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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    871001 8ti1:D (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    871002 8ti1:D (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    871003 8ti1:E (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    871004 8ti1:E (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871005 8ti1:E (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871006 8ti1:F (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    871007 8ti1:F (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871008 8ti1:F (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871009 8ti1:G (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    871010 8ti1:G (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871011 8ti1:G (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871012 8ti1:H (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    871013 8ti1:H (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871014 8ti1:H (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871015 8ti2:A (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    871016 8ti2:A (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    871017 8ti2:B (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    871018 8ti2:B (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    871019 8ti2:C (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    871020 8ti2:C (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    871021 8ti2:D (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    871022 8ti2:D (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    871023 8ti2:E (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    871024 8ti2:E (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871025 8ti2:E (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871026 8ti2:F (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    871027 8ti2:F (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871028 8ti2:F (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871029 8ti2:G (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    871030 8ti2:G (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871031 8ti2:G (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871032 8ti2:H (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    871033 8ti2:H (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871034 8ti2:H (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    871035 8ti3:A (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    871036 8ti3:B (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    871037 8ti3:C (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    871038 8ti3:D (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    871039 8ti3:E (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    871040 8ti7:A (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871041 8ti7:A (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871042 8ti7:C (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871043 8ti7:C (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871044 8ti7:E (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871045 8ti7:E (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871046 8ti7:G (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871047 8ti7:I (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871048 8ti7:K (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871049 8ti7:K (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871050 8ti7:K (2.397) BS03 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871051 8ti7:M (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871052 8ti7:O (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871053 8ti7:O (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    871054 8tic:A (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871055 8tic:B (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871056 8tic:C (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871057 8tic:D (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871058 8tip:C (2.79) BS01 dna ? GO:0003677 ... P03856 N/A
    871059 8tip:C (2.79) BS02 dna ? GO:0003677 ... P03856 N/A
    871060 8tip:C (2.79) BS03 MG ? GO:0003677 ... P03856 N/A
    871061 8tip:C (2.79) BS04 MG ? GO:0003677 ... P03856 N/A
    871062 8tiq:C (2.45) BS01 dna ? GO:0003677 ... P03856 N/A
    871063 8tiq:C (2.45) BS02 dna ? GO:0003677 ... P03856 N/A
    871064 8tiq:C (2.45) BS03 MG ? GO:0003677 ... P03856 N/A
    871065 8tir:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    871066 8tir:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    871067 8tir:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    871068 8tis:C (2.54) BS01 dna ? GO:0003677 ... P03856 N/A
    871069 8tis:C (2.54) BS02 dna ? GO:0003677 ... P03856 N/A
    871070 8tis:C (2.54) BS03 MG ? GO:0003677 ... P03856 N/A
    871071 8tit:C (2.84) BS01 dna ? GO:0003677 ... P03856 N/A
    871072 8tit:C (2.84) BS02 dna ? GO:0003677 ... P03856 N/A
    871073 8tit:C (2.84) BS03 MG ? GO:0003677 ... P03856 N/A
    871074 8tiu:C (3.9) BS01 dna ? GO:0003677 ... P03856 N/A
    871075 8tiu:C (3.9) BS02 dna ? GO:0003677 ... P03856 N/A
    871076 8tiu:C (3.9) BS03 MG ? GO:0003677 ... P03856 N/A
    871077 8tiv:C (3.35) BS01 dna ? GO:0003677 ... P03856 N/A
    871078 8tiv:C (3.35) BS02 dna ? GO:0003677 ... P03856 N/A
    871079 8tiv:C (3.35) BS03 MG ? GO:0003677 ... P03856 N/A
    871080 8tiw:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    871081 8tiw:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    871082 8tiw:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    871083 8tix:C (2.91) BS01 dna ? GO:0003677 ... P03856 N/A
    871084 8tix:C (2.91) BS02 dna ? GO:0003677 ... P03856 N/A
    871085 8tix:C (2.91) BS03 MG ? GO:0003677 ... P03856 N/A
    871086 8tiy:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    871087 8tiy:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    871088 8tiy:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    871089 8tiz:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    871090 8tiz:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    871091 8tiz:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    871092 8tj0:C (3.24) BS01 dna ? GO:0003677 ... P03856 N/A
    871093 8tj0:C (3.24) BS02 dna ? GO:0003677 ... P03856 N/A
    871094 8tj0:C (3.24) BS03 MG ? GO:0003677 ... P03856 N/A
    871095 8tj1:C (3.15) BS01 dna ? GO:0003677 ... P03856 N/A
    871096 8tj1:C (3.15) BS02 dna ? GO:0003677 ... P03856 N/A
    871097 8tj1:C (3.15) BS03 MG ? GO:0003677 ... P03856 N/A
    871098 8tj4:A (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    871099 8tj4:C (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    871100 8tj4:E (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    871101 8tj4:G (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    871102 8tj5:0 (6.6) BS01 peptide ? GO:0000972 ... P38181 37738963
    871103 8tj5:E (6.6) BS01 peptide ? GO:0005515 ... P48837 37738963
    871104 8tj5:E (6.6) BS02 peptide ? GO:0005515 ... P48837 37738963
    871105 8tj5:E (6.6) BS03 peptide ? GO:0005515 ... P48837 37738963
    871106 8tj5:F (6.6) BS01 peptide ? GO:0000055 ... Q02199 37738963
    871107 8tj5:K (6.6) BS01 peptide ? GO:0005515 ... P48837 37738963
    871108 8tj5:K (6.6) BS02 peptide ? GO:0005515 ... P48837 37738963
    871109 8tj5:K (6.6) BS03 peptide ? GO:0005515 ... P48837 37738963
    871110 8tj5:L (6.6) BS01 peptide ? GO:0000055 ... Q02199 37738963
    871111 8tj5:M (6.6) BS01 peptide ? GO:0005515 ... P47054 37738963
    871112 8tj5:N (6.6) BS01 peptide ? GO:0005634 ... P52593 37738963
    871113 8tj5:O (6.6) BS01 peptide ? GO:0005515 ... P47054 37738963
    871114 8tj5:P (6.6) BS01 peptide ? GO:0005634 ... P52593 37738963
    871115 8tj5:R (6.6) BS01 peptide ? GO:0000055 ... P34077 37738963
    871116 8tj5:T (6.6) BS01 peptide ? GO:0000055 ... P34077 37738963
    871117 8tj5:Y (6.6) BS01 peptide ? GO:0000972 ... P38181 37738963
    871118 8tj6:A (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    871119 8tj6:B (2.85) BS01 FUC ? GO:0019031 ... O11283 38307019
    871120 8tj6:C (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    871121 8tj6:E (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    871122 8tj6:G (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    871123 8tj7:A (2.85) BS01 SIA ? GO:0019031 ... H9XM74 38307019
    871124 8tj8:A (2.56) BS01 SIA ? GO:0019031 ... I6SI59 38307019
    871125 8tj9:A (1.9) BS01 SIA ? GO:0019031 ... A0A0Y0S9M3 38307019
    871126 8tja:A (2.05) BS01 SIA ? GO:0019031 ... A0A4P8J8E1 38307019
    871127 8tjb:A (2.45) BS01 SIA ? GO:0019031 ... A0A1W6AW68 38307019
    871128 8tjc:A (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871129 8tjc:A (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871130 8tjc:B (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871131 8tjc:B (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871132 8tjc:C (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871133 8tjc:C (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871134 8tjc:D (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871135 8tjc:D (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    871136 8tje:A (3.4) BS01 dna ? GO:0005198 ... A0AA49KFS3 N/A
    871137 8tje:A (3.4) BS02 dna ? GO:0005198 ... A0AA49KFS3 N/A
    871138 8tjg:A (1.45) BS01 ZN 4.2.99.18 GO:0000703 ... A0QT90 N/A
    871139 8tjh:A (2.0) BS01 CRU N/A N/A N/A N/A
    871140 8tjh:B (2.0) BS01 CRU N/A N/A N/A N/A
    871141 8tjj:A (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    871142 8tjj:B (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    871143 8tjj:C (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    871144 8tjj:D (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    871145 8tjk:A (1.85) BS01 SAH ? GO:0008168 ... A0A0F7G196 38042494
    871146 8tjk:B (1.85) BS01 SAH ? GO:0008168 ... A0A0F7G196 38042494
    871147 8tjl:A (2.7) BS01 HZ6 2.7.10.1 GO:0004672 ... P00533 38300264
    871148 8tjr:B (3.29) BS01 MAN N/A N/A Q2N0S6 N/A
    871149 8tjr:C (3.29) BS01 MAN N/A N/A Q2N0S6 N/A
    871150 8tjs:G (3.31) BS01 MAN N/A N/A Q2N0S6 N/A
    871151 8tjs:N (3.31) BS01 MAN N/A N/A Q2N0S6 N/A
    871152 8tjs:O (3.31) BS01 MAN N/A N/A Q2N0S6 N/A
    871153 8tk2:A (1.7) BS01 I1Y N/A N/A P51452 N/A
    871154 8tk2:B (1.7) BS01 I1Y N/A N/A P51452 N/A
    871155 8tk3:A (2.0) BS01 I2X N/A N/A P51452 N/A
    871156 8tk3:A (2.0) BS02 I2X N/A N/A P51452 N/A
    871157 8tk7:A (2.53) BS01 peptide ? GO:0006826 ... Q1D6H4 37657675
    871158 8tk7:B (2.53) BS01 peptide ? GO:0006826 ... Q1D6H4 37657675
    871159 8tk7:C (2.53) BS01 peptide ? GO:0006826 ... Q1D6H4 37657675
    871160 8tk8:A (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871161 8tk8:A (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871162 8tk8:A (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871163 8tk8:B (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871164 8tk8:B (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871165 8tk8:B (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871166 8tk8:C (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871167 8tk8:C (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871168 8tk8:C (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871169 8tk8:D (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871170 8tk8:D (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871171 8tk8:D (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871172 8tkb:A (1.71) BS01 AMP N/A GO:0000215 ... O57899 N/A
    871173 8tkb:A (1.71) BS02 AMP N/A GO:0000215 ... O57899 N/A
    871174 8tkd:A (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871175 8tkd:A (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871176 8tkd:A (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871177 8tkd:B (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871178 8tkd:B (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871179 8tkd:B (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871180 8tkd:C (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871181 8tkd:C (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871182 8tkd:C (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871183 8tkd:D (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871184 8tkd:D (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871185 8tkd:D (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871186 8tke:A (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871187 8tke:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871188 8tke:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871189 8tke:B (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871190 8tke:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871191 8tke:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871192 8tke:C (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871193 8tke:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871194 8tke:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871195 8tke:D (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871196 8tke:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871197 8tke:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    871198 8tkf:A (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    871199 8tkf:A (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    871200 8tkf:A (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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