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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    872801 8tyq:A (2.99) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    872802 8tys:A (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    872803 8tys:C (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    872804 8tys:D (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    872805 8tys:F (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    872806 8tyv:A (1.85) BS01 I8P ? N/A Q9UBH6 N/A
    872807 8tyv:B (1.85) BS01 I8P ? N/A Q9UBH6 N/A
    872808 8tyx:B (1.36) BS01 ZN N/A N/A N/A 39020180
    872809 8tyy:B (1.68) BS01 ZN N/A N/A N/A 39020180
    872810 8tyz:A (2.68) BS01 ZN N/A N/A N/A 39020180
    872811 8tz0:A (2.47) BS01 ZN N/A N/A N/A 39020180
    872812 8tz0:B (2.47) BS01 ZN N/A N/A N/A 39020180
    872813 8tz1:A (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    872814 8tz1:A (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872815 8tz1:A (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872816 8tz1:A (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    872817 8tz1:A (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    872818 8tz1:B (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    872819 8tz1:B (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872820 8tz1:B (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872821 8tz1:B (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    872822 8tz1:B (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    872823 8tz1:C (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    872824 8tz1:C (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872825 8tz1:C (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872826 8tz1:C (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    872827 8tz1:C (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    872828 8tz2:A (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    872829 8tz2:A (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872830 8tz2:B (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    872831 8tz2:B (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872832 8tz2:C (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    872833 8tz2:C (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872834 8tz3:A (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    872835 8tz3:A (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872836 8tz3:A (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872837 8tz3:B (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    872838 8tz3:B (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872839 8tz3:B (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872840 8tz3:C (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    872841 8tz3:C (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872842 8tz3:C (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872843 8tz4:A (3.23) BS01 U08 ? GO:0005337 ... F1MGR1 38418906
    872844 8tz5:A (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    872845 8tz5:A (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872846 8tz5:A (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872847 8tz5:A (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    872848 8tz5:A (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    872849 8tz5:B (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    872850 8tz5:B (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872851 8tz5:B (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872852 8tz5:B (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    872853 8tz5:B (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    872854 8tz5:C (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    872855 8tz5:C (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872856 8tz5:C (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872857 8tz5:C (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    872858 8tz5:C (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    872859 8tz6:A (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    872860 8tz6:A (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872861 8tz6:A (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872862 8tz6:A (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    872863 8tz6:B (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    872864 8tz6:B (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872865 8tz6:B (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872866 8tz6:B (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    872867 8tz6:C (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    872868 8tz6:C (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872869 8tz6:C (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    872870 8tz6:C (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    872871 8tz7:A (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872872 8tz7:A (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872873 8tz7:B (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872874 8tz7:B (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872875 8tz7:C (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872876 8tz7:C (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872877 8tz8:A (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872878 8tz8:A (3.19) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872879 8tz8:B (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872880 8tz8:C (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872881 8tz8:C (3.19) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872882 8tz9:A (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872883 8tz9:B (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872884 8tz9:C (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872885 8tza:A (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872886 8tza:B (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872887 8tza:C (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872888 8tzb:A (3.1) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    872889 8tzc:A (2.7) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    872890 8tzc:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    872891 8tzd:A (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872892 8tzd:A (3.2) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    872893 8tzd:B (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872894 8tzd:C (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    872895 8tze:A (2.9) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    872896 8tzf:A (3.4) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    872897 8tzf:A (3.4) BS02 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    872898 8tzg:A (2.7) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    872899 8tzg:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    872900 8tzg:A (2.7) BS03 MG 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    872901 8tzh:A (3.9) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    872902 8tzh:A (3.9) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    872903 8tzi:A (2.7) BS01 U00 N/A N/A Q99808 N/A
    872904 8tzj:A (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    872905 8tzj:B (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    872906 8tzk:A (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    872907 8tzk:B (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    872908 8tzl:A (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    872909 8tzl:B (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    872910 8tzo:C (3.1) BS01 BMA ? GO:0005509 ... P27797 37852257
    872911 8tzo:C (3.1) BS02 MAN ? GO:0005509 ... P27797 37852257
    872912 8tzo:C (3.1) BS03 MAN ? GO:0005509 ... P27797 37852257
    872913 8tzo:C (3.1) BS04 GLC ? GO:0005509 ... P27797 37852257
    872914 8tzo:C (3.1) BS05 CA ? GO:0005509 ... P27797 37852257
    872915 8tzq:R (3.2) BS01 LDP N/A N/A P14416 39103320
    872916 8tzr:C (3.5) BS01 BMA ? GO:0005509 ... P27797 N/A
    872917 8tzr:C (3.5) BS02 MAN ? GO:0005509 ... P27797 N/A
    872918 8tzr:C (3.5) BS03 MAN ? GO:0005509 ... P27797 N/A
    872919 8tzv:B (2.8) BS01 ZN N/A N/A O95260 39068213
    872920 8tzx:A (3.15) BS01 peptide N/A N/A Q96SW2 38963839
    872921 8tzx:A (3.15) BS02 ZN N/A N/A Q96SW2 38963839
    872922 8tzx:A (3.15) BS03 U3I N/A N/A Q96SW2 38963839
    872923 8tzx:D (3.15) BS01 peptide N/A N/A Q96SW2 38963839
    872924 8tzx:D (3.15) BS02 ZN N/A N/A Q96SW2 38963839
    872925 8tzx:D (3.15) BS03 U3I N/A N/A Q96SW2 38963839
    872926 8tzz:A (3.56) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    872927 8tzz:A (3.56) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    872928 8tzz:A (3.56) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    872929 8tzz:A (3.56) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    872930 8u00:A (1.85) BS01 ZN ? N/A Q9A6F5 N/A
    872931 8u00:A (1.85) BS02 ZN ? N/A Q9A6F5 N/A
    872932 8u00:A (1.85) BS03 ZN ? N/A Q9A6F5 N/A
    872933 8u00:B (1.85) BS01 ZN ? N/A Q9A6F5 N/A
    872934 8u00:B (1.85) BS02 ZN ? N/A Q9A6F5 N/A
    872935 8u00:B (1.85) BS03 ZN ? N/A Q9A6F5 N/A
    872936 8u02:R (3.28) BS01 LDP N/A N/A P14416 39103320
    872937 8u05:A (1.62) BS01 NAP N/A N/A A0A0F7G0Y4 N/A
    872938 8u05:B (1.62) BS01 NAP N/A N/A A0A0F7G0Y4 N/A
    872939 8u06:A (1.6) BS01 NAP N/A N/A A0A0F7G0Y4 N/A
    872940 8u06:A (1.6) BS02 A7F N/A N/A A0A0F7G0Y4 N/A
    872941 8u06:A (1.6) BS03 A7F N/A N/A A0A0F7G0Y4 N/A
    872942 8u06:B (1.6) BS01 A7F N/A N/A A0A0F7G0Y4 N/A
    872943 8u06:B (1.6) BS02 NAP N/A N/A A0A0F7G0Y4 N/A
    872944 8u06:B (1.6) BS03 A7F N/A N/A A0A0F7G0Y4 N/A
    872945 8u07:A (1.63) BS01 A7F N/A N/A A0A0F7G0Y4 N/A
    872946 8u07:A (1.63) BS02 NAP N/A N/A A0A0F7G0Y4 N/A
    872947 8u07:A (1.63) BS03 A7F N/A N/A A0A0F7G0Y4 N/A
    872948 8u07:B (1.63) BS01 A7F N/A N/A A0A0F7G0Y4 N/A
    872949 8u07:B (1.63) BS02 NAP N/A N/A A0A0F7G0Y4 N/A
    872950 8u07:B (1.63) BS03 A7F N/A N/A A0A0F7G0Y4 N/A
    872951 8u09:A (1.98) BS01 HEM N/A N/A N/A N/A
    872952 8u0f:C (2.07) BS01 PUB N/A N/A Q1AH60 N/A
    872953 8u0f:L (2.07) BS01 PUB N/A N/A Q1AH60 N/A
    872954 8u0h:A (1.93) BS01 UB0 N/A N/A P17706 39152201
    872955 8u0h:B (1.93) BS01 UB0 N/A N/A P17706 39152201
    872956 8u0i:A (1.541) BS01 C2E N/A N/A Q9I7B4 N/A
    872957 8u0i:A (1.541) BS02 C2E N/A N/A Q9I7B4 N/A
    872958 8u0j:A (3.1) BS01 dna N/A GO:0003674 ... Q9KR73 38740055
    872959 8u0j:A (3.1) BS02 dna N/A GO:0003674 ... Q9KR73 38740055
    872960 8u0j:A (3.1) BS03 dna N/A GO:0003674 ... Q9KR73 38740055
    872961 8u0k:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872962 8u0k:A (2.5) BS02 4LR 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872963 8u0k:B (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872964 8u0k:B (2.5) BS02 4LR 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872965 8u0l:A (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872966 8u0l:A (2.8) BS02 U4R 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872967 8u0l:B (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872968 8u0l:B (2.8) BS02 U4R 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872969 8u0m:A (2.54) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872970 8u0m:A (2.54) BS02 U5O 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872971 8u0m:B (2.54) BS01 ATP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872972 8u0m:B (2.54) BS02 U5O 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872973 8u0n:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872974 8u0n:A (2.5) BS02 U69 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872975 8u0n:B (2.5) BS01 U69 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872976 8u0n:B (2.5) BS02 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    872977 8u0o:A (2.05) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    872978 8u0o:A (2.05) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    872979 8u0p:A (1.9) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    872980 8u0p:A (1.9) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    872981 8u0p:A (1.9) BS03 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    872982 8u0p:A (1.9) BS04 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    872983 8u0p:A (1.9) BS05 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    872984 8u0p:A (1.9) BS06 DUP 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    872985 8u0q:A (1.69) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    872986 8u0q:A (1.69) BS02 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    872987 8u0q:A (1.69) BS03 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    872988 8u0q:B (1.69) BS01 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    872989 8u0q:B (1.69) BS02 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    872990 8u0q:B (1.69) BS03 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    872991 8u0r:D (2.3) BS01 PDO N/A N/A P68711 N/A
    872992 8u0t:A (3.2) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... A0A0N7IQX6 37989312
    872993 8u0u:A (3.04) BS01 dna N/A N/A Q9KR72 38740055
    872994 8u0u:F (3.04) BS01 dna N/A N/A Q9KR72 38740055
    872995 8u0v:A (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    872996 8u0v:A (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    872997 8u0v:B (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    872998 8u0v:B (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    872999 8u0v:C (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    873000 8u0v:C (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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