125
    874725 8ud8:10 (2.6) BS03 rna ? GO:0003735 ... P60493 38359125
    874726 8ud8:10 (2.6) BS04 MG ? GO:0003735 ... P60493 38359125
    874727 8ud8:10 (2.6) BS05 MG ? GO:0003735 ... P60493 38359125
    874728 8ud8:11 (2.6) BS01 rna ? GO:0003735 ... P60494 38359125
    874729 8ud8:11 (2.6) BS02 rna ? GO:0003735 ... P60494 38359125
    874730 8ud8:11 (2.6) BS03 MG ? GO:0003735 ... P60494 38359125
    874731 8ud8:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    874732 8ud8:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    874733 8ud8:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    874734 8ud8:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    874735 8ud8:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    874736 8ud8:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    874737 8ud8:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    874738 8ud8:15 (2.6) BS01 rna ? GO:0003735 ... P80339 38359125
    874739 8ud8:15 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    874740 8ud8:15 (2.6) BS03 MG ? GO:0003735 ... P80339 38359125
    874741 8ud8:15 (2.6) BS04 MG ? GO:0003735 ... P80339 38359125
    874742 8ud8:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 38359125
    874743 8ud8:16 (2.6) BS01 rna ? GO:0000049 ... P35871 38359125
    874744 8ud8:16 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    874745 8ud8:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 38359125
    874746 8ud8:17 (2.6) BS01 rna ? GO:0003735 ... P80340 38359125
    874747 8ud8:17 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    874748 8ud8:17 (2.6) BS03 MG ? GO:0003735 ... P80340 38359125
    874749 8ud8:17 (2.6) BS04 MG ? GO:0003735 ... P80340 38359125
    874750 8ud8:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    874751 8ud8:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    874752 8ud8:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    874753 8ud8:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    874754 8ud8:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    874755 8ud8:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    874756 8ud8:1D (2.6) BS01 rna ? GO:0002181 ... P60405 38359125
    874757 8ud8:1D (2.6) BS02 rna ? GO:0002181 ... P60405 38359125
    874758 8ud8:1D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    874759 8ud8:1D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    874760 8ud8:1D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    874761 8ud8:1D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    874762 8ud8:1D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    874763 8ud8:1D (2.6) BS08 MG ? GO:0002181 ... P60405 38359125
    874764 8ud8:1D (2.6) BS09 MG ? GO:0002181 ... P60405 38359125
    874765 8ud8:1D (2.6) BS10 MG ? GO:0002181 ... P60405 38359125
    874766 8ud8:1D (2.6) BS11 MG ? GO:0002181 ... P60405 38359125
    874767 8ud8:1D (2.6) BS12 MG ? GO:0002181 ... P60405 38359125
    874768 8ud8:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    874769 8ud8:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    874770 8ud8:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    874771 8ud8:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    874772 8ud8:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    874773 8ud8:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    874774 8ud8:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    874775 8ud8:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    874776 8ud8:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    874777 8ud8:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    874778 8ud8:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    874779 8ud8:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    874780 8ud8:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    874781 8ud8:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    874782 8ud8:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    874783 8ud8:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    874784 8ud8:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    874785 8ud8:1G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    874786 8ud8:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    874787 8ud8:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 38359125
    874788 8ud8:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    874789 8ud8:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    874790 8ud8:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    874791 8ud8:1N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    874792 8ud8:1N (2.6) BS02 MG ? GO:0003729 ... P60488 38359125
    874793 8ud8:1N (2.6) BS03 MG ? GO:0003729 ... P60488 38359125
    874794 8ud8:1N (2.6) BS04 MG ? GO:0003729 ... P60488 38359125
    874795 8ud8:1N (2.6) BS05 MG ? GO:0003729 ... P60488 38359125
    874796 8ud8:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    874797 8ud8:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    874798 8ud8:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    874799 8ud8:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    874800 8ud8:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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