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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    871401 8tlo:A (2.76) BS02 dna N/A N/A Q9H165 N/A
    871402 8tlo:A (2.76) BS03 ZN N/A N/A Q9H165 N/A
    871403 8tlo:A (2.76) BS04 ZN N/A N/A Q9H165 N/A
    871404 8tlo:A (2.76) BS05 ZN N/A N/A Q9H165 N/A
    871405 8tlq:A (3.53) BS01 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    871406 8tlq:A (3.53) BS02 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    871407 8tlq:A (3.53) BS03 CA 2.7.7.7 GO:0000166 ... P14284 38720088
    871408 8tlq:A (3.53) BS04 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    871409 8tlq:A (3.53) BS05 SF4 2.7.7.7 GO:0000166 ... P14284 38720088
    871410 8tlq:B (3.53) BS01 dna 2.7.7.- GO:0000785 ... P12689 38720088
    871411 8tlq:B (3.53) BS02 dna 2.7.7.- GO:0000785 ... P12689 38720088
    871412 8tlr:A (1.70004) BS01 GDP N/A N/A P01112 39255801
    871413 8tlr:A (1.70004) BS02 MOV N/A N/A P01112 39255801
    871414 8tls:A (1.7) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    871415 8tls:B (1.7) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    871416 8tlt:A (2.85) BS01 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    871417 8tlt:A (2.85) BS02 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    871418 8tlt:A (2.85) BS03 SF4 2.7.7.7 GO:0000166 ... P14284 38720088
    871419 8tlt:A (2.85) BS04 CA 2.7.7.7 GO:0000166 ... P14284 38720088
    871420 8tlt:A (2.85) BS05 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    871421 8tlv:A (2.659) BS01 peptide ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    871422 8tlv:A (2.659) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    871423 8tlv:A (2.659) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    871424 8tlw:A (2.106) BS01 peptide ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    871425 8tlw:A (2.106) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    871426 8tlw:A (2.106) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    871427 8tlx:A (2.097) BS01 peptide ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    871428 8tlx:A (2.097) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    871429 8tlx:A (2.097) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    871430 8tm7:A (1.79) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    871431 8tm7:A (1.79) BS02 I7Q 2.4.2.12 GO:0005125 ... P43490 38352833
    871432 8tm7:A (1.79) BS03 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    871433 8tm7:B (1.79) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    871434 8tm7:B (1.79) BS02 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    871435 8tm7:B (1.79) BS03 I7Q 2.4.2.12 GO:0005125 ... P43490 38352833
    871436 8tmr:A (1.37) BS01 NXL 3.5.2.6 GO:0008800 ... A0A4Y5JTU1 38000656
    871437 8tmt:A (1.7) BS01 4D6 3.5.2.6 GO:0008800 ... A0A4Y5JTU1 38000656
    871438 8tmy:A (3.07) BS01 peptide N/A N/A N/A N/A
    871439 8tmy:B (3.07) BS01 peptide N/A N/A N/A N/A
    871440 8tmy:C (3.07) BS01 peptide N/A N/A N/A N/A
    871441 8tmy:D (3.07) BS01 peptide N/A N/A N/A N/A
    871442 8tmy:H (3.07) BS01 peptide N/A N/A N/A N/A
    871443 8tmy:L (3.07) BS01 peptide N/A N/A N/A N/A
    871444 8tmz:H (1.8) BS01 peptide N/A N/A N/A N/A
    871445 8tmz:L (1.8) BS01 peptide N/A N/A N/A N/A
    871446 8tn3:A (1.63) BS01 PMP ? GO:0008483 ... Q643B9 37890134
    871447 8tn3:B (1.63) BS01 PMP ? GO:0008483 ... Q643B9 37890134
    871448 8tn6:A (1.36) BS01 RPB N/A N/A N/A 38574125
    871449 8tn6:B (1.36) BS01 RPB N/A N/A N/A 38574125
    871450 8tn6:C (1.36) BS01 RPB N/A N/A N/A 38574125
    871451 8tnb:A (1.4) BS01 IQM N/A N/A N/A 38574125
    871452 8tnb:B (1.4) BS01 IQM N/A N/A N/A 38574125
    871453 8tnb:C (1.4) BS01 IQM N/A N/A N/A 38574125
    871454 8tnc:A (1.4) BS01 3JD N/A N/A N/A 38574125
    871455 8tnc:B (1.4) BS01 3JD N/A N/A N/A 38574125
    871456 8tnc:C (1.4) BS01 3JD N/A N/A N/A 38574125
    871457 8tnd:A (1.29) BS01 78P N/A N/A N/A 38574125
    871458 8tnd:B (1.29) BS01 78P N/A N/A N/A 38574125
    871459 8tnd:C (1.29) BS01 78P N/A N/A N/A 38574125
    871460 8tnk:A (1.79) BS01 IRJ ? GO:0004497 ... Q2IU02 37837941
    871461 8tnk:A (1.79) BS02 HEM ? GO:0004497 ... Q2IU02 37837941
    871462 8tnp:B (3.3) BS01 ZN ? GO:0005515 ... Q96SW2 38484051
    871463 8tnp:B (3.3) BS02 Y70 ? GO:0005515 ... Q96SW2 38484051
    871464 8tnp:C (3.3) BS01 Y70 ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    871465 8tnp:C (3.3) BS02 ZN ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    871466 8tnq:B (2.41) BS01 ZN ? GO:0005515 ... Q96SW2 38484051
    871467 8tnq:B (2.41) BS02 MIQ ? GO:0005515 ... Q96SW2 38484051
    871468 8tnq:C (2.41) BS01 MIQ ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    871469 8tnq:C (2.41) BS02 ZN ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    871470 8tnr:B (2.5) BS01 ZN ? GO:0005515 ... Q96SW2 38484051
    871471 8tnr:B (2.5) BS02 MIQ ? GO:0005515 ... Q96SW2 38484051
    871472 8tnr:C (2.5) BS01 MIQ ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    871473 8tnr:C (2.5) BS02 ZN ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    871474 8tnv:A (1.5) BS01 CUO N/A GO:0016491 ... N/A 38513659
    871475 8tnv:B (1.5) BS01 CUO N/A GO:0016491 ... N/A 38513659
    871476 8tny:A (3.55) BS01 SO4 ? GO:0001503 ... P50443 38684689
    871477 8tny:B (3.55) BS01 SO4 ? GO:0001503 ... P50443 38684689
    871478 8to1:I (2.8) BS01 4QM N/A GO:0000345 ... P0A8V2 38951624
    871479 8to1:I (2.8) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    871480 8to1:J (2.8) BS01 dna N/A GO:0000287 ... P0A8T7 38951624
    871481 8to1:J (2.8) BS02 MG N/A GO:0000287 ... P0A8T7 38951624
    871482 8to1:J (2.8) BS03 ZN N/A GO:0000287 ... P0A8T7 38951624
    871483 8to1:J (2.8) BS04 ZN N/A GO:0000287 ... P0A8T7 38951624
    871484 8to1:L (2.8) BS01 dna N/A GO:0000345 ... P00579 38951624
    871485 8to1:L (2.8) BS02 dna N/A GO:0000345 ... P00579 38951624
    871486 8to2:B (2.0) BS01 45D ? GO:0005515 ... P74102 38578996
    871487 8to3:A (2.49) BS01 IXC N/A N/A P00533 N/A
    871488 8to3:B (2.49) BS01 MG N/A N/A P00533 N/A
    871489 8to3:B (2.49) BS02 ANP N/A N/A P00533 N/A
    871490 8to3:C (2.49) BS01 MG N/A N/A P00533 N/A
    871491 8to3:C (2.49) BS02 ANP N/A N/A P00533 N/A
    871492 8to3:D (2.49) BS01 MG N/A N/A P00533 N/A
    871493 8to3:D (2.49) BS02 ANP N/A N/A P00533 N/A
    871494 8to4:A (2.99) BS01 MG N/A N/A P00533 N/A
    871495 8to4:A (2.99) BS02 ANP N/A N/A P00533 N/A
    871496 8to4:B (2.99) BS01 MG N/A N/A P00533 N/A
    871497 8to4:B (2.99) BS02 ANP N/A N/A P00533 N/A
    871498 8to4:C (2.99) BS01 MG N/A N/A P00533 N/A
    871499 8to4:C (2.99) BS02 ANP N/A N/A P00533 N/A
    871500 8to4:C (2.99) BS03 IXR N/A N/A P00533 N/A
    871501 8to4:D (2.99) BS01 MG N/A N/A P00533 N/A
    871502 8to4:D (2.99) BS02 ANP N/A N/A P00533 N/A
    871503 8to4:D (2.99) BS03 IXR N/A N/A P00533 N/A
    871504 8to6:I (2.9) BS01 dna N/A GO:0000345 ... P0A8V2 38951624
    871505 8to6:I (2.9) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    871506 8to6:J (2.9) BS01 dna N/A GO:0000287 ... P0A8T7 38951624
    871507 8to6:J (2.9) BS02 dna N/A GO:0000287 ... P0A8T7 38951624
    871508 8to6:J (2.9) BS03 MG N/A GO:0000287 ... P0A8T7 38951624
    871509 8to6:J (2.9) BS04 ZN N/A GO:0000287 ... P0A8T7 38951624
    871510 8to6:J (2.9) BS05 ZN N/A GO:0000287 ... P0A8T7 38951624
    871511 8to6:L (2.9) BS01 dna N/A GO:0000345 ... P00579 38951624
    871512 8to6:L (2.9) BS02 dna N/A GO:0000345 ... P00579 38951624
    871513 8to8:I (2.9) BS01 4QM N/A GO:0000345 ... P0A8V2 38951624
    871514 8to8:I (2.9) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    871515 8to8:J (2.9) BS01 dna N/A GO:0000287 ... P0A8T7 38951624
    871516 8to8:J (2.9) BS02 MG N/A GO:0000287 ... P0A8T7 38951624
    871517 8to8:J (2.9) BS03 ZN N/A GO:0000287 ... P0A8T7 38951624
    871518 8to8:J (2.9) BS04 ZN N/A GO:0000287 ... P0A8T7 38951624
    871519 8to8:L (2.9) BS01 dna N/A GO:0000345 ... P00579 38951624
    871520 8to8:L (2.9) BS02 dna N/A GO:0000345 ... P00579 38951624
    871521 8to8:L (2.9) BS03 4QM N/A GO:0000345 ... P00579 38951624
    871522 8toc:AB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871523 8toc:AF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871524 8toc:AG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871525 8toc:AI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871526 8toc:AN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871527 8toc:AO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871528 8toc:AQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871529 8toc:AT (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871530 8toc:AU (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871531 8toc:AV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871532 8toc:AZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871533 8toc:BF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871534 8toc:BK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871535 8toc:BO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871536 8toc:BP (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871537 8toc:BS (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871538 8toc:BX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871539 8toc:BZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871540 8toc:Bc (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871541 8toc:CA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871542 8toc:CB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871543 8toc:CC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871544 8toc:CG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871545 8toc:CK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871546 8toc:CN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871547 8toc:CO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871548 8toc:CQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871549 8toc:CX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871550 8toc:DA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871551 8toc:DF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871552 8toc:DH (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871553 8toc:DI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871554 8toc:DJ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871555 8toc:DN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871556 8toc:DO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871557 8toc:DS (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871558 8toc:DT (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871559 8toc:DW (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871560 8toc:DY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871561 8toc:DZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871562 8toc:EA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871563 8toc:EB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871564 8toc:EC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871565 8toc:ED (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871566 8toc:EE (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871567 8toc:EH (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871568 8toc:EI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871569 8toc:EM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871570 8toc:EQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871571 8toc:ES (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871572 8toc:EU (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871573 8toc:EV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871574 8toc:EW (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871575 8toc:EY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871576 8toc:Ec (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871577 8toc:FA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871578 8toc:FB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871579 8toc:FC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871580 8toc:FG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871581 8toc:FI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871582 8toc:FK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871583 8toc:FL (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871584 8toc:FM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871585 8toc:FN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871586 8toc:FX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871587 8toc:FY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871588 8toc:GA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871589 8toc:GM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871590 8toc:GP (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871591 8toc:GV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871592 8toc:GX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    871593 8toc:a (3.11) BS01 rna ? GO:0039666 ... Q9AZ43 38553443
    871594 8toc:b (3.11) BS01 rna ? GO:0039666 ... Q9AZ43 38553443
    871595 8toe:I (2.9) BS01 1N7 N/A GO:0000345 ... P0A8V2 38951624
    871596 8toe:J (2.9) BS01 MG N/A GO:0000287 ... P0A8T7 38951624
    871597 8toe:J (2.9) BS02 ZN N/A GO:0000287 ... P0A8T7 38951624
    871598 8toe:J (2.9) BS03 ZN N/A GO:0000287 ... P0A8T7 38951624
    871599 8toe:L (2.9) BS01 dna N/A GO:0000345 ... P00579 38951624
    871600 8toe:L (2.9) BS02 dna N/A GO:0000345 ... P00579 38951624
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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