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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    871201 8tkf:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    871202 8tkf:A (3.2) BS05 PT5 ? GO:0000822 ... Q14573 37898605
    871203 8tkf:A (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    871204 8tkf:B (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    871205 8tkf:B (3.2) BS02 ZN ? GO:0000822 ... Q14573 37898605
    871206 8tkf:B (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    871207 8tkf:B (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    871208 8tkf:B (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    871209 8tkf:B (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    871210 8tkf:C (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    871211 8tkf:C (3.2) BS02 ZN ? GO:0000822 ... Q14573 37898605
    871212 8tkf:C (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    871213 8tkf:C (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    871214 8tkf:C (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    871215 8tkf:C (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    871216 8tkf:D (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    871217 8tkf:D (3.2) BS02 PT5 ? GO:0000822 ... Q14573 37898605
    871218 8tkf:D (3.2) BS03 ZN ? GO:0000822 ... Q14573 37898605
    871219 8tkf:D (3.2) BS04 I3P ? GO:0000822 ... Q14573 37898605
    871220 8tkf:D (3.2) BS05 CA ? GO:0000822 ... Q14573 37898605
    871221 8tkf:D (3.2) BS06 ATP ? GO:0000822 ... Q14573 37898605
    871222 8tkg:A (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871223 8tkg:A (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871224 8tkg:A (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    871225 8tkg:A (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    871226 8tkg:A (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    871227 8tkg:B (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871228 8tkg:B (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871229 8tkg:B (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    871230 8tkg:B (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    871231 8tkg:B (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    871232 8tkg:C (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871233 8tkg:C (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871234 8tkg:C (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    871235 8tkg:C (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    871236 8tkg:C (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    871237 8tkg:D (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871238 8tkg:D (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871239 8tkg:D (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    871240 8tkg:D (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    871241 8tkg:D (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    871242 8tkh:A (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871243 8tkh:A (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871244 8tkh:A (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871245 8tkh:B (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871246 8tkh:B (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871247 8tkh:B (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871248 8tkh:C (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871249 8tkh:C (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871250 8tkh:C (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871251 8tkh:D (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871252 8tkh:D (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871253 8tkh:D (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871254 8tki:A (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871255 8tki:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871256 8tki:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871257 8tki:B (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871258 8tki:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871259 8tki:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871260 8tki:C (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871261 8tki:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871262 8tki:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871263 8tki:D (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871264 8tki:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871265 8tki:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871266 8tkl:A (3.0) BS01 dna ? GO:0003677 ... P25799 37759710
    871267 8tkl:A (3.0) BS02 dna ? GO:0003677 ... P25799 37759710
    871268 8tkl:B (3.0) BS01 dna ? GO:0003677 ... P25799 37759710
    871269 8tkl:B (3.0) BS02 dna ? GO:0003677 ... P25799 37759710
    871270 8tkm:A (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    871271 8tkm:A (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    871272 8tkm:B (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    871273 8tkm:B (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    871274 8tkn:A (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    871275 8tkn:A (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    871276 8tkn:B (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    871277 8tkn:B (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    871278 8tkp:B (2.9) BS01 CA ? GO:0000287 ... Q93640 38354260
    871279 8tkp:B (2.9) BS02 CA ? GO:0000287 ... Q93640 38354260
    871280 8tkp:D (2.9) BS01 CLR ? GO:0005886 ... Q11069 38354260
    871281 8tkp:E (2.9) BS01 CA ? GO:0000287 ... Q93640 38354260
    871282 8tkp:E (2.9) BS02 CA ? GO:0000287 ... Q93640 38354260
    871283 8tkz:B (2.06) BS01 CO N/A GO:0004427 ... O94725 N/A
    871284 8tkz:B (2.06) BS02 ZN N/A GO:0004427 ... O94725 N/A
    871285 8tkz:B (2.06) BS03 ZN N/A GO:0004427 ... O94725 N/A
    871286 8tl0:A (3.1) BS01 rna ? N/A D0LTI2 38301007
    871287 8tl0:A (3.1) BS02 rna ? N/A D0LTI2 38301007
    871288 8tl0:B (3.1) BS01 rna ? N/A D0LTI2 38301007
    871289 8tl0:B (3.1) BS02 rna ? N/A D0LTI2 38301007
    871290 8tl0:C (3.1) BS01 rna ? N/A D0LTI2 38301007
    871291 8tl0:C (3.1) BS02 rna ? N/A D0LTI2 38301007
    871292 8tl0:D (3.1) BS01 rna ? N/A D0LTI2 38301007
    871293 8tl0:D (3.1) BS02 rna ? N/A D0LTI2 38301007
    871294 8tl0:I (3.1) BS01 rna ? N/A D0LTI2 38301007
    871295 8tl0:I (3.1) BS02 rna ? N/A D0LTI2 38301007
    871296 8tl0:K (3.1) BS01 rna ? N/A D0LTI2 38301007
    871297 8tl0:L (3.1) BS01 rna ? N/A D0LTI2 38301007
    871298 8tl1:A (3.16) BS01 GCH ? GO:0001172 ... P03526 38503747
    871299 8tl6:A (2.63) BS01 peptide ? GO:0003676 ... Q16531 38538798
    871300 8tl6:B (2.63) BS01 peptide ? GO:0005515 ... Q96JK2 38538798
    871301 8tl8:A (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    871302 8tl8:A (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    871303 8tl8:B (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    871304 8tl8:B (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    871305 8tl9:A (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871306 8tl9:A (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871307 8tl9:A (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    871308 8tl9:A (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    871309 8tl9:B (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871310 8tl9:B (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871311 8tl9:B (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    871312 8tl9:B (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    871313 8tl9:C (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871314 8tl9:C (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871315 8tl9:C (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    871316 8tl9:C (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    871317 8tl9:D (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871318 8tl9:D (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871319 8tl9:D (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    871320 8tl9:D (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    871321 8tla:A (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871322 8tla:A (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871323 8tla:A (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    871324 8tla:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    871325 8tla:B (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871326 8tla:B (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871327 8tla:B (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    871328 8tla:B (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    871329 8tla:C (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871330 8tla:C (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871331 8tla:C (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    871332 8tla:C (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    871333 8tla:D (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871334 8tla:D (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871335 8tla:D (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    871336 8tla:D (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    871337 8tlc:A (2.72) BS01 I6I 2.1.2.1 GO:0002082 ... P34897 38324671
    871338 8tlc:B (2.72) BS01 I6I 2.1.2.1 GO:0002082 ... P34897 38324671
    871339 8tle:A (2.08) BS01 dna N/A N/A Q9D0M2 38168392
    871340 8tle:A (2.08) BS02 ZN N/A N/A Q9D0M2 38168392
    871341 8tle:A (2.08) BS03 ZN N/A N/A Q9D0M2 38168392
    871342 8tle:A (2.08) BS04 ZN N/A N/A Q9D0M2 38168392
    871343 8tlf:A (1.64) BS01 dna N/A N/A Q9D0M2 38168392
    871344 8tlf:A (1.64) BS02 ZN N/A N/A Q9D0M2 38168392
    871345 8tlf:A (1.64) BS03 ZN N/A N/A Q9D0M2 38168392
    871346 8tlf:A (1.64) BS04 ZN N/A N/A Q9D0M2 38168392
    871347 8tlf:B (1.64) BS01 dna N/A N/A Q9D0M2 38168392
    871348 8tlf:B (1.64) BS02 ZN N/A N/A Q9D0M2 38168392
    871349 8tlf:B (1.64) BS03 ZN N/A N/A Q9D0M2 38168392
    871350 8tlf:B (1.64) BS04 ZN N/A N/A Q9D0M2 38168392
    871351 8tlg:A (2.09) BS01 dna N/A N/A Q9D0M2 38168392
    871352 8tlg:A (2.09) BS02 ZN N/A N/A Q9D0M2 38168392
    871353 8tlg:A (2.09) BS03 ZN N/A N/A Q9D0M2 38168392
    871354 8tlg:A (2.09) BS04 ZN N/A N/A Q9D0M2 38168392
    871355 8tlh:A (1.94) BS01 dna N/A N/A Q9D0M2 38168392
    871356 8tlh:A (1.94) BS02 ZN N/A N/A Q9D0M2 38168392
    871357 8tlh:A (1.94) BS03 ZN N/A N/A Q9D0M2 38168392
    871358 8tlh:A (1.94) BS04 ZN N/A N/A Q9D0M2 38168392
    871359 8tlh:B (1.94) BS01 dna N/A N/A Q9D0M2 38168392
    871360 8tlh:B (1.94) BS02 ZN N/A N/A Q9D0M2 38168392
    871361 8tlh:B (1.94) BS03 ZN N/A N/A Q9D0M2 38168392
    871362 8tlh:B (1.94) BS04 ZN N/A N/A Q9D0M2 38168392
    871363 8tli:A (2.2) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 10651278
    871364 8tli:A (2.2) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    871365 8tli:A (2.2) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    871366 8tli:A (2.2) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    871367 8tli:A (2.2) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    871368 8tlj:A (2.3) BS01 dna N/A N/A Q9D0M2 38168392
    871369 8tlj:A (2.3) BS02 ZN N/A N/A Q9D0M2 38168392
    871370 8tlj:A (2.3) BS03 ZN N/A N/A Q9D0M2 38168392
    871371 8tlj:A (2.3) BS04 ZN N/A N/A Q9D0M2 38168392
    871372 8tlj:B (2.3) BS01 dna N/A N/A Q9D0M2 38168392
    871373 8tlj:B (2.3) BS02 ZN N/A N/A Q9D0M2 38168392
    871374 8tlj:B (2.3) BS03 ZN N/A N/A Q9D0M2 38168392
    871375 8tlj:B (2.3) BS04 ZN N/A N/A Q9D0M2 38168392
    871376 8tlk:A (2.99) BS01 dna N/A N/A Q9BWT1 38168392
    871377 8tlk:A (2.99) BS02 ZN N/A N/A Q9BWT1 38168392
    871378 8tlk:A (2.99) BS03 ZN N/A N/A Q9BWT1 38168392
    871379 8tlk:A (2.99) BS04 ZN N/A N/A Q9BWT1 38168392
    871380 8tlk:B (2.99) BS01 dna N/A N/A Q9BWT1 38168392
    871381 8tlk:B (2.99) BS02 ZN N/A N/A Q9BWT1 38168392
    871382 8tlk:B (2.99) BS03 ZN N/A N/A Q9BWT1 38168392
    871383 8tlk:B (2.99) BS04 ZN N/A N/A Q9BWT1 38168392
    871384 8tll:A (2.58) BS01 dna N/A N/A Q9D0M2 38168392
    871385 8tll:A (2.58) BS02 dna N/A N/A Q9D0M2 38168392
    871386 8tll:A (2.58) BS03 ZN N/A N/A Q9D0M2 38168392
    871387 8tll:A (2.58) BS04 ZN N/A N/A Q9D0M2 38168392
    871388 8tll:A (2.58) BS05 ZN N/A N/A Q9D0M2 38168392
    871389 8tll:B (2.58) BS01 dna N/A N/A Q9D0M2 38168392
    871390 8tll:B (2.58) BS02 ZN N/A N/A Q9D0M2 38168392
    871391 8tll:B (2.58) BS03 ZN N/A N/A Q9D0M2 38168392
    871392 8tll:B (2.58) BS04 ZN N/A N/A Q9D0M2 38168392
    871393 8tln:E (1.6) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 1445869
    871394 8tln:E (1.6) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 1445869
    871395 8tln:E (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    871396 8tln:E (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    871397 8tln:E (1.6) BS05 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    871398 8tln:E (1.6) BS06 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    871399 8tln:E (1.6) BS07 ZN 3.4.24.27 GO:0004222 ... P00800 1445869
    871400 8tlo:A (2.76) BS01 dna N/A N/A Q9H165 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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