Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4357 4358 4359 4360 4361 4362 4363 4364 4365 4366 4367 4368 4369 4370 4371 4372 4373 4374 4375 4376 4377 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    873201 8u3n:C (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    873202 8u3n:C (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    873203 8u3o:A (1.88) BS01 O69 N/A N/A A0A7U3H5H9 N/A
    873204 8u3o:B (1.88) BS01 O69 N/A N/A A0A7U3H5H9 N/A
    873205 8u3p:A (1.79) BS01 HEM N/A N/A A0A0D5ZBI4 N/A
    873206 8u3p:B (1.79) BS01 HEM N/A N/A A0A0D5ZBI4 N/A
    873207 8u3p:C (1.79) BS01 HEM N/A N/A A0A0D5ZBI4 N/A
    873208 8u3p:D (1.79) BS01 HEM N/A N/A A0A0D5ZBI4 N/A
    873209 8u3y:A (3.1) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    873210 8u3y:A (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    873211 8u3y:A (3.1) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    873212 8u3y:A (3.1) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    873213 8u3y:A (3.1) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    873214 8u3y:A (3.1) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    873215 8u3y:A (3.1) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    873216 8u3z:A (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    873217 8u3z:A (3.6) BS02 MG 3.6.5.- GO:0000226 ... P68363 38658656
    873218 8u3z:B (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    873219 8u3z:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    873220 8u3z:E (3.6) BS02 MG ? GO:0000226 ... P07437 38658656
    873221 8u3z:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    873222 8u3z:N (3.6) BS01 ATP 6.3.2.- GO:0001578 ... A4Q9E8 38658656
    873223 8u41:A (2.72) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    873224 8u41:A (2.72) BS02 HIS N/A N/A A0A9X4Y9G9 39143299
    873225 8u41:B (2.72) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    873226 8u41:B (2.72) BS02 HIS N/A N/A A0A9X4Y9G9 39143299
    873227 8u42:A (2.0) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    873228 8u42:B (2.0) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    873229 8u43:A (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    873230 8u43:B (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    873231 8u43:C (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    873232 8u43:D (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    873233 8u45:C (2.1) BS01 CA 3.4.21.63 GO:0004252 ... P28296 37864071
    873234 8u48:A (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    873235 8u48:A (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    873236 8u48:A (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    873237 8u48:A (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    873238 8u48:A (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    873239 8u48:A (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    873240 8u48:B (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    873241 8u48:B (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    873242 8u48:B (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    873243 8u48:B (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    873244 8u48:B (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    873245 8u48:B (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    873246 8u49:A (1.8) BS01 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873247 8u49:A (1.8) BS02 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873248 8u4a:A (1.97) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873249 8u4a:A (1.97) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873250 8u4a:A (1.97) BS03 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873251 8u4a:A (1.97) BS04 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873252 8u4d:A (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    873253 8u4d:A (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    873254 8u4d:B (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    873255 8u4d:B (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    873256 8u4d:C (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    873257 8u4d:C (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    873258 8u4d:D (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    873259 8u4d:D (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    873260 8u4f:A (2.01) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873261 8u4f:A (2.01) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873262 8u4f:A (2.01) BS03 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873263 8u4f:A (2.01) BS04 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873264 8u4f:A (2.01) BS05 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873265 8u4f:A (2.01) BS06 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    873266 8u4j:B (3.7) BS01 MAN 2.7.10.1 N/A Q15303 38498590
    873267 8u4n:R (2.72) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873268 8u4o:R (3.29) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873269 8u4p:R (3.15) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873270 8u4p:R (3.15) BS02 VH6 ? GO:0001618 ... P42212
    P61073    		 N/A
    873271 8u4q:R (3.36) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873272 8u4r:R (3.1) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873273 8u4s:C (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873274 8u4s:C (3.35) BS02 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    873275 8u4s:C (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873276 8u4s:C (3.35) BS04 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    873277 8u4s:G (3.35) BS01 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    873278 8u4s:G (3.35) BS02 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873279 8u4s:G (3.35) BS03 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    873280 8u4s:G (3.35) BS04 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873281 8u4s:R (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873282 8u4s:R (3.35) BS02 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    873283 8u4s:R (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    873284 8u4s:R (3.35) BS04 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    873285 8u4t:AA (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    873286 8u4t:AA (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    873287 8u4t:AA (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    873288 8u4t:I (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    873289 8u4t:I (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    873290 8u4t:I (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    873291 8u4t:Q (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    873292 8u4t:Q (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    873293 8u4t:Q (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    873294 8u4t:R (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    873295 8u4t:R (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    873296 8u4t:R (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    873297 8u4v:A (2.99) BS01 AV0 ? GO:0004888 ... O14493 38886509
    873298 8u4v:H (2.99) BS01 AV0 N/A N/A N/A 38886509
    873299 8u4w:A (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    873300 8u4w:B (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    873301 8u4w:C (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    873302 8u4w:D (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    873303 8u4x:A (2.81) BS01 LBV N/A N/A Q885D3 39127720
    873304 8u4x:B (2.81) BS01 LBV N/A N/A Q885D3 39127720
    873305 8u4z:A (2.39) BS01 MH0 N/A GO:0004601 ... N/A 38519509
    873306 8u51:A (2.41) BS01 peptide N/A N/A N/A 38519509
    873307 8u53:A (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    873308 8u53:A (2.6) BS02 82T ? GO:0000325 ... Q9C8G5 38592763
    873309 8u53:B (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    873310 8u53:B (2.6) BS02 82T ? GO:0000325 ... Q9C8G5 38592763
    873311 8u56:A (2.75) BS01 LMN N/A N/A Q7Z3F1 N/A
    873312 8u56:A (2.75) BS02 Y01 N/A N/A Q7Z3F1 N/A
    873313 8u56:B (2.75) BS01 LMN N/A N/A Q7Z3F1 N/A
    873314 8u56:B (2.75) BS02 Y01 N/A N/A Q7Z3F1 N/A
    873315 8u57:A (2.0) BS01 8PF N/A N/A P37231 38494006
    873316 8u57:A (2.0) BS02 8PF N/A N/A P37231 38494006
    873317 8u57:A (2.0) BS03 8PF N/A N/A P37231 38494006
    873318 8u57:A (2.0) BS04 8PF N/A N/A P37231 38494006
    873319 8u59:A (1.77) BS01 5V9 N/A N/A P0AEG4 N/A
    873320 8u59:B (1.77) BS01 SW0 N/A N/A P0AEG4 N/A
    873321 8u5a:A (2.0) BS01 HEM N/A GO:0015671 ... N/A 38194293
    873322 8u5a:B (2.0) BS01 HEM N/A GO:0015671 ... N/A 38194293
    873323 8u5b:A (5.3) BS01 AV0 ? GO:0004888 ... O14493 38886509
    873324 8u5b:H (5.3) BS01 AV0 N/A N/A N/A 38886509
    873325 8u5c:E (2.68) BS01 Y01 N/A N/A Q7Z3F1 N/A
    873326 8u5c:E (2.68) BS02 Y01 N/A N/A Q7Z3F1 N/A
    873327 8u5c:F (2.68) BS01 Y01 N/A N/A Q7Z3F1 N/A
    873328 8u5c:F (2.68) BS02 Y01 N/A N/A Q7Z3F1 N/A
    873329 8u5g:A (3.2) BS01 peptide 3.1.3.16 GO:0016787 ... P62136 38042495
    873330 8u5g:A (3.2) BS02 FE 3.1.3.16 GO:0016787 ... P62136 38042495
    873331 8u5h:I (3.23) BS01 dna ? GO:0000786 ... P02302 N/A
    873332 8u5h:I (3.23) BS02 dna ? GO:0000786 ... P02302 N/A
    873333 8u5h:J (3.23) BS01 dna ? GO:0000786 ... P62799 N/A
    873334 8u5h:J (3.23) BS02 dna ? GO:0000786 ... P62799 N/A
    873335 8u5h:K (3.23) BS01 peptide ? GO:0000786 ... P06897 N/A
    873336 8u5h:K (3.23) BS02 dna ? GO:0000786 ... P06897 N/A
    873337 8u5h:K (3.23) BS03 dna ? GO:0000786 ... P06897 N/A
    873338 8u5h:M (3.23) BS01 peptide ? GO:0000786 ... P02281 N/A
    873339 8u5h:M (3.23) BS02 dna ? GO:0000786 ... P02281 N/A
    873340 8u5h:M (3.23) BS03 dna ? GO:0000786 ... P02281 N/A
    873341 8u5h:O (3.23) BS01 peptide ? GO:0000786 ... P02302 N/A
    873342 8u5h:O (3.23) BS02 dna ? GO:0000786 ... P02302 N/A
    873343 8u5h:O (3.23) BS03 dna ? GO:0000786 ... P02302 N/A
    873344 8u5h:Q (3.23) BS01 dna ? GO:0000786 ... P62799 N/A
    873345 8u5h:Q (3.23) BS02 dna ? GO:0000786 ... P62799 N/A
    873346 8u5h:R (3.23) BS01 dna ? GO:0000786 ... P06897 N/A
    873347 8u5h:R (3.23) BS02 dna ? GO:0000786 ... P06897 N/A
    873348 8u5h:S (3.23) BS01 dna ? GO:0000786 ... P02281 N/A
    873349 8u5h:S (3.23) BS02 dna ? GO:0000786 ... P02281 N/A
    873350 8u5m:A (2.46) BS01 VJX 3.1.3.48 N/A Q8TF42 38252624
    873351 8u5m:C (2.46) BS01 VJX 3.1.3.48 N/A Q8TF42 38252624
    873352 8u5m:D (2.46) BS01 VJX 3.1.3.48 N/A Q8TF42 38252624
    873353 8u5n:A (3.0) BS01 IAC N/A N/A Q7Z3F1 N/A
    873354 8u5o:A (1.5) BS01 NGC N/A N/A N/A 39251137
    873355 8u5o:A (1.5) BS02 CA N/A N/A N/A 39251137
    873356 8u5o:A (1.5) BS03 CA N/A N/A N/A 39251137
    873357 8u5q:A (2.4) BS01 IAC N/A N/A Q7Z3F1 N/A
    873358 8u5q:C (2.4) BS01 IAC N/A N/A Q7Z3F1 N/A
    873359 8u5v:A (2.77) BS01 IAC N/A N/A Q7Z3F1 N/A
    873360 8u5v:A (2.77) BS02 Y01 N/A N/A Q7Z3F1 N/A
    873361 8u5x:A (2.79) BS01 IAC N/A N/A Q7Z3F1 N/A
    873362 8u5y:A (3.01) BS01 dna ? GO:0003677 ... Q6NSI4 37786681
    873363 8u5y:B (3.01) BS01 dna ? GO:0003677 ... Q6NSI4 37786681
    873364 8u5y:C (3.01) BS01 dna ? GO:0003677 ... Q6NSI4 37786681
    873365 8u61:A (4.0) BS01 dna ? GO:0003677 ... Q6NSI4 38466836
    873366 8u61:B (4.0) BS01 dna ? GO:0003677 ... Q6NSI4 38466836
    873367 8u61:C (4.0) BS01 dna ? GO:0003677 ... Q6NSI4 38466836
    873368 8u62:A (3.3) BS01 LBV N/A N/A Q885D3 39127720
    873369 8u62:B (3.3) BS01 LBV N/A N/A Q885D3 39127720
    873370 8u63:A (3.01) BS01 LBV N/A N/A Q885D3 39127720
    873371 8u63:B (3.01) BS01 LBV N/A N/A Q885D3 39127720
    873372 8u64:A (3.13) BS01 LBV N/A N/A Q885D3 39127720
    873373 8u64:B (3.13) BS01 LBV N/A N/A Q885D3 39127720
    873374 8u65:A (3.01) BS01 LBV N/A N/A Q885D3 39127720
    873375 8u65:B (3.01) BS01 LBV N/A N/A Q885D3 39127720
    873376 8u66:A (2.21) BS01 MG N/A GO:0000287 ... N/A 37979578
    873377 8u66:A (2.21) BS02 CAP N/A GO:0000287 ... N/A 37979578
    873378 8u66:A (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    873379 8u66:B (2.21) BS01 CAP N/A GO:0000287 ... N/A 37979578
    873380 8u66:B (2.21) BS02 MG N/A GO:0000287 ... N/A 37979578
    873381 8u66:B (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    873382 8u66:C (2.21) BS01 MG N/A GO:0000287 ... N/A 37979578
    873383 8u66:C (2.21) BS02 CAP N/A GO:0000287 ... N/A 37979578
    873384 8u66:C (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    873385 8u66:D (2.21) BS01 CAP N/A GO:0000287 ... N/A 37979578
    873386 8u66:D (2.21) BS02 MG N/A GO:0000287 ... N/A 37979578
    873387 8u66:D (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    873388 8u66:E (2.21) BS01 MG N/A GO:0000287 ... N/A 37979578
    873389 8u66:E (2.21) BS02 CAP N/A GO:0000287 ... N/A 37979578
    873390 8u66:E (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    873391 8u66:F (2.21) BS01 CAP N/A GO:0000287 ... N/A 37979578
    873392 8u66:F (2.21) BS02 MG N/A GO:0000287 ... N/A 37979578
    873393 8u66:F (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    873394 8u66:G (2.21) BS01 MG N/A GO:0000287 ... N/A 37979578
    873395 8u66:G (2.21) BS02 CAP N/A GO:0000287 ... N/A 37979578
    873396 8u66:G (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    873397 8u66:H (2.21) BS01 CAP N/A GO:0000287 ... N/A 37979578
    873398 8u66:H (2.21) BS02 MG N/A GO:0000287 ... N/A 37979578
    873399 8u66:H (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    873400 8u69:A (2.45) BS01 VQ0 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37883896
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218