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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    872401 8tue:H (2.1) BS01 ZN N/A N/A P09528 N/A
    872402 8tue:M (2.1) BS01 ZN N/A N/A P09528 N/A
    872403 8tue:N (2.1) BS01 ZN N/A N/A P09528 N/A
    872404 8tue:O (2.1) BS01 ZN N/A N/A P09528 N/A
    872405 8tue:P (2.1) BS01 ZN N/A N/A P09528 N/A
    872406 8tue:Q (2.1) BS01 ZN N/A N/A P09528 N/A
    872407 8tue:R (2.1) BS01 ZN N/A N/A P09528 N/A
    872408 8tue:T (2.1) BS01 ZN N/A N/A P09528 N/A
    872409 8tue:U (2.1) BS01 ZN N/A N/A P09528 N/A
    872410 8tue:V (2.1) BS01 ZN N/A N/A P09528 N/A
    872411 8tue:W (2.1) BS01 ZN N/A N/A P09528 N/A
    872412 8tue:X (2.1) BS01 ZN N/A N/A P09528 N/A
    872413 8tug:A (3.5) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872414 8tug:A (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872415 8tug:A (3.5) BS03 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    872416 8tug:A (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872417 8tug:A (3.5) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872418 8tug:A (3.5) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    872419 8tug:B (3.5) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872420 8tug:B (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872421 8tug:B (3.5) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    872422 8tug:B (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    872423 8tug:C (3.5) BS01 ZN ? GO:0000428 ... P16370 38194460
    872424 8tug:E (3.5) BS01 dna ? GO:0000428 ... P20434 38194460
    872425 8tug:I (3.5) BS01 ZN ? GO:0000428 ... P27999 38194460
    872426 8tug:I (3.5) BS02 ZN ? GO:0000428 ... P27999 38194460
    872427 8tug:J (3.5) BS01 ZN ? GO:0000428 ... P22139 38194460
    872428 8tug:L (3.5) BS01 ZN ? GO:0000428 ... P40422 38194460
    872429 8tug:M (3.5) BS01 dna N/A N/A N/A 38194460
    872430 8tug:M (3.5) BS02 dna N/A N/A N/A 38194460
    872431 8tuh:A (2.20011) BS01 peptide ? N/A P01889 38684663
    872432 8tun:C (3.4) BS01 KJ9 ? GO:0005886 ... A0A2S5T447 38570679
    872433 8tun:D (3.4) BS01 KJ9 ? GO:0005886 ... A0A2S5T447 38570679
    872434 8tuq:A (2.0) BS01 peptide ? GO:0005737 ... P52293 38108201
    872435 8tur:A (2.15) BS01 peptide ? GO:0005737 ... P52293 38108201
    872436 8tus:A (2.6) BS01 peptide ? GO:0005737 ... P52293 38108201
    872437 8tut:A (2.55) BS01 peptide ? GO:0005737 ... P52293 38108201
    872438 8tuu:A (2.5) BS01 peptide ? GO:0005737 ... P52293 38108201
    872439 8tuv:A (2.3) BS01 peptide ? GO:0005737 ... P52293 38108201
    872440 8tuv:A (2.3) BS02 peptide ? GO:0005737 ... P52293 38108201
    872441 8tux:M (3.9) BS01 rna ? GO:0039666 ... Q38061 38574145
    872442 8tux:ab (3.9) BS01 rna ? GO:0003723 ... P03630 38574145
    872443 8tux:m (3.9) BS01 rna ? GO:0039666 ... Q38061 38574145
    872444 8tv5:C (4.6) BS01 MG N/A N/A P29317 N/A
    872445 8tv6:B (1.74) BS01 V83 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38592023
    872446 8tv7:A (1.5) BS01 VI1 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38592023
    872447 8tvi:A (3.2) BS01 ZN N/A GO:0019031 ... N/A 38593070
    872448 8tvi:B (3.2) BS01 ZN N/A GO:0019031 ... N/A 38593070
    872449 8tvi:C (3.2) BS01 ZN N/A GO:0019031 ... N/A 38593070
    872450 8tvi:D (3.2) BS01 ZN N/A GO:0019031 ... N/A 38593070
    872451 8tvk:A (1.04) BS01 GDP N/A N/A P01116 N/A
    872452 8tvm:A (2.1) BS01 VDC N/A N/A Q9NWZ3 38746903
    872453 8tvm:B (2.1) BS01 VDC N/A N/A Q9NWZ3 38746903
    872454 8tvm:C (2.1) BS01 VDC N/A N/A Q9NWZ3 38746903
    872455 8tvm:D (2.1) BS01 VDC N/A N/A Q9NWZ3 38746903
    872456 8tvn:A (1.95) BS01 VE9 N/A N/A Q9NWZ3 38746903
    872457 8tvn:B (1.95) BS01 VE9 N/A N/A Q9NWZ3 38746903
    872458 8tvn:C (1.95) BS01 VE9 N/A N/A Q9NWZ3 38746903
    872459 8tvn:D (1.95) BS01 VE9 N/A N/A Q9NWZ3 38746903
    872460 8tvp:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872461 8tvp:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    872462 8tvp:A (3.7) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872463 8tvp:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872464 8tvp:A (3.7) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872465 8tvp:A (3.7) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    872466 8tvp:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872467 8tvp:B (3.7) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872468 8tvp:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    872469 8tvp:C (3.7) BS01 ZN ? GO:0000428 ... P16370 38194460
    872470 8tvp:E (3.7) BS01 dna ? GO:0000428 ... P20434 38194460
    872471 8tvp:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    872472 8tvp:I (3.7) BS02 ZN ? GO:0000428 ... P27999 38194460
    872473 8tvp:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    872474 8tvp:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    872475 8tvp:M (3.7) BS01 dna N/A N/A N/A 38194460
    872476 8tvp:M (3.7) BS02 dna N/A N/A N/A 38194460
    872477 8tvq:A (4.6) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872478 8tvq:A (4.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872479 8tvq:A (4.6) BS03 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    872480 8tvq:A (4.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872481 8tvq:A (4.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872482 8tvq:A (4.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    872483 8tvq:B (4.6) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872484 8tvq:B (4.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872485 8tvq:B (4.6) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    872486 8tvq:B (4.6) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    872487 8tvq:C (4.6) BS01 ZN ? GO:0000428 ... P16370 38194460
    872488 8tvq:I (4.6) BS01 ZN ? GO:0000428 ... P27999 38194460
    872489 8tvq:J (4.6) BS01 ZN ? GO:0000428 ... P22139 38194460
    872490 8tvq:L (4.6) BS01 ZN ? GO:0000428 ... P40422 38194460
    872491 8tvq:M (4.6) BS01 dna N/A N/A N/A 38194460
    872492 8tvs:A (4.4) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872493 8tvs:A (4.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872494 8tvs:A (4.4) BS03 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    872495 8tvs:A (4.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872496 8tvs:A (4.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872497 8tvs:A (4.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    872498 8tvs:B (4.4) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872499 8tvs:B (4.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872500 8tvs:B (4.4) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    872501 8tvs:B (4.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    872502 8tvs:C (4.4) BS01 ZN ? GO:0000428 ... P16370 38194460
    872503 8tvs:I (4.4) BS01 ZN ? GO:0000428 ... P27999 38194460
    872504 8tvs:I (4.4) BS02 ZN ? GO:0000428 ... P27999 38194460
    872505 8tvs:J (4.4) BS01 ZN ? GO:0000428 ... P22139 38194460
    872506 8tvs:L (4.4) BS01 ZN ? GO:0000428 ... P40422 38194460
    872507 8tvs:M (4.4) BS01 dna N/A N/A N/A 38194460
    872508 8tvs:M (4.4) BS02 dna N/A N/A N/A 38194460
    872509 8tvt:A (2.0) BS01 PLP N/A N/A Q9Y697 N/A
    872510 8tvt:A (2.0) BS02 LPH N/A N/A Q9Y697 N/A
    872511 8tvt:B (2.0) BS01 EDT N/A N/A Q9HD34 N/A
    872512 8tvt:B (2.0) BS02 8Q1 N/A N/A Q9HD34 N/A
    872513 8tvv:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872514 8tvv:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    872515 8tvv:A (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872516 8tvv:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872517 8tvv:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    872518 8tvv:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872519 8tvv:B (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    872520 8tvv:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    872521 8tvv:C (3.7) BS01 ZN ? GO:0000428 ... P16370 38194460
    872522 8tvv:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    872523 8tvv:I (3.7) BS02 ZN ? GO:0000428 ... P27999 38194460
    872524 8tvv:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    872525 8tvv:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    872526 8tvw:A (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872527 8tvw:A (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    872528 8tvw:A (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872529 8tvw:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872530 8tvw:A (3.6) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    872531 8tvw:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872532 8tvw:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    872533 8tvw:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    872534 8tvw:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38194460
    872535 8tvw:E (3.6) BS01 dna ? GO:0000428 ... P20434 38194460
    872536 8tvw:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38194460
    872537 8tvw:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38194460
    872538 8tvw:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38194460
    872539 8tvw:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38194460
    872540 8tvx:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872541 8tvx:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    872542 8tvx:A (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872543 8tvx:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872544 8tvx:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    872545 8tvx:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872546 8tvx:B (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    872547 8tvx:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    872548 8tvx:C (3.7) BS01 ZN ? GO:0000428 ... P16370 38194460
    872549 8tvx:E (3.7) BS01 dna ? GO:0000428 ... P20434 38194460
    872550 8tvx:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    872551 8tvx:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    872552 8tvx:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    872553 8tvy:A (3.1) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    872554 8tvy:A (3.1) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    872555 8tvy:A (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    872556 8tvy:A (3.1) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    872557 8tvy:B (3.1) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872558 8tvy:B (3.1) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    872559 8tvy:B (3.1) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    872560 8tvy:B (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    872561 8tvy:C (3.1) BS01 ZN ? GO:0000428 ... P16370 38194460
    872562 8tvy:E (3.1) BS01 dna ? GO:0000428 ... P20434 38194460
    872563 8tvy:I (3.1) BS01 ZN ? GO:0000428 ... P27999 38194460
    872564 8tvy:I (3.1) BS02 ZN ? GO:0000428 ... P27999 38194460
    872565 8tvy:M (3.1) BS01 dna 3.6.4.12 GO:0000785 ... P40352 38194460
    872566 8tvy:M (3.1) BS02 dna 3.6.4.12 GO:0000785 ... P40352 38194460
    872567 8tw0:A (1.53) BS01 peptide N/A N/A N/A 39009792
    872568 8tw0:C (1.53) BS01 peptide N/A N/A N/A 39009792
    872569 8tw7:2 (3.8) BS01 AGS N/A N/A P40348 N/A
    872570 8tw7:2 (3.8) BS02 MG N/A N/A P40348 N/A
    872571 8tw7:3 (3.8) BS01 AGS N/A N/A P38629 N/A
    872572 8tw7:3 (3.8) BS02 MG N/A N/A P38629 N/A
    872573 8tw7:4 (3.8) BS01 AGS N/A N/A P40339 N/A
    872574 8tw7:5 (3.8) BS01 ADP N/A N/A P38251 N/A
    872575 8tw8:2 (3.5) BS01 AGS N/A N/A P40348 N/A
    872576 8tw8:2 (3.5) BS02 MG N/A N/A P40348 N/A
    872577 8tw8:3 (3.5) BS01 AGS N/A N/A P38629 N/A
    872578 8tw8:3 (3.5) BS02 MG N/A N/A P38629 N/A
    872579 8tw8:4 (3.5) BS01 AGS N/A N/A P40339 N/A
    872580 8tw8:5 (3.5) BS01 AGS N/A N/A P38251 N/A
    872581 8tw8:5 (3.5) BS02 ADP N/A N/A P38251 N/A
    872582 8tw9:B (3.6) BS01 peptide N/A N/A P25559 N/A
    872583 8tw9:D (3.6) BS01 peptide N/A N/A P38877 N/A
    872584 8tw9:E (3.6) BS01 peptide N/A N/A P21951 N/A
    872585 8tw9:E (3.6) BS02 dna N/A N/A P21951 N/A
    872586 8tw9:E (3.6) BS03 dna N/A N/A P21951 N/A
    872587 8tw9:E (3.6) BS04 SF4 N/A N/A P21951 N/A
    872588 8twa:2 (4.1) BS01 AGS N/A N/A P40348 N/A
    872589 8twa:2 (4.1) BS02 MG N/A N/A P40348 N/A
    872590 8twa:3 (4.1) BS01 AGS N/A N/A P38629 N/A
    872591 8twa:3 (4.1) BS02 MG N/A N/A P38629 N/A
    872592 8twa:4 (4.1) BS01 AGS N/A N/A P40339 N/A
    872593 8twa:5 (4.1) BS01 AGS N/A N/A P38251 N/A
    872594 8twa:5 (4.1) BS02 ADP N/A N/A P38251 N/A
    872595 8twa:B (4.1) BS01 peptide N/A N/A P25559 N/A
    872596 8twa:D (4.1) BS01 peptide N/A N/A P38877 N/A
    872597 8twa:E (4.1) BS01 peptide N/A N/A P21951 N/A
    872598 8twa:E (4.1) BS02 dna N/A N/A P21951 N/A
    872599 8twa:E (4.1) BS03 dna N/A N/A P21951 N/A
    872600 8twa:E (4.1) BS04 SF4 N/A N/A P21951 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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