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Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    874201 8ud3:A (2.67) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874202 8ud3:A (2.67) BS02 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874203 8ud3:B (2.67) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874204 8ud4:A (3.25) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874205 8ud4:A (3.25) BS02 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874206 8ud4:B (3.25) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874207 8ud5:A (3.13) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874208 8ud5:A (3.13) BS02 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874209 8ud5:B (3.13) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874210 8ud5:D (3.13) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 38613382
    874211 8ud6:10 (2.7) BS01 rna ? GO:0003735 ... P60493 38359125
    874212 8ud6:10 (2.7) BS02 rna ? GO:0003735 ... P60493 38359125
    874213 8ud6:10 (2.7) BS03 MG ? GO:0003735 ... P60493 38359125
    874214 8ud6:10 (2.7) BS04 MG ? GO:0003735 ... P60493 38359125
    874215 8ud6:10 (2.7) BS05 MG ? GO:0003735 ... P60493 38359125
    874216 8ud6:11 (2.7) BS01 rna ? GO:0003735 ... P60494 38359125
    874217 8ud6:11 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    874218 8ud6:12 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    874219 8ud6:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    874220 8ud6:13 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    874221 8ud6:13 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    874222 8ud6:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    874223 8ud6:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38359125
    874224 8ud6:14 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    874225 8ud6:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    874226 8ud6:15 (2.7) BS01 rna ? GO:0003735 ... P80339 38359125
    874227 8ud6:15 (2.7) BS02 MG ? GO:0003735 ... P80339 38359125
    874228 8ud6:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 38359125
    874229 8ud6:16 (2.7) BS01 rna ? GO:0000049 ... P35871 38359125
    874230 8ud6:16 (2.7) BS02 MG ? GO:0000049 ... P35871 38359125
    874231 8ud6:16 (2.7) BS03 ZN ? GO:0000049 ... P35871 38359125
    874232 8ud6:17 (2.7) BS01 rna ? GO:0003735 ... P80340 38359125
    874233 8ud6:17 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    874234 8ud6:17 (2.7) BS03 MG ? GO:0003735 ... P80340 38359125
    874235 8ud6:18 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    874236 8ud6:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    874237 8ud6:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    874238 8ud6:19 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    874239 8ud6:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    874240 8ud6:1D (2.7) BS01 rna ? GO:0002181 ... P60405 38359125
    874241 8ud6:1D (2.7) BS02 rna ? GO:0002181 ... P60405 38359125
    874242 8ud6:1D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    874243 8ud6:1D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    874244 8ud6:1D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    874245 8ud6:1D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    874246 8ud6:1D (2.7) BS07 MG ? GO:0002181 ... P60405 38359125
    874247 8ud6:1D (2.7) BS08 MG ? GO:0002181 ... P60405 38359125
    874248 8ud6:1D (2.7) BS09 MG ? GO:0002181 ... P60405 38359125
    874249 8ud6:1D (2.7) BS10 MG ? GO:0002181 ... P60405 38359125
    874250 8ud6:1D (2.7) BS11 MG ? GO:0002181 ... P60405 38359125
    874251 8ud6:1D (2.7) BS12 MG ? GO:0002181 ... P60405 38359125
    874252 8ud6:1D (2.7) BS13 MG ? GO:0002181 ... P60405 38359125
    874253 8ud6:1E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    874254 8ud6:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    874255 8ud6:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    874256 8ud6:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    874257 8ud6:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    874258 8ud6:1F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    874259 8ud6:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    874260 8ud6:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    874261 8ud6:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    874262 8ud6:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    874263 8ud6:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    874264 8ud6:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    874265 8ud6:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    874266 8ud6:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    874267 8ud6:1G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    874268 8ud6:1G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    874269 8ud6:1G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 38359125
    874270 8ud6:1H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    874271 8ud6:1I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    874272 8ud6:1N (2.7) BS01 rna ? GO:0003729 ... P60488 38359125
    874273 8ud6:1N (2.7) BS02 MG ? GO:0003729 ... P60488 38359125
    874274 8ud6:1O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    874275 8ud6:1O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    874276 8ud6:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    874277 8ud6:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    874278 8ud6:1P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    874279 8ud6:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    874280 8ud6:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    874281 8ud6:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    874282 8ud6:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    874283 8ud6:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    874284 8ud6:1Q (2.7) BS01 rna ? GO:0000049 ... P60489 38359125
    874285 8ud6:1Q (2.7) BS02 rna ? GO:0000049 ... P60489 38359125
    874286 8ud6:1Q (2.7) BS03 rna ? GO:0000049 ... P60489 38359125
    874287 8ud6:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    874288 8ud6:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    874289 8ud6:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 38359125
    874290 8ud6:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 38359125
    874291 8ud6:1R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    874292 8ud6:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    874293 8ud6:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    874294 8ud6:1S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    874295 8ud6:1S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    874296 8ud6:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    874297 8ud6:1T (2.7) BS01 rna ? GO:0003735 ... P60490 38359125
    874298 8ud6:1T (2.7) BS02 rna ? GO:0003735 ... P60490 38359125
    874299 8ud6:1T (2.7) BS03 MG ? GO:0003735 ... P60490 38359125
    874300 8ud6:1U (2.7) BS01 rna ? GO:0000027 ... P60491 38359125
    874301 8ud6:1U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    874302 8ud6:1U (2.7) BS03 MG ? GO:0000027 ... P60491 38359125
    874303 8ud6:1U (2.7) BS04 MG ? GO:0000027 ... P60491 38359125
    874304 8ud6:1U (2.7) BS05 MG ? GO:0000027 ... P60491 38359125
    874305 8ud6:1U (2.7) BS06 MG ? GO:0000027 ... P60491 38359125
    874306 8ud6:1U (2.7) BS07 MG ? GO:0000027 ... P60491 38359125
    874307 8ud6:1U (2.7) BS08 MG ? GO:0000027 ... P60491 38359125
    874308 8ud6:1U (2.7) BS09 MG ? GO:0000027 ... P60491 38359125
    874309 8ud6:1U (2.7) BS10 MG ? GO:0000027 ... P60491 38359125
    874310 8ud6:1V (2.7) BS01 rna ? GO:0003723 ... P60492 38359125
    874311 8ud6:1V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    874312 8ud6:1V (2.7) BS03 MG ? GO:0003723 ... P60492 38359125
    874313 8ud6:1V (2.7) BS04 MG ? GO:0003723 ... P60492 38359125
    874314 8ud6:1V (2.7) BS05 MG ? GO:0003723 ... P60492 38359125
    874315 8ud6:1V (2.7) BS06 MG ? GO:0003723 ... P60492 38359125
    874316 8ud6:1V (2.7) BS07 MG ? GO:0003723 ... P60492 38359125
    874317 8ud6:1W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    874318 8ud6:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    874319 8ud6:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    874320 8ud6:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    874321 8ud6:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    874322 8ud6:1X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    874323 8ud6:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    874324 8ud6:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    874325 8ud6:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    874326 8ud6:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    874327 8ud6:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    874328 8ud6:1Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    874329 8ud6:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    874330 8ud6:1Y (2.7) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    874331 8ud6:1Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    874332 8ud6:1Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    874333 8ud6:1b (2.7) BS01 rna ? GO:0003735 ... P80371 38359125
    874334 8ud6:1c (2.7) BS01 rna ? GO:0003676 ... P80372 38359125
    874335 8ud6:1d (2.7) BS01 rna ? GO:0003723 ... P80373 38359125
    874336 8ud6:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 38359125
    874337 8ud6:1e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    874338 8ud6:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    874339 8ud6:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 38359125
    874340 8ud6:1f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    874341 8ud6:1g (2.7) BS01 rna ? GO:0000028 ... P17291 38359125
    874342 8ud6:1g (2.7) BS02 rna ? GO:0000028 ... P17291 38359125
    874343 8ud6:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    874344 8ud6:1i (2.7) BS01 rna ? GO:0000049 ... P80374 38359125
    874345 8ud6:1i (2.7) BS02 rna ? GO:0000049 ... P80374 38359125
    874346 8ud6:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    874347 8ud6:1k (2.7) BS01 rna ? GO:0003735 ... P80376 38359125
    874348 8ud6:1k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    874349 8ud6:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    874350 8ud6:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    874351 8ud6:1m (2.7) BS01 rna ? GO:0000049 ... P80377 38359125
    874352 8ud6:1m (2.7) BS02 rna ? GO:0000049 ... P80377 38359125
    874353 8ud6:1m (2.7) BS03 rna ? GO:0000049 ... P80377 38359125
    874354 8ud6:1m (2.7) BS04 MG ? GO:0000049 ... P80377 38359125
    874355 8ud6:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    874356 8ud6:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    874357 8ud6:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    874358 8ud6:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    874359 8ud6:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    874360 8ud6:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    874361 8ud6:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    874362 8ud6:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    874363 8ud6:1t (2.7) BS01 rna ? GO:0003723 ... P80380 38359125
    874364 8ud6:1t (2.7) BS02 MG ? GO:0003723 ... P80380 38359125
    874365 8ud6:20 (2.7) BS01 rna ? GO:0003735 ... P60493 38359125
    874366 8ud6:20 (2.7) BS02 rna ? GO:0003735 ... P60493 38359125
    874367 8ud6:20 (2.7) BS03 rna ? GO:0003735 ... P60493 38359125
    874368 8ud6:21 (2.7) BS01 rna ? GO:0003735 ... P60494 38359125
    874369 8ud6:21 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    874370 8ud6:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    874371 8ud6:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    874372 8ud6:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    874373 8ud6:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    874374 8ud6:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    874375 8ud6:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    874376 8ud6:25 (2.7) BS01 rna ? GO:0003735 ... P80339 38359125
    874377 8ud6:25 (2.7) BS02 ZN ? GO:0003735 ... P80339 38359125
    874378 8ud6:26 (2.7) BS01 rna ? GO:0000049 ... P35871 38359125
    874379 8ud6:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 38359125
    874380 8ud6:27 (2.7) BS01 rna ? GO:0003735 ... P80340 38359125
    874381 8ud6:27 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    874382 8ud6:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    874383 8ud6:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    874384 8ud6:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    874385 8ud6:2D (2.7) BS01 rna ? GO:0002181 ... P60405 38359125
    874386 8ud6:2D (2.7) BS02 rna ? GO:0002181 ... P60405 38359125
    874387 8ud6:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    874388 8ud6:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    874389 8ud6:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    874390 8ud6:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    874391 8ud6:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    874392 8ud6:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    874393 8ud6:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    874394 8ud6:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    874395 8ud6:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    874396 8ud6:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    874397 8ud6:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    874398 8ud6:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    874399 8ud6:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    874400 8ud6:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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