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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    874001 8uaf:Q (3.18) BS01 ADP N/A N/A N/A 38096827
    874002 8uaj:A (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874003 8uaj:B (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874004 8uaj:C (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874005 8uaj:D (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874006 8uak:A (2.82) BS01 W39 2.7.11.13 GO:0004672 ... P17252 38198520
    874007 8uan:A (1.99) BS01 CO N/A GO:0005506 ... Q96SZ5 38941563
    874008 8uap:A (2.5) BS01 W2T 2.7.11.16 GO:0004672 ... P34947 38016297
    874009 8uaq:A (2.8) BS01 W3F 2.7.11.16 GO:0004672 ... P34947 38016297
    874010 8uar:A (2.99) BS01 ZN N/A N/A N/A N/A
    874011 8uar:A (2.99) BS02 ZN N/A N/A N/A N/A
    874012 8uar:A (2.99) BS03 W46 N/A N/A N/A N/A
    874013 8uar:B (2.99) BS01 ZN N/A N/A N/A N/A
    874014 8uar:B (2.99) BS02 ZN N/A N/A N/A N/A
    874015 8uar:B (2.99) BS03 W46 N/A N/A N/A N/A
    874016 8uar:C (2.99) BS01 ZN N/A N/A N/A N/A
    874017 8uar:C (2.99) BS02 ZN N/A N/A N/A N/A
    874018 8uar:C (2.99) BS03 W46 N/A N/A N/A N/A
    874019 8uar:D (2.99) BS01 ZN N/A N/A N/A N/A
    874020 8uar:D (2.99) BS02 ZN N/A N/A N/A N/A
    874021 8uar:D (2.99) BS03 W46 N/A N/A N/A N/A
    874022 8uar:E (2.99) BS01 ZN N/A N/A N/A N/A
    874023 8uar:E (2.99) BS02 ZN N/A N/A N/A N/A
    874024 8uar:E (2.99) BS03 W46 N/A N/A N/A N/A
    874025 8uar:F (2.99) BS01 ZN N/A N/A N/A N/A
    874026 8uar:F (2.99) BS02 ZN N/A N/A N/A N/A
    874027 8uar:F (2.99) BS03 W46 N/A N/A N/A N/A
    874028 8uar:G (2.99) BS01 ZN N/A N/A N/A N/A
    874029 8uar:G (2.99) BS02 ZN N/A N/A N/A N/A
    874030 8uar:H (2.99) BS01 ZN N/A N/A N/A N/A
    874031 8uar:H (2.99) BS02 ZN N/A N/A N/A N/A
    874032 8uar:H (2.99) BS03 W46 N/A N/A N/A N/A
    874033 8uar:I (2.99) BS01 ZN N/A N/A N/A N/A
    874034 8uar:I (2.99) BS02 ZN N/A N/A N/A N/A
    874035 8uar:I (2.99) BS03 W46 N/A N/A N/A N/A
    874036 8uar:J (2.99) BS01 ZN N/A N/A N/A N/A
    874037 8uar:J (2.99) BS02 ZN N/A N/A N/A N/A
    874038 8uar:J (2.99) BS03 W46 N/A N/A N/A N/A
    874039 8uar:K (2.99) BS01 ZN N/A N/A N/A N/A
    874040 8uar:K (2.99) BS02 ZN N/A N/A N/A N/A
    874041 8uar:K (2.99) BS03 W46 N/A N/A N/A N/A
    874042 8uar:L (2.99) BS01 ZN N/A N/A N/A N/A
    874043 8uar:L (2.99) BS02 ZN N/A N/A N/A N/A
    874044 8uar:L (2.99) BS03 W46 N/A N/A N/A N/A
    874045 8uas:A (2.2) BS01 ZN N/A N/A N/A N/A
    874046 8uas:A (2.2) BS02 ZN N/A N/A N/A N/A
    874047 8uas:B (2.2) BS01 ZN N/A N/A N/A N/A
    874048 8uas:B (2.2) BS02 ZN N/A N/A N/A N/A
    874049 8uas:C (2.2) BS01 ZN N/A N/A N/A N/A
    874050 8uas:C (2.2) BS02 ZN N/A N/A N/A N/A
    874051 8uas:C (2.2) BS03 W3O N/A N/A N/A N/A
    874052 8uas:D (2.2) BS01 ZN N/A N/A N/A N/A
    874053 8uas:D (2.2) BS02 ZN N/A N/A N/A N/A
    874054 8uas:D (2.2) BS03 W3O N/A N/A N/A N/A
    874055 8uas:E (2.2) BS01 ZN N/A N/A N/A N/A
    874056 8uas:E (2.2) BS02 ZN N/A N/A N/A N/A
    874057 8uas:E (2.2) BS03 W3O N/A N/A N/A N/A
    874058 8uas:F (2.2) BS01 ZN N/A N/A N/A N/A
    874059 8uas:F (2.2) BS02 ZN N/A N/A N/A N/A
    874060 8uas:F (2.2) BS03 W3O N/A N/A N/A N/A
    874061 8uas:G (2.2) BS01 ZN N/A N/A N/A N/A
    874062 8uas:G (2.2) BS02 ZN N/A N/A N/A N/A
    874063 8uas:G (2.2) BS03 W3O N/A N/A N/A N/A
    874064 8uas:H (2.2) BS01 ZN N/A N/A N/A N/A
    874065 8uas:H (2.2) BS02 ZN N/A N/A N/A N/A
    874066 8uas:H (2.2) BS03 W3O N/A N/A N/A N/A
    874067 8uas:I (2.2) BS01 ZN N/A N/A N/A N/A
    874068 8uas:I (2.2) BS02 ZN N/A N/A N/A N/A
    874069 8uas:I (2.2) BS03 W3O N/A N/A N/A N/A
    874070 8uas:J (2.2) BS01 ZN N/A N/A N/A N/A
    874071 8uas:J (2.2) BS02 ZN N/A N/A N/A N/A
    874072 8uas:J (2.2) BS03 W3O N/A N/A N/A N/A
    874073 8uas:K (2.2) BS01 ZN N/A N/A N/A N/A
    874074 8uas:K (2.2) BS02 ZN N/A N/A N/A N/A
    874075 8uas:K (2.2) BS03 W3O N/A N/A N/A N/A
    874076 8uas:L (2.2) BS01 W3O N/A N/A N/A N/A
    874077 8uas:L (2.2) BS02 ZN N/A N/A N/A N/A
    874078 8uas:L (2.2) BS03 ZN N/A N/A N/A N/A
    874079 8uat:A (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874080 8uat:A (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    874081 8uat:B (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874082 8uat:B (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    874083 8uat:C (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874084 8uat:D (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874085 8uat:E (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874086 8uat:E (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    874087 8uat:F (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874088 8uat:F (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    874089 8uat:G (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874090 8uat:H (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    874091 8uau:A (5.7) BS01 peptide N/A N/A O95260 39068213
    874092 8uau:A (5.7) BS02 rna N/A N/A O95260 39068213
    874093 8ubq:A (2.001) BS01 W9H N/A N/A P0AEG4 N/A
    874094 8ubq:B (2.001) BS01 SW0 N/A N/A P0AEG4 N/A
    874095 8ubr:A (2.7) BS01 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    874096 8ubr:A (2.7) BS02 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    874097 8ubr:A (2.7) BS03 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    874098 8ubr:A (2.7) BS04 LBN 5.6.1.6 GO:0005254 ... P13569 38422021
    874099 8ubr:A (2.7) BS05 CLR 5.6.1.6 GO:0005254 ... P13569 38422021
    874100 8ubr:A (2.7) BS06 WG5 5.6.1.6 GO:0005254 ... P13569 38422021
    874101 8ubr:A (2.7) BS07 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    874102 8ubw:A (2.59) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874103 8ubw:A (2.59) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874104 8ubw:A (2.59) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874105 8ubw:A (2.59) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    874106 8ubx:A (2.5) BS01 ETA ? GO:0001568 ... Q9Y5Y0 38693265
    874107 8ubx:A (2.5) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874108 8ubx:A (2.5) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874109 8ubx:A (2.5) BS04 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874110 8uby:A (2.67) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874111 8uby:A (2.67) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874112 8uby:A (2.67) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874113 8uby:A (2.67) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    874114 8ubz:A (3.02) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874115 8ubz:A (3.02) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874116 8ubz:A (3.02) BS03 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    874117 8uc0:A (2.42) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874118 8uc0:A (2.42) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    874119 8uc2:A (1.6) BS01 BEZ 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 38577885
    874120 8uc2:A (1.6) BS02 CA 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 38577885
    874121 8uc3:A (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    874122 8uc3:A (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    874123 8uc3:B (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    874124 8uc3:B (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    874125 8uc6:B (2.701) BS01 peptide 3.4.22.- N/A Q9Y6W3 37772788
    874126 8uc6:C (2.701) BS01 peptide 3.4.22.- N/A Q9Y6W3 37772788
    874127 8uc7:A (2.9) BS01 PFL N/A N/A O60741 39085604
    874128 8uc7:B (2.9) BS01 PFL N/A N/A O60741 39085604
    874129 8uc7:C (2.9) BS01 PFL N/A N/A O60741 39085604
    874130 8uc7:D (2.9) BS01 PFL N/A N/A O60741 39085604
    874131 8uc9:A (2.44) BS01 QBC ? GO:0005085 ... Q07890 38156904
    874132 8ucb:A (1.85) BS01 X1T N/A N/A Q9NWZ3 38467640
    874133 8ucb:B (1.85) BS01 X1T N/A N/A Q9NWZ3 38467640
    874134 8ucb:C (1.85) BS01 X1T N/A N/A Q9NWZ3 38467640
    874135 8ucb:D (1.85) BS01 X1T N/A N/A Q9NWZ3 38467640
    874136 8ucc:A (1.8) BS01 WFQ N/A N/A Q9NWZ3 38467640
    874137 8ucc:B (1.8) BS01 WFQ N/A N/A Q9NWZ3 38467640
    874138 8ucd:A (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    874139 8ucd:A (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    874140 8ucd:A (3.0) BS03 LBN ? GO:0005515 ... Q9UHE8 37861452
    874141 8ucd:A (3.0) BS04 HEM ? GO:0005515 ... Q9UHE8 37861452
    874142 8ucd:B (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    874143 8ucd:B (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    874144 8ucd:B (3.0) BS03 HEM ? GO:0005515 ... Q9UHE8 37861452
    874145 8ucd:C (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    874146 8ucd:C (3.0) BS02 LBN ? GO:0005515 ... Q9UHE8 37861452
    874147 8ucd:C (3.0) BS03 FAD ? GO:0005515 ... Q9UHE8 37861452
    874148 8ucd:C (3.0) BS04 HEM ? GO:0005515 ... Q9UHE8 37861452
    874149 8uce:A (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    874150 8uce:A (2.12) BS02 MG ? GO:0005524 ... A0A075LQ94 38421610
    874151 8uce:B (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    874152 8uce:B (2.12) BS02 MG ? GO:0005524 ... A0A075LQ94 38421610
    874153 8ucf:A (1.9) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874154 8ucg:A (1.86) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874155 8ucg:A (1.86) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874156 8ucg:A (1.86) BS03 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874157 8ucg:B (1.86) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874158 8ucg:B (1.86) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874159 8uch:A (2.14) BS01 ATP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874160 8uch:A (2.14) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874161 8uch:A (2.14) BS03 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874162 8uci:A (2.14) BS01 AMP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874163 8uci:A (2.14) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874164 8uci:B (2.14) BS01 AMP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874165 8uci:B (2.14) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    874166 8uct:A (2.93) BS01 3YT 2.7.11.1 GO:0004672 ... D6WMX4 N/A
    874167 8ucu:A (2.85) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874168 8ucu:A (2.85) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874169 8ucu:A (2.85) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874170 8ucu:A (2.85) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874171 8ucv:A (3.81) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874172 8ucv:A (3.81) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874173 8ucv:A (3.81) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874174 8ucv:A (3.81) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874175 8ucv:B (3.81) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    874176 8ucv:B (3.81) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    874177 8ucv:B (3.81) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    874178 8ucw:A (3.64) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874179 8ucw:A (3.64) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874180 8ucw:A (3.64) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874181 8ucw:A (3.64) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    874182 8ucx:A (1.57) BS01 MN 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    874183 8ud1:1B (2.1) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    874184 8ud1:1D (2.1) BS01 SF4 N/A N/A A0A8D1TTB3 38811722
    874185 8ud1:1E (2.1) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    874186 8ud1:1F (2.1) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    874187 8ud1:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    874188 8ud1:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    874189 8ud1:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    874190 8ud1:1G (2.1) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    874191 8ud1:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    874192 8ud1:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    874193 8ud1:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    874194 8ud1:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    874195 8ud1:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    874196 8ud1:1U (2.1) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    874197 8ud1:1W (2.1) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    874198 8ud1:1d (2.1) BS01 AME N/A GO:0005737 ... A0A480JRW3 38811722
    874199 8ud1:1h (2.1) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    874200 8ud1:1n (2.1) BS01 EHZ N/A N/A K7GSE5 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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