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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    874401 8ud6:2N (2.7) BS01 rna ? GO:0003729 ... P60488 38359125
    874402 8ud6:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    874403 8ud6:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    874404 8ud6:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    874405 8ud6:2Q (2.7) BS01 rna ? GO:0000049 ... P60489 38359125
    874406 8ud6:2Q (2.7) BS02 rna ? GO:0000049 ... P60489 38359125
    874407 8ud6:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 38359125
    874408 8ud6:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    874409 8ud6:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    874410 8ud6:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    874411 8ud6:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    874412 8ud6:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    874413 8ud6:2T (2.7) BS01 rna ? GO:0003735 ... P60490 38359125
    874414 8ud6:2T (2.7) BS02 rna ? GO:0003735 ... P60490 38359125
    874415 8ud6:2U (2.7) BS01 rna ? GO:0000027 ... P60491 38359125
    874416 8ud6:2U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    874417 8ud6:2V (2.7) BS01 rna ? GO:0003723 ... P60492 38359125
    874418 8ud6:2V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    874419 8ud6:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    874420 8ud6:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    874421 8ud6:2X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    874422 8ud6:2X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    874423 8ud6:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    874424 8ud6:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    874425 8ud6:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    874426 8ud6:2Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    874427 8ud6:2b (2.7) BS01 rna ? GO:0003735 ... P80371 38359125
    874428 8ud6:2c (2.7) BS01 rna ? GO:0003676 ... P80372 38359125
    874429 8ud6:2d (2.7) BS01 rna ? GO:0003723 ... P80373 38359125
    874430 8ud6:2d (2.7) BS02 MG ? GO:0003723 ... P80373 38359125
    874431 8ud6:2d (2.7) BS03 SF4 ? GO:0003723 ... P80373 38359125
    874432 8ud6:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    874433 8ud6:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    874434 8ud6:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    874435 8ud6:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    874436 8ud6:2g (2.7) BS01 rna ? GO:0000028 ... P17291 38359125
    874437 8ud6:2g (2.7) BS02 rna ? GO:0000028 ... P17291 38359125
    874438 8ud6:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    874439 8ud6:2i (2.7) BS01 rna ? GO:0000049 ... P80374 38359125
    874440 8ud6:2i (2.7) BS02 rna ? GO:0000049 ... P80374 38359125
    874441 8ud6:2j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    874442 8ud6:2k (2.7) BS01 rna ? GO:0003735 ... P80376 38359125
    874443 8ud6:2k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    874444 8ud6:2l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    874445 8ud6:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    874446 8ud6:2l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    874447 8ud6:2l (2.7) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    874448 8ud6:2m (2.7) BS01 rna ? GO:0000049 ... P80377 38359125
    874449 8ud6:2m (2.7) BS02 rna ? GO:0000049 ... P80377 38359125
    874450 8ud6:2n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    874451 8ud6:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    874452 8ud6:2o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    874453 8ud6:2o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    874454 8ud6:2p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    874455 8ud6:2q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    874456 8ud6:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    874457 8ud6:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    874458 8ud6:2r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    874459 8ud6:2s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    874460 8ud6:2t (2.7) BS01 rna ? GO:0003723 ... P80380 38359125
    874461 8ud7:10 (2.55) BS01 rna ? GO:0003735 ... P60493 38359125
    874462 8ud7:10 (2.55) BS02 rna ? GO:0003735 ... P60493 38359125
    874463 8ud7:10 (2.55) BS03 MG ? GO:0003735 ... P60493 38359125
    874464 8ud7:10 (2.55) BS04 MG ? GO:0003735 ... P60493 38359125
    874465 8ud7:11 (2.55) BS01 rna ? GO:0003735 ... P60494 38359125
    874466 8ud7:11 (2.55) BS02 MG ? GO:0003735 ... P60494 38359125
    874467 8ud7:12 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    874468 8ud7:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    874469 8ud7:13 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    874470 8ud7:13 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    874471 8ud7:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    874472 8ud7:14 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    874473 8ud7:14 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    874474 8ud7:15 (2.55) BS01 rna ? GO:0003735 ... P80339 38359125
    874475 8ud7:15 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    874476 8ud7:15 (2.55) BS03 MG ? GO:0003735 ... P80339 38359125
    874477 8ud7:15 (2.55) BS04 ZN ? GO:0003735 ... P80339 38359125
    874478 8ud7:16 (2.55) BS01 rna ? GO:0000049 ... P35871 38359125
    874479 8ud7:16 (2.55) BS02 MG ? GO:0000049 ... P35871 38359125
    874480 8ud7:16 (2.55) BS03 ZN ? GO:0000049 ... P35871 38359125
    874481 8ud7:17 (2.55) BS01 rna ? GO:0003735 ... P80340 38359125
    874482 8ud7:17 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    874483 8ud7:17 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    874484 8ud7:18 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    874485 8ud7:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    874486 8ud7:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    874487 8ud7:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    874488 8ud7:19 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    874489 8ud7:19 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    874490 8ud7:1D (2.55) BS01 rna ? GO:0002181 ... P60405 38359125
    874491 8ud7:1D (2.55) BS02 rna ? GO:0002181 ... P60405 38359125
    874492 8ud7:1D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    874493 8ud7:1D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    874494 8ud7:1D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    874495 8ud7:1D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    874496 8ud7:1D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    874497 8ud7:1D (2.55) BS08 MG ? GO:0002181 ... P60405 38359125
    874498 8ud7:1D (2.55) BS09 MG ? GO:0002181 ... P60405 38359125
    874499 8ud7:1D (2.55) BS10 MG ? GO:0002181 ... P60405 38359125
    874500 8ud7:1D (2.55) BS11 MG ? GO:0002181 ... P60405 38359125
    874501 8ud7:1D (2.55) BS12 MG ? GO:0002181 ... P60405 38359125
    874502 8ud7:1E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    874503 8ud7:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    874504 8ud7:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    874505 8ud7:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    874506 8ud7:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    874507 8ud7:1E (2.55) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    874508 8ud7:1F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    874509 8ud7:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    874510 8ud7:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    874511 8ud7:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    874512 8ud7:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    874513 8ud7:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    874514 8ud7:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    874515 8ud7:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    874516 8ud7:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    874517 8ud7:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 38359125
    874518 8ud7:1F (2.55) BS11 MG ? GO:0003735 ... Q5SHN9 38359125
    874519 8ud7:1F (2.55) BS12 MG ? GO:0003735 ... Q5SHN9 38359125
    874520 8ud7:1G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    874521 8ud7:1G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    874522 8ud7:1G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    874523 8ud7:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    874524 8ud7:1H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    874525 8ud7:1I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    874526 8ud7:1I (2.55) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    874527 8ud7:1N (2.55) BS01 rna ? GO:0003729 ... P60488 38359125
    874528 8ud7:1N (2.55) BS02 MG ? GO:0003729 ... P60488 38359125
    874529 8ud7:1N (2.55) BS03 MG ? GO:0003729 ... P60488 38359125
    874530 8ud7:1O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    874531 8ud7:1O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    874532 8ud7:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    874533 8ud7:1O (2.55) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    874534 8ud7:1P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    874535 8ud7:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    874536 8ud7:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    874537 8ud7:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    874538 8ud7:1P (2.55) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    874539 8ud7:1P (2.55) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    874540 8ud7:1Q (2.55) BS01 rna ? GO:0000049 ... P60489 38359125
    874541 8ud7:1Q (2.55) BS02 rna ? GO:0000049 ... P60489 38359125
    874542 8ud7:1Q (2.55) BS03 rna ? GO:0000049 ... P60489 38359125
    874543 8ud7:1Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    874544 8ud7:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    874545 8ud7:1Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    874546 8ud7:1Q (2.55) BS07 MG ? GO:0000049 ... P60489 38359125
    874547 8ud7:1Q (2.55) BS08 MG ? GO:0000049 ... P60489 38359125
    874548 8ud7:1R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    874549 8ud7:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    874550 8ud7:1R (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    874551 8ud7:1S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    874552 8ud7:1S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    874553 8ud7:1S (2.55) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    874554 8ud7:1S (2.55) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    874555 8ud7:1T (2.55) BS01 rna ? GO:0003735 ... P60490 38359125
    874556 8ud7:1T (2.55) BS02 rna ? GO:0003735 ... P60490 38359125
    874557 8ud7:1U (2.55) BS01 rna ? GO:0000027 ... P60491 38359125
    874558 8ud7:1U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    874559 8ud7:1U (2.55) BS03 MG ? GO:0000027 ... P60491 38359125
    874560 8ud7:1U (2.55) BS04 MG ? GO:0000027 ... P60491 38359125
    874561 8ud7:1U (2.55) BS05 MG ? GO:0000027 ... P60491 38359125
    874562 8ud7:1U (2.55) BS06 MG ? GO:0000027 ... P60491 38359125
    874563 8ud7:1U (2.55) BS07 MG ? GO:0000027 ... P60491 38359125
    874564 8ud7:1U (2.55) BS08 MG ? GO:0000027 ... P60491 38359125
    874565 8ud7:1U (2.55) BS09 MG ? GO:0000027 ... P60491 38359125
    874566 8ud7:1U (2.55) BS10 MG ? GO:0000027 ... P60491 38359125
    874567 8ud7:1U (2.55) BS11 MG ? GO:0000027 ... P60491 38359125
    874568 8ud7:1V (2.55) BS01 rna ? GO:0003723 ... P60492 38359125
    874569 8ud7:1V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    874570 8ud7:1V (2.55) BS03 MG ? GO:0003723 ... P60492 38359125
    874571 8ud7:1V (2.55) BS04 MG ? GO:0003723 ... P60492 38359125
    874572 8ud7:1V (2.55) BS05 MG ? GO:0003723 ... P60492 38359125
    874573 8ud7:1V (2.55) BS06 MG ? GO:0003723 ... P60492 38359125
    874574 8ud7:1V (2.55) BS07 MG ? GO:0003723 ... P60492 38359125
    874575 8ud7:1W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    874576 8ud7:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    874577 8ud7:1W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    874578 8ud7:1W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    874579 8ud7:1W (2.55) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    874580 8ud7:1W (2.55) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    874581 8ud7:1X (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    874582 8ud7:1X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    874583 8ud7:1X (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    874584 8ud7:1X (2.55) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    874585 8ud7:1X (2.55) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    874586 8ud7:1X (2.55) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    874587 8ud7:1Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    874588 8ud7:1Y (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    874589 8ud7:1Y (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    874590 8ud7:1Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    874591 8ud7:1Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    874592 8ud7:1b (2.55) BS01 rna ? GO:0003735 ... P80371 38359125
    874593 8ud7:1c (2.55) BS01 rna ? GO:0003676 ... P80372 38359125
    874594 8ud7:1d (2.55) BS01 rna ? GO:0003723 ... P80373 38359125
    874595 8ud7:1d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38359125
    874596 8ud7:1e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    874597 8ud7:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    874598 8ud7:1f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    874599 8ud7:1g (2.55) BS01 rna ? GO:0000028 ... P17291 38359125
    874600 8ud7:1g (2.55) BS02 rna ? GO:0000028 ... P17291 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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