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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    872001 8tpu:A7 (4.1) BS01 rna N/A N/A Q8I463 N/A
    872002 8tpu:A8 (4.1) BS01 rna N/A N/A N/A N/A
    872003 8tpu:A9 (4.1) BS01 rna N/A N/A N/A N/A
    872004 8tpu:AD (4.1) BS01 rna N/A N/A Q8I3T9 N/A
    872005 8tpu:AE (4.1) BS01 rna N/A N/A Q8IJC6 N/A
    872006 8tpu:AF (4.1) BS01 rna N/A N/A Q8I431 N/A
    872007 8tpu:AG (4.1) BS01 rna N/A N/A Q8IBQ6 N/A
    872008 8tpu:AG (4.1) BS02 rna N/A N/A Q8IBQ6 N/A
    872009 8tpu:AH (4.1) BS01 rna N/A N/A Q8IE85 N/A
    872010 8tpu:AI (4.1) BS01 rna N/A N/A A0A5K1K8V8 N/A
    872011 8tpu:AJ (4.1) BS01 rna N/A N/A Q8ILL2 N/A
    872012 8tpu:AK (4.1) BS01 rna N/A N/A Q8IJZ7 N/A
    872013 8tpu:AL (4.1) BS01 rna N/A N/A Q8IAX6 N/A
    872014 8tpu:AL (4.1) BS02 rna N/A N/A Q8IAX6 N/A
    872015 8tpu:AM (4.1) BS01 rna N/A N/A Q8IE09 N/A
    872016 8tpu:AM (4.1) BS02 rna N/A N/A Q8IE09 N/A
    872017 8tpu:AN (4.1) BS01 rna N/A N/A Q8ILE8 N/A
    872018 8tpu:AO (4.1) BS01 rna N/A N/A C6KT23 N/A
    872019 8tpu:AP (4.1) BS01 rna N/A N/A N/A N/A
    872020 8tpu:AP (4.1) BS02 rna N/A N/A N/A N/A
    872021 8tpu:AQ (4.1) BS01 rna N/A N/A Q8ILV2 N/A
    872022 8tpu:AQ (4.1) BS02 rna N/A N/A Q8ILV2 N/A
    872023 8tpu:AR (4.1) BS01 rna N/A N/A Q8ILL3 N/A
    872024 8tpu:AR (4.1) BS02 rna N/A N/A Q8ILL3 N/A
    872025 8tpu:AS (4.1) BS01 rna N/A N/A C0H5G3 N/A
    872026 8tpu:AT (4.1) BS01 rna N/A N/A C6KSY6 N/A
    872027 8tpu:AT (4.1) BS02 rna N/A N/A C6KSY6 N/A
    872028 8tpu:AU (4.1) BS01 rna N/A N/A Q8IDS6 N/A
    872029 8tpu:AU (4.1) BS02 rna N/A N/A Q8IDS6 N/A
    872030 8tpu:AV (4.1) BS01 rna N/A N/A N/A N/A
    872031 8tpu:AW (4.1) BS01 rna N/A N/A N/A N/A
    872032 8tpu:AW (4.1) BS02 rna N/A N/A N/A N/A
    872033 8tpu:AX (4.1) BS01 rna N/A N/A Q8IB51 N/A
    872034 8tpu:AY (4.1) BS01 rna N/A N/A Q8IE82 N/A
    872035 8tpu:AY (4.1) BS02 rna N/A N/A Q8IE82 N/A
    872036 8tpu:AZ (4.1) BS01 rna N/A N/A O77364 N/A
    872037 8tpu:AZ (4.1) BS02 rna N/A N/A O77364 N/A
    872038 8tpu:Aa (4.1) BS01 rna N/A N/A N/A N/A
    872039 8tpu:Ab (4.1) BS01 rna N/A N/A Q8I713 N/A
    872040 8tpu:Ac (4.1) BS01 rna N/A N/A C0H4L5 N/A
    872041 8tpu:Ac (4.1) BS02 rna N/A N/A C0H4L5 N/A
    872042 8tpu:Ad (4.1) BS01 rna N/A N/A Q8II62 N/A
    872043 8tpu:Ae (4.1) BS01 rna N/A N/A C0H4H3 N/A
    872044 8tpu:Ae (4.1) BS02 rna N/A N/A C0H4H3 N/A
    872045 8tpu:Af (4.1) BS01 rna N/A N/A Q8ID50 N/A
    872046 8tpu:Ag (4.1) BS01 rna N/A N/A C6S3G4 N/A
    872047 8tpu:Ag (4.1) BS02 rna N/A N/A C6S3G4 N/A
    872048 8tpu:Ah (4.1) BS01 rna N/A N/A N/A N/A
    872049 8tpu:Ai (4.1) BS01 rna N/A N/A N/A N/A
    872050 8tpu:Ai (4.1) BS02 rna N/A N/A N/A N/A
    872051 8tpu:S1 (4.1) BS01 rna N/A N/A Q8I3R6 N/A
    872052 8tpu:S2 (4.1) BS01 rna N/A N/A Q8ILN8 N/A
    872053 8tpu:S3 (4.1) BS01 rna N/A N/A O96258 N/A
    872054 8tpu:S4 (4.1) BS01 rna N/A N/A Q8IEN2 N/A
    872055 8tpu:S5 (4.1) BS01 rna N/A N/A N/A N/A
    872056 8tpu:S6 (4.1) BS01 rna N/A N/A O96269 N/A
    872057 8tpu:S8 (4.1) BS01 rna N/A N/A Q8IBA0 N/A
    872058 8tpu:SB (4.1) BS01 rna N/A N/A O97313 N/A
    872059 8tpu:SC (4.1) BS01 rna N/A N/A Q8IJD4 N/A
    872060 8tpu:SD (4.1) BS01 rna N/A N/A Q8IKH8 N/A
    872061 8tpu:SE (4.1) BS01 rna N/A N/A Q8I3R0 N/A
    872062 8tpu:SF (4.1) BS01 rna N/A N/A Q8IIU8 N/A
    872063 8tpu:SG (4.1) BS01 rna N/A N/A Q8IL02 N/A
    872064 8tpu:SH (4.1) BS01 rna N/A N/A Q8IDR9 N/A
    872065 8tpu:SI (4.1) BS01 rna N/A N/A Q8IBN5 N/A
    872066 8tpu:SJ (4.1) BS01 rna N/A N/A Q8IET7 N/A
    872067 8tpu:SK (4.1) BS01 rna N/A N/A O77395 N/A
    872068 8tpu:SL (4.1) BS01 rna N/A N/A Q8IM10 N/A
    872069 8tpu:SL (4.1) BS02 rna N/A N/A Q8IM10 N/A
    872070 8tpu:SM (4.1) BS01 rna N/A N/A A0A0L7M7C8 N/A
    872071 8tpu:SN (4.1) BS01 rna N/A N/A Q8IK02 N/A
    872072 8tpu:SO (4.1) BS01 rna N/A N/A Q8IBQ5 N/A
    872073 8tpu:SP (4.1) BS01 rna N/A N/A A0A5K1K925 N/A
    872074 8tpu:SQ (4.1) BS01 rna N/A N/A O97248 N/A
    872075 8tpu:SS (4.1) BS01 rna N/A N/A Q8IIA2 N/A
    872076 8tpu:ST (4.1) BS01 rna N/A N/A C0H4K8 N/A
    872077 8tpu:SU (4.1) BS01 rna N/A N/A Q8IDB0 N/A
    872078 8tpu:SV (4.1) BS01 rna N/A N/A O77381 N/A
    872079 8tpu:SW (4.1) BS01 rna N/A N/A Q8I502 N/A
    872080 8tpu:SX (4.1) BS01 rna N/A N/A C0H5C2 N/A
    872081 8tpu:SY (4.1) BS01 rna N/A N/A Q8IFP2 N/A
    872082 8tpu:SZ (4.1) BS01 rna N/A N/A Q8IHS5 N/A
    872083 8tpv:A (2.27) BS01 JEI 2.4.2.8 GO:0000166 ... P00492 38651522
    872084 8tpv:A (2.27) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    872085 8tpv:B (2.27) BS01 JEI 2.4.2.8 GO:0000166 ... P00492 38651522
    872086 8tpv:B (2.27) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    872087 8tpv:C (2.27) BS01 JEI 2.4.2.8 GO:0000166 ... P00492 38651522
    872088 8tpv:C (2.27) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    872089 8tpv:D (2.27) BS01 JEI 2.4.2.8 GO:0000166 ... P00492 38651522
    872090 8tpv:D (2.27) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    872091 8tpy:A (2.5) BS01 JG6 2.4.2.8 GO:0000166 ... P00492 38651522
    872092 8tpy:A (2.5) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    872093 8tpy:B (2.5) BS01 JG6 2.4.2.8 GO:0000166 ... P00492 38651522
    872094 8tpy:B (2.5) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    872095 8tpy:C (2.5) BS01 JG6 2.4.2.8 GO:0000166 ... P00492 38651522
    872096 8tpy:C (2.5) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    872097 8tpy:D (2.5) BS01 JG6 2.4.2.8 GO:0000166 ... P00492 38651522
    872098 8tpy:D (2.5) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    872099 8tq0:A (2.4) BS01 RED ? N/A F8W4B7 37703993
    872100 8tq0:A (2.4) BS02 ZN ? N/A F8W4B7 37703993
    872101 8tq0:B (2.4) BS01 RED ? N/A F8W4B7 37703993
    872102 8tq0:B (2.4) BS02 ZN ? N/A F8W4B7 37703993
    872103 8tq1:H (3.3) BS01 MAN N/A N/A N/A N/A
    872104 8tq7:A (2.8) BS01 peptide ? N/A P01900 38456672
    872105 8tq7:C (2.8) BS01 peptide ? N/A P01900 38456672
    872106 8tq8:A (2.69) BS01 peptide ? N/A P01900 38456672
    872107 8tq8:C (2.69) BS01 peptide ? N/A P01900 38456672
    872108 8tq9:A (2.9) BS01 peptide ? N/A P01900 38456672
    872109 8tqa:A (2.6) BS01 peptide ? N/A P01899 38456672
    872110 8tqb:A (3.3) BS01 W92 N/A N/A P31422 37645747
    872111 8tqb:A (3.3) BS02 CA N/A N/A P31422 37645747
    872112 8tqb:A (3.3) BS03 CA N/A N/A P31422 37645747
    872113 8tqb:B (3.3) BS01 W92 N/A N/A P31422 37645747
    872114 8tqb:B (3.3) BS02 CA N/A N/A P31422 37645747
    872115 8tqb:B (3.3) BS03 CA N/A N/A P31422 37645747
    872116 8tqd:A (2.02) BS01 JMR ? GO:0003677 ... P19838 38653237
    872117 8tqf:A (1.69) BS01 PLG N/A N/A A0A0R0IK90 N/A
    872118 8tqf:A (1.69) BS02 S8R N/A N/A A0A0R0IK90 N/A
    872119 8tqf:A (1.69) BS03 PLG N/A N/A A0A0R0IK90 N/A
    872120 8tqf:A (1.69) BS04 S8R N/A N/A A0A0R0IK90 N/A
    872121 8tqf:B (1.69) BS01 PLG N/A N/A A0A0R0IK90 N/A
    872122 8tqf:B (1.69) BS02 S8R N/A N/A A0A0R0IK90 N/A
    872123 8tqf:B (1.69) BS03 PLG N/A N/A A0A0R0IK90 N/A
    872124 8tqf:B (1.69) BS04 S8R N/A N/A A0A0R0IK90 N/A
    872125 8tqf:C (1.69) BS01 PLG N/A N/A A0A0R0IK90 N/A
    872126 8tqf:C (1.69) BS02 S8R N/A N/A A0A0R0IK90 N/A
    872127 8tqf:C (1.69) BS03 PLG N/A N/A A0A0R0IK90 N/A
    872128 8tqf:C (1.69) BS04 S8R N/A N/A A0A0R0IK90 N/A
    872129 8tqf:D (1.69) BS01 PLG N/A N/A A0A0R0IK90 N/A
    872130 8tqf:D (1.69) BS02 S8R N/A N/A A0A0R0IK90 N/A
    872131 8tqf:D (1.69) BS03 PLG N/A N/A A0A0R0IK90 N/A
    872132 8tqf:D (1.69) BS04 S8R N/A N/A A0A0R0IK90 N/A
    872133 8tqg:A (2.2) BS01 JR0 2.3.1.- GO:0009058 ... I6X8D2 38577994
    872134 8tqh:A (1.85) BS01 JX6 N/A N/A P0DTD1 N/A
    872135 8tqj:A (1.85) BS01 YHI N/A N/A P0DTD1 N/A
    872136 8tql:A (1.9) BS01 JY0 N/A N/A P0DTD1 N/A
    872137 8tqm:A (3.2) BS01 Y01 2.3.2.27 GO:0000837 ... P40318 38467638
    872138 8tqm:A (3.2) BS02 ERG 2.3.2.27 GO:0000837 ... P40318 38467638
    872139 8tqp:A (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872140 8tqp:A (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872141 8tqp:B (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872142 8tqp:B (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872143 8tqp:C (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872144 8tqp:C (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872145 8tqp:D (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872146 8tqp:D (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872147 8tqp:E (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872148 8tqp:E (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872149 8tqp:F (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872150 8tqp:F (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872151 8tqp:G (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872152 8tqp:G (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872153 8tqp:H (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872154 8tqp:H (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872155 8tqp:I (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872156 8tqp:I (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872157 8tqp:J (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872158 8tqp:J (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872159 8tqp:K (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872160 8tqp:K (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872161 8tqp:L (2.9) BS01 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872162 8tqp:L (2.9) BS02 K3L 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0016032 ... P12497 38054267
    872163 8tqs:H (2.207) BS01 dna 3.4.21.5 GO:0004252 ... P00734 38730234
    872164 8tqs:H (2.207) BS02 4CC 3.4.21.5 GO:0004252 ... P00734 38730234
    872165 8tqt:A (1.65) BS01 K2X N/A N/A P0DTD1 N/A
    872166 8tqu:A (1.85) BS01 peptide N/A N/A P0DTD1 N/A
    872167 8tqv:A (2.0) BS01 JS9 2.3.1.- GO:0009058 ... I6X8D2 38577994
    872168 8tqv:B (2.0) BS01 JS9 2.3.1.- GO:0009058 ... I6X8D2 38577994
    872169 8tr0:A (3.2) BS01 Z99 N/A N/A P31422 37645747
    872170 8tr0:B (3.2) BS01 Z99 N/A N/A P31422 37645747
    872171 8tr1:A (2.46) BS01 JEI 2.4.2.8 GO:0000166 ... Q07010 38651522
    872172 8tr1:B (2.46) BS01 JEI 2.4.2.8 GO:0000166 ... Q07010 38651522
    872173 8tr1:C (2.46) BS01 JEI 2.4.2.8 GO:0000166 ... Q07010 38651522
    872174 8tr1:D (2.46) BS01 JEI 2.4.2.8 GO:0000166 ... Q07010 38651522
    872175 8tr2:A (3.5) BS01 JIX N/A N/A P31422 37645747
    872176 8tr2:A (3.5) BS02 CA N/A N/A P31422 37645747
    872177 8tr2:A (3.5) BS03 CA N/A N/A P31422 37645747
    872178 8tr2:B (3.5) BS01 JIX N/A N/A P31422 37645747
    872179 8tr2:B (3.5) BS02 CA N/A N/A P31422 37645747
    872180 8tr2:B (3.5) BS03 CA N/A N/A P31422 37645747
    872181 8tr4:A (2.1) BS01 K6C 2.3.1.- GO:0009058 ... I6X8D2 38577994
    872182 8tr4:B (2.1) BS01 K6C 2.3.1.- GO:0009058 ... I6X8D2 38577994
    872183 8tr5:A (2.53) BS01 GDP N/A N/A Q64663 39107314
    872184 8tr5:A (2.53) BS02 ZN N/A N/A Q64663 39107314
    872185 8tr5:A (2.53) BS03 ZN N/A N/A Q64663 39107314
    872186 8tr5:B (2.53) BS01 GDP N/A N/A Q64663 39107314
    872187 8tr5:B (2.53) BS02 ZN N/A N/A Q64663 39107314
    872188 8tr5:B (2.53) BS03 ZN N/A N/A Q64663 39107314
    872189 8tr5:C (2.53) BS01 GDP N/A N/A Q64663 39107314
    872190 8tr5:C (2.53) BS02 ZN N/A N/A Q64663 39107314
    872191 8tr5:C (2.53) BS03 ZN N/A N/A Q64663 39107314
    872192 8tr9:A (3.2) BS01 GDP N/A GO:0000785 ... P21980 N/A
    872193 8trc:A (3.3) BS01 Z99 N/A N/A P31422 37645747
    872194 8trc:B (3.3) BS01 Z99 N/A N/A P31422 37645747
    872195 8trd:A (3.4) BS01 Z99 N/A N/A P31422 39090128
    872196 8trd:B (3.4) BS01 Z99 N/A N/A P31422 39090128
    872197 8tre:A () BS01 ATP 2.3.2.26 N/A N/A N/A
    872198 8trg:A (2.93) BS01 dna ? GO:0000725 ... P0A7G6 38755298
    872199 8trg:A (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    872200 8trg:A (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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