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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    872201 8trg:B (2.93) BS01 dna ? GO:0000725 ... P0A7G6 38755298
    872202 8trg:B (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    872203 8trg:B (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    872204 8trg:C (2.93) BS01 dna ? GO:0000725 ... P0A7G6 38755298
    872205 8trg:C (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    872206 8trg:C (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    872207 8trg:D (2.93) BS01 dna ? GO:0000725 ... P0A7G6 38755298
    872208 8trg:D (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    872209 8trg:D (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    872210 8trg:E (2.93) BS01 dna ? GO:0000725 ... P0A7G6 38755298
    872211 8trg:E (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    872212 8trg:E (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    872213 8trg:F (2.93) BS01 dna ? GO:0000725 ... P0A7G6 38755298
    872214 8trg:F (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    872215 8trg:F (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    872216 8trg:G (2.93) BS01 dna ? GO:0000725 ... P0A7G6 38755298
    872217 8trg:G (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    872218 8trg:G (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    872219 8trg:H (2.93) BS01 dna ? GO:0000725 ... P0A7G6 38755298
    872220 8trg:H (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    872221 8tri:A (3.716) BS01 CA N/A N/A Q99PF4 N/A
    872222 8tri:A (3.716) BS02 CA N/A N/A Q99PF4 N/A
    872223 8tri:A (3.716) BS03 CA N/A N/A Q99PF4 N/A
    872224 8tri:A (3.716) BS04 CA N/A N/A Q99PF4 N/A
    872225 8tri:A (3.716) BS05 CA N/A N/A Q99PF4 N/A
    872226 8tri:A (3.716) BS06 CA N/A N/A Q99PF4 N/A
    872227 8tri:B (3.716) BS01 CA N/A N/A Q99PF4 N/A
    872228 8tri:B (3.716) BS02 CA N/A N/A Q99PF4 N/A
    872229 8tri:B (3.716) BS03 CA N/A N/A Q99PF4 N/A
    872230 8tri:B (3.716) BS04 CA N/A N/A Q99PF4 N/A
    872231 8tri:B (3.716) BS05 CA N/A N/A Q99PF4 N/A
    872232 8tri:B (3.716) BS06 CA N/A N/A Q99PF4 N/A
    872233 8tri:C (3.716) BS01 CA N/A N/A Q99PF4 N/A
    872234 8tri:C (3.716) BS02 CA N/A N/A Q99PF4 N/A
    872235 8tri:C (3.716) BS03 CA N/A N/A Q99PF4 N/A
    872236 8tri:C (3.716) BS04 CA N/A N/A Q99PF4 N/A
    872237 8tri:C (3.716) BS05 CA N/A N/A Q99PF4 N/A
    872238 8tri:C (3.716) BS06 CA N/A N/A Q99PF4 N/A
    872239 8trj:A (2.78) BS01 KD9 N/A N/A Q64663 39107314
    872240 8trj:A (2.78) BS02 GDP N/A N/A Q64663 39107314
    872241 8trj:A (2.78) BS03 ZN N/A N/A Q64663 39107314
    872242 8trj:A (2.78) BS04 ZN N/A N/A Q64663 39107314
    872243 8trj:A (2.78) BS05 KD9 N/A N/A Q64663 39107314
    872244 8trj:B (2.78) BS01 KD9 N/A N/A Q64663 39107314
    872245 8trj:B (2.78) BS02 GDP N/A N/A Q64663 39107314
    872246 8trj:B (2.78) BS03 ZN N/A N/A Q64663 39107314
    872247 8trj:B (2.78) BS04 ZN N/A N/A Q64663 39107314
    872248 8trj:B (2.78) BS05 KD9 N/A N/A Q64663 39107314
    872249 8trj:C (2.78) BS01 KD9 N/A N/A Q64663 39107314
    872250 8trj:C (2.78) BS02 KD9 N/A N/A Q64663 39107314
    872251 8trj:C (2.78) BS03 GDP N/A N/A Q64663 39107314
    872252 8trj:C (2.78) BS04 ZN N/A N/A Q64663 39107314
    872253 8trj:C (2.78) BS05 ZN N/A N/A Q64663 39107314
    872254 8trl:A (2.4) BS01 peptide N/A N/A P01903 39043656
    872255 8trl:B (2.4) BS01 peptide N/A N/A P01911 39043656
    872256 8trl:D (2.4) BS01 peptide N/A N/A P01903 39043656
    872257 8trl:E (2.4) BS01 peptide N/A N/A P01911 39043656
    872258 8trl:G (2.4) BS01 peptide N/A N/A N/A 39043656
    872259 8trl:H (2.4) BS01 peptide N/A N/A N/A 39043656
    872260 8trl:I (2.4) BS01 peptide N/A N/A N/A 39043656
    872261 8trl:J (2.4) BS01 peptide N/A N/A N/A 39043656
    872262 8trm:A (2.5) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    872263 8trm:B (2.5) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    872264 8trm:C (2.5) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    872265 8trn:A (3.0) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    872266 8trn:A (3.0) BS02 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    872267 8trn:A (3.0) BS03 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    872268 8trn:B (3.0) BS01 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    872269 8trn:B (3.0) BS02 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    872270 8trn:B (3.0) BS03 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    872271 8trn:C (3.0) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    872272 8trn:C (3.0) BS02 9UE 3.6.4.- GO:0005524 ... P53476 38418447
    872273 8trq:A (2.75) BS01 peptide N/A N/A P01903 39043656
    872274 8trq:B (2.75) BS01 peptide N/A N/A P01911 39043656
    872275 8trq:D (2.75) BS01 peptide N/A N/A N/A 39043656
    872276 8trq:E (2.75) BS01 peptide N/A N/A N/A 39043656
    872277 8trr:A (2.65) BS01 peptide N/A N/A P01903 39043656
    872278 8trr:B (2.65) BS01 peptide N/A N/A P01911 39043656
    872279 8trr:D (2.65) BS01 peptide N/A N/A N/A 39043656
    872280 8trr:E (2.65) BS01 peptide N/A N/A N/A 39043656
    872281 8trr:F (2.65) BS01 peptide N/A N/A P01903 39043656
    872282 8trr:G (2.65) BS01 peptide N/A N/A P01911 39043656
    872283 8trr:I (2.65) BS01 peptide N/A N/A N/A 39043656
    872284 8trr:J (2.65) BS01 peptide N/A N/A N/A 39043656
    872285 8tru:A (1.9) BS01 ZN N/A N/A C9RKY6 39153129
    872286 8tru:A (1.9) BS02 ZN N/A N/A C9RKY6 39153129
    872287 8try:A (2.35) BS01 QU0 2.3.1.- GO:0009058 ... I6X8D2 38577994
    872288 8try:A (2.35) BS02 QU0 2.3.1.- GO:0009058 ... I6X8D2 38577994
    872289 8try:B (2.35) BS01 QU0 2.3.1.- GO:0009058 ... I6X8D2 38577994
    872290 8try:B (2.35) BS02 QU0 2.3.1.- GO:0009058 ... I6X8D2 38577994
    872291 8ts0:A (1.7) BS01 CA N/A N/A P07306 38847394
    872292 8ts0:A (1.7) BS02 CA N/A N/A P07306 38847394
    872293 8ts0:A (1.7) BS03 CA N/A N/A P07306 38847394
    872294 8ts4:A (2.2) BS01 KFF 2.4.2.8 GO:0000166 ... Q07010 38651522
    872295 8ts4:B (2.2) BS01 KFF 2.4.2.8 GO:0000166 ... Q07010 38651522
    872296 8ts9:A (2.83) BS01 UE9 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    872297 8tsa:A (2.51) BS01 UIW 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    872298 8tsb:A (3.53) BS01 UIW 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    872299 8tsc:A (3.62) BS01 UJC 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    872300 8tsd:A (2.7) BS01 XUZ 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37916956
    872301 8tsh:A (3.1) BS01 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    872302 8tsh:A (3.1) BS02 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    872303 8tsh:B (3.1) BS01 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    872304 8tsh:B (3.1) BS02 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    872305 8tsi:A (4.4) BS01 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    872306 8tsi:A (4.4) BS02 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    872307 8tsi:A (4.4) BS03 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    872308 8tsi:A (4.4) BS04 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    872309 8tsi:B (4.4) BS01 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    872310 8tsi:B (4.4) BS02 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    872311 8tsi:B (4.4) BS03 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    872312 8tsi:B (4.4) BS04 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    872313 8tsn:A () BS01 QCV N/A N/A N/A N/A
    872314 8tso:A (2.68) BS01 KDL N/A GO:0005524 ... P60752 N/A
    872315 8tso:A (2.68) BS02 KDL N/A GO:0005524 ... P60752 N/A
    872316 8tso:B (2.68) BS01 KDL N/A GO:0005524 ... P60752 N/A
    872317 8tso:B (2.68) BS02 KDL N/A GO:0005524 ... P60752 N/A
    872318 8tt3:C (3.4) BS01 KJ9 ? GO:0005886 ... A0A2S5T447 38570679
    872319 8tt3:D (3.4) BS01 KJ9 ? GO:0005886 ... A0A2S5T447 38570679
    872320 8tt9:A (1.68) BS01 ENO N/A N/A P14174 N/A
    872321 8tt9:A (1.68) BS02 ENO N/A N/A P14174 N/A
    872322 8tt9:B (1.68) BS01 ENO N/A N/A P14174 N/A
    872323 8tt9:B (1.68) BS02 ENO N/A N/A P14174 N/A
    872324 8tt9:C (1.68) BS01 ENO N/A N/A P14174 N/A
    872325 8tt9:C (1.68) BS02 ENO N/A N/A P14174 N/A
    872326 8tta:A (3.46) BS01 peptide N/A N/A Q9QZ88 39116126
    872327 8tta:C (3.46) BS01 peptide N/A N/A Q9QZ88 39116126
    872328 8ttb:C (2.77) BS01 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    872329 8ttb:C (2.77) BS02 ZN 3.1.3.16 GO:0000159 ... P67775 38123684
    872330 8ttc:D (3.01) BS01 peptide N/A N/A Q9EQH3 39116126
    872331 8ttd:A (2.011) BS01 peptide N/A N/A Q9QZ88 39116126
    872332 8tte:A (3.26) BS01 peptide ? GO:0005886 ... P0A0J7 38802368
    872333 8ttg:A (3.35) BS01 peptide ? GO:0005886 ... P0A0J7 38802368
    872334 8tti:A (1.98) BS01 TRP ? GO:0000166 ... M9QSI0 37662313
    872335 8tti:B (1.98) BS01 TRP ? GO:0000166 ... M9QSI0 37662313
    872336 8tti:C (1.98) BS01 FAD ? GO:0000166 ... M9QSI0 37662313
    872337 8tti:D (1.98) BS01 FAD ? GO:0000166 ... M9QSI0 37662313
    872338 8ttj:A (1.98) BS01 6CW ? GO:0000166 ... M9QSI0 37662313
    872339 8ttj:B (1.98) BS01 6CW ? GO:0000166 ... M9QSI0 37662313
    872340 8ttj:C (1.98) BS01 6CW ? GO:0000166 ... M9QSI0 37662313
    872341 8ttj:D (1.98) BS01 6CW ? GO:0000166 ... M9QSI0 37662313
    872342 8ttl:A (2.6) BS01 peptide N/A N/A P10636 38408247
    872343 8ttl:B (2.6) BS01 peptide N/A N/A P10636 38408247
    872344 8ttl:C (2.6) BS01 peptide N/A N/A P10636 38408247
    872345 8ttm:A (2.51) BS01 FUC N/A N/A P0DOX5 38598628
    872346 8ttm:B (2.51) BS01 BMA N/A N/A P0DOX5 38598628
    872347 8ttp:A (1.43) BS01 NXL 3.5.2.6 GO:0008800 ... A0A377KDY3 N/A
    872348 8ttp:B (1.43) BS01 NXL 3.5.2.6 GO:0008800 ... A0A377KDY3 N/A
    872349 8ttt:A (2.35) BS01 peptide N/A N/A Q96L92 39116126
    872350 8ttu:A (2.36) BS01 peptide N/A N/A Q96L92 39116126
    872351 8ttv:A (2.0) BS01 peptide N/A N/A Q96L92 39116126
    872352 8ttw:A (2.96) BS01 83J ? GO:0019031 ... Q2N0S6 37872202
    872353 8ttw:C (2.96) BS01 BMA N/A N/A N/A 37872202
    872354 8ttw:C (2.96) BS02 MAN N/A N/A N/A 37872202
    872355 8ttw:C (2.96) BS03 MAN N/A N/A N/A 37872202
    872356 8ttw:C (2.96) BS04 MAN N/A N/A N/A 37872202
    872357 8ttw:E (2.96) BS01 MAN ? GO:0019031 ... Q2N0S6 37872202
    872358 8ttw:E (2.96) BS02 83J ? GO:0019031 ... Q2N0S6 37872202
    872359 8ttw:G (2.96) BS01 BMA N/A N/A N/A 37872202
    872360 8ttw:G (2.96) BS02 MAN N/A N/A N/A 37872202
    872361 8ttw:G (2.96) BS03 MAN N/A N/A N/A 37872202
    872362 8ttw:G (2.96) BS04 MAN N/A N/A N/A 37872202
    872363 8ttw:I (2.96) BS01 MAN ? GO:0019031 ... Q2N0S6 37872202
    872364 8ttw:I (2.96) BS02 83J ? GO:0019031 ... Q2N0S6 37872202
    872365 8ttw:K (2.96) BS01 BMA N/A N/A N/A 37872202
    872366 8ttw:K (2.96) BS02 MAN N/A N/A N/A 37872202
    872367 8ttw:K (2.96) BS03 MAN N/A N/A N/A 37872202
    872368 8ttw:K (2.96) BS04 MAN N/A N/A N/A 37872202
    872369 8ttw:N (2.96) BS01 MAN N/A N/A N/A 37872202
    872370 8ttw:N (2.96) BS02 MAN N/A N/A N/A 37872202
    872371 8ttw:P (2.96) BS01 MAN N/A N/A N/A 37872202
    872372 8ttw:R (2.96) BS01 MAN N/A N/A N/A 37872202
    872373 8ttw:R (2.96) BS02 MAN N/A N/A N/A 37872202
    872374 8tty:A (2.101) BS01 QEC ? GO:0002224 ... B3Y653 38352830
    872375 8tty:A (2.101) BS02 QEC ? GO:0002224 ... B3Y653 38352830
    872376 8tty:B (2.101) BS01 QEC ? GO:0002224 ... B3Y653 38352830
    872377 8tty:B (2.101) BS02 QEC ? GO:0002224 ... B3Y653 38352830
    872378 8ttz:A (3.14) BS01 QCX ? GO:0002224 ... B3Y653 38352830
    872379 8ttz:A (3.14) BS02 QCX ? GO:0002224 ... B3Y653 38352830
    872380 8ttz:B (3.14) BS01 QCX ? GO:0002224 ... B3Y653 38352830
    872381 8ttz:B (3.14) BS02 QCX ? GO:0002224 ... B3Y653 38352830
    872382 8tu3:A (1.7) BS01 UEO N/A N/A Q06187 38712838
    872383 8tu4:A (1.6) BS01 V72 N/A N/A Q06187 38712838
    872384 8tu5:A (2.1) BS01 V7I N/A N/A Q06187 38712838
    872385 8tu9:A (3.26) BS01 ACO 2.3.1.78 GO:0003674 ... P42212
    Q68CP4    		 39196614
    872386 8tu9:B (3.26) BS01 ACO 2.3.1.78 GO:0003674 ... P42212
    Q68CP4    		 39196614
    872387 8tua:A (4.1) BS01 4IP ? GO:0005085 ... Q8TCU6 N/A
    872388 8tub:C (2.4) BS01 peptide ? N/A P01889 38684663
    872389 8tub:F (2.4) BS01 peptide ? N/A P01889 38684663
    872390 8tub:F (2.4) BS02 peptide ? N/A P01889 38684663
    872391 8tub:G (2.4) BS01 peptide ? N/A P01889 38684663
    872392 8tub:J (2.4) BS01 peptide ? N/A P01889 38684663
    872393 8tub:J (2.4) BS02 peptide ? N/A P01889 38684663
    872394 8tuc:A (1.5) BS01 O7I 2.7.11.17 GO:0004672 ... Q96RR4 38009718
    872395 8tud:B (3.0) BS01 BMA N/A N/A P0DOX5 38598628
    872396 8tue:A (2.1) BS01 ZN N/A N/A P09528 N/A
    872397 8tue:B (2.1) BS01 ZN N/A N/A P09528 N/A
    872398 8tue:C (2.1) BS01 ZN N/A N/A P09528 N/A
    872399 8tue:E (2.1) BS01 ZN N/A N/A P09528 N/A
    872400 8tue:F (2.1) BS01 ZN N/A N/A P09528 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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