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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    872601 8twb:2 (3.2) BS01 dna N/A N/A P40348 N/A
    872602 8twb:2 (3.2) BS02 AGS N/A N/A P40348 N/A
    872603 8twb:2 (3.2) BS03 MG N/A N/A P40348 N/A
    872604 8twb:3 (3.2) BS01 AGS N/A N/A P38629 N/A
    872605 8twb:3 (3.2) BS02 MG N/A N/A P38629 N/A
    872606 8twb:4 (3.2) BS01 AGS N/A N/A P40339 N/A
    872607 8twb:5 (3.2) BS01 dna N/A N/A P38251 N/A
    872608 8twb:5 (3.2) BS02 AGS N/A N/A P38251 N/A
    872609 8twb:5 (3.2) BS03 ADP N/A N/A P38251 N/A
    872610 8twe:A (2.55) BS01 peptide ? GO:0000159 ... P30153 38123684
    872611 8twe:B (2.55) BS01 peptide ? GO:0000159 ... P63151 38123684
    872612 8twe:B (2.55) BS02 peptide ? GO:0000159 ... P63151 38123684
    872613 8twf:A (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    872614 8twf:B (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    872615 8twf:C (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    872616 8twf:D (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    872617 8twg:B (1.8) BS01 FAD N/A GO:0004497 ... A0A222NYA8 38493211
    872618 8twi:C (2.69) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 38123684
    872619 8twi:C (2.69) BS02 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    872620 8twi:C (2.69) BS03 ZN 3.1.3.16 GO:0000159 ... P67775 38123684
    872621 8twj:A (1.9) BS01 UDP ? GO:0005576 ... P13835 38354245
    872622 8twn:A (2.08) BS01 67I N/A N/A A0A861B387 N/A
    872623 8two:A (2.09) BS01 peptide ? GO:0005576 ... P13835 38354245
    872624 8two:A (2.09) BS02 UDP ? GO:0005576 ... P13835 38354245
    872625 8two:A (2.09) BS03 RAM ? GO:0005576 ... P13835 38354245
    872626 8tws:A (2.85) BS01 peptide ? GO:0005576 ... P13835 38354245
    872627 8tws:A (2.85) BS02 AWU ? GO:0005576 ... P13835 38354245
    872628 8twt:A (2.3) BS01 67I N/A N/A A0A861B387 N/A
    872629 8twt:A (2.3) BS02 FE N/A N/A A0A861B387 N/A
    872630 8twt:B (2.3) BS01 67I N/A N/A A0A861B387 N/A
    872631 8twt:B (2.3) BS02 FE N/A N/A A0A861B387 N/A
    872632 8twt:B (2.3) BS03 FE N/A N/A A0A861B387 N/A
    872633 8twu:A (1.84) BS01 HEM ? GO:0004497 ... A0A9X9ZA09 37611404
    872634 8twu:A (1.84) BS02 RQB ? GO:0004497 ... A0A9X9ZA09 37611404
    872635 8twu:A (1.84) BS03 RQB ? GO:0004497 ... A0A9X9ZA09 37611404
    872636 8twu:A (1.84) BS04 ZN ? GO:0004497 ... A0A9X9ZA09 37611404
    872637 8twv:A (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872638 8twv:B (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872639 8twv:C (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872640 8twv:D (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872641 8twv:E (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872642 8tww:A (2.0) BS01 67I N/A N/A A0A861B387 N/A
    872643 8tww:A (2.0) BS02 FE N/A N/A A0A861B387 N/A
    872644 8tww:A (2.0) BS03 FE N/A N/A A0A861B387 N/A
    872645 8tww:A (2.0) BS04 FE N/A N/A A0A861B387 N/A
    872646 8tww:B (2.0) BS01 67I N/A N/A A0A861B387 N/A
    872647 8tww:B (2.0) BS02 FE N/A N/A A0A861B387 N/A
    872648 8tww:B (2.0) BS03 FE N/A N/A A0A861B387 N/A
    872649 8twx:A (2.7) BS01 VI7 N/A N/A P09960 N/A
    872650 8twx:A (2.7) BS02 ZN N/A N/A P09960 N/A
    872651 8twx:B (2.7) BS01 VI7 N/A N/A P09960 N/A
    872652 8twx:B (2.7) BS02 ZN N/A N/A P09960 N/A
    872653 8twx:C (2.7) BS01 ZN N/A N/A P09960 N/A
    872654 8twy:A (2.67) BS01 RNX N/A N/A P42336 N/A
    872655 8twz:A (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872656 8twz:B (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872657 8twz:C (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872658 8twz:D (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872659 8twz:E (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    872660 8tx0:A (2.0) BS01 VEU N/A N/A Q9NWZ3 38695469
    872661 8tx0:B (2.0) BS01 VEU N/A N/A Q9NWZ3 38695469
    872662 8tx5:A (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    872663 8tx5:B (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    872664 8tx5:C (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    872665 8tx5:D (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    872666 8tx6:A (1.56) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    872667 8tx6:A (1.56) BS02 CA N/A GO:0005576 ... P0CS93 N/A
    872668 8tx9:A (2.01) BS01 BMX N/A N/A A0A064C3N8 N/A
    872669 8tx9:A (2.01) BS02 BMX N/A N/A A0A064C3N8 N/A
    872670 8tx9:B (2.01) BS01 BMX N/A N/A A0A064C3N8 N/A
    872671 8tx9:B (2.01) BS02 BMX N/A N/A A0A064C3N8 N/A
    872672 8tx9:B (2.01) BS03 BMX N/A N/A A0A064C3N8 N/A
    872673 8tx9:C (2.01) BS01 BMX N/A N/A A0A064C3N8 N/A
    872674 8tx9:C (2.01) BS02 BMX N/A N/A A0A064C3N8 N/A
    872675 8tx9:D (2.01) BS01 BMX N/A N/A A0A064C3N8 N/A
    872676 8tx9:D (2.01) BS02 BMX N/A N/A A0A064C3N8 N/A
    872677 8txe:A (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    872678 8txe:A (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    872679 8txe:B (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    872680 8txe:B (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    872681 8txf:A (1.29) BS01 peptide ? GO:0005576 ... P13835 38354245
    872682 8txg:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    872683 8txg:A (1.5) BS02 VQT 3.6.5.2 GO:0003924 ... P01116 37849557
    872684 8txh:A (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    872685 8txh:A (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    872686 8txh:B (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    872687 8txh:B (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    872688 8txj:A (1.4) BS01 GDP N/A N/A P01116 N/A
    872689 8txk:A (1.38) BS01 GDP N/A N/A P01116 N/A
    872690 8txm:A (3.25) BS01 MG N/A N/A C3W5S1 38935072
    872691 8txn:A (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    872692 8txn:A (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    872693 8txn:D (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    872694 8txn:D (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    872695 8txo:I (3.1) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    872696 8txo:I (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    872697 8txo:I (3.1) BS03 S9F 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    872698 8txo:J (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    872699 8txo:J (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    872700 8txo:J (3.1) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    872701 8txo:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    872702 8txo:J (3.1) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    872703 8txo:J (3.1) BS06 S9F 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    872704 8txv:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    872705 8txv:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    872706 8txv:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    872707 8txv:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    872708 8txv:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    872709 8txv:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    872710 8txv:D (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    872711 8txv:D (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    872712 8txv:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    872713 8txv:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    872714 8txv:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    872715 8txv:F (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    872716 8txv:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    872717 8txv:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    872718 8txv:G (3.8) BS03 peptide ? GO:0000786 ... P04908 38242129
    872719 8txv:H (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    872720 8txv:H (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    872721 8txv:H (3.8) BS03 peptide ? GO:0000786 ... P62807 38242129
    872722 8txw:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    872723 8txw:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    872724 8txw:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    872725 8txw:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    872726 8txw:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    872727 8txw:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    872728 8txw:D (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    872729 8txw:D (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    872730 8txw:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    872731 8txw:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    872732 8txw:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    872733 8txw:F (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    872734 8txw:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    872735 8txw:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    872736 8txw:G (3.6) BS03 peptide ? GO:0000786 ... P04908 38242129
    872737 8txw:H (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    872738 8txw:H (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    872739 8txw:H (3.6) BS03 peptide ? GO:0000786 ... P62807 38242129
    872740 8txw:M (3.6) BS01 peptide ? N/A P0CG47 38242129
    872741 8txx:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    872742 8txx:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    872743 8txx:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    872744 8txx:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    872745 8txx:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    872746 8txx:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    872747 8txx:D (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    872748 8txx:D (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    872749 8txx:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    872750 8txx:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    872751 8txx:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    872752 8txx:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    872753 8txx:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    872754 8txx:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    872755 8txx:H (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    872756 8txx:H (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    872757 8txx:K (3.7) BS01 dna 2.3.2.27 GO:0000151 ... Q8IYW5 38242129
    872758 8txy:A (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q7KZI7 38147543
    872759 8txy:B (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q7KZI7 38147543
    872760 8txz:A (3.05) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    872761 8txz:A (3.05) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    872762 8ty0:A (1.54) BS01 SIK N/A N/A P22629 N/A
    872763 8ty0:B (1.54) BS01 SIK N/A N/A P22629 N/A
    872764 8ty0:C (1.54) BS01 SIK N/A N/A P22629 N/A
    872765 8ty0:D (1.54) BS01 SIK N/A N/A P22629 N/A
    872766 8ty2:A (1.41) BS01 GDP N/A N/A P01116 N/A
    872767 8ty3:A (1.85) BS01 SJF N/A N/A P0DTD1 N/A
    872768 8ty4:A (1.85) BS01 SO0 N/A N/A P0DTD1 N/A
    872769 8ty5:A (1.85) BS01 SQ3 N/A N/A P0DTD1 N/A
    872770 8ty8:A (1.4) BS01 GDP N/A N/A P01116 N/A
    872771 8ty9:A (1.43) BS01 GDP N/A N/A P01116 N/A
    872772 8tyc:A (3.3) BS01 MAN N/A N/A P08669 N/A
    872773 8tyc:B (3.3) BS01 MAN N/A N/A P08669 N/A
    872774 8tyc:C (3.3) BS01 MAN N/A N/A P08669 N/A
    872775 8tyc:b (3.3) BS01 BMA N/A N/A P08669
    Q9WXS1    		 N/A
    872776 8tye:A (3.8) BS01 FUC N/A N/A P08669 39243373
    872777 8tye:A (3.8) BS02 MAN N/A N/A P08669 39243373
    872778 8tye:L (3.8) BS01 MAN N/A N/A N/A 39243373
    872779 8tyf:A (2.59) BS01 T0F N/A N/A A5K302 N/A
    872780 8tyg:A (1.64) BS01 SKC N/A N/A A5K302 N/A
    872781 8tyg:A (1.64) BS02 TEW N/A N/A A5K302 N/A
    872782 8tyh:A (1.83) BS01 TEW N/A N/A A5KAC3 N/A
    872783 8tyj:A (1.9) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    872784 8tyj:B (1.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    872785 8tyj:B (1.9) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    872786 8tym:B (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    872787 8tym:B (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    872788 8tym:C (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    872789 8tym:C (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    872790 8tym:c (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    872791 8tym:c (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    872792 8tym:f (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    872793 8tym:f (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    872794 8tyn:C (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    872795 8tyn:C (3.26) BS02 MG 3.6.5.5 N/A Q05193 38663399
    872796 8tyn:F (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    872797 8tyn:F (3.26) BS02 MG 3.6.5.5 N/A Q05193 38663399
    872798 8tyn:c (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    872799 8tyn:f (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    872800 8typ:A (1.8) BS01 SQT 3.4.21.42 GO:0004252 ... P09871 38149922
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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