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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870601 8tf2:C (2.57) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    870602 8tf2:C (2.57) BS02 CPL ? GO:0005216 ... Q9XSM3 38141613
    870603 8tf2:C (2.57) BS03 ERG ? GO:0005216 ... Q9XSM3 38141613
    870604 8tf2:C (2.57) BS04 ERG ? GO:0005216 ... Q9XSM3 38141613
    870605 8tf2:C (2.57) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    870606 8tf2:C (2.57) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870607 8tf2:C (2.57) BS07 CPL ? GO:0005216 ... Q9XSM3 38141613
    870608 8tf2:C (2.57) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870609 8tf2:C (2.57) BS09 ERG ? GO:0005216 ... Q9XSM3 38141613
    870610 8tf2:D (2.57) BS01 ERG ? GO:0005216 ... Q9XSM3 38141613
    870611 8tf2:D (2.57) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870612 8tf2:D (2.57) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    870613 8tf2:D (2.57) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    870614 8tf2:D (2.57) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    870615 8tf2:D (2.57) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870616 8tf2:D (2.57) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    870617 8tf2:D (2.57) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870618 8tf2:D (2.57) BS09 CPL ? GO:0005216 ... Q9XSM3 38141613
    870619 8tf3:A (2.94) BS01 ERG ? GO:0005216 ... Q9XSM3 38141613
    870620 8tf3:A (2.94) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870621 8tf3:A (2.94) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    870622 8tf3:A (2.94) BS04 ECN ? GO:0005216 ... Q9XSM3 38141613
    870623 8tf3:A (2.94) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    870624 8tf3:A (2.94) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870625 8tf3:A (2.94) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    870626 8tf3:A (2.94) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870627 8tf3:A (2.94) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    870628 8tf3:B (2.94) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    870629 8tf3:B (2.94) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870630 8tf3:B (2.94) BS03 ERG ? GO:0005216 ... Q9XSM3 38141613
    870631 8tf3:B (2.94) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    870632 8tf3:B (2.94) BS05 ECN ? GO:0005216 ... Q9XSM3 38141613
    870633 8tf3:B (2.94) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870634 8tf3:B (2.94) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    870635 8tf3:B (2.94) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870636 8tf3:B (2.94) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    870637 8tf3:C (2.94) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    870638 8tf3:C (2.94) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870639 8tf3:C (2.94) BS03 ERG ? GO:0005216 ... Q9XSM3 38141613
    870640 8tf3:C (2.94) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    870641 8tf3:C (2.94) BS05 ECN ? GO:0005216 ... Q9XSM3 38141613
    870642 8tf3:C (2.94) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870643 8tf3:C (2.94) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    870644 8tf3:C (2.94) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870645 8tf3:C (2.94) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    870646 8tf3:D (2.94) BS01 ERG ? GO:0005216 ... Q9XSM3 38141613
    870647 8tf3:D (2.94) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870648 8tf3:D (2.94) BS03 ECN ? GO:0005216 ... Q9XSM3 38141613
    870649 8tf3:D (2.94) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    870650 8tf3:D (2.94) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    870651 8tf3:D (2.94) BS06 ERG ? GO:0005216 ... Q9XSM3 38141613
    870652 8tf3:D (2.94) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    870653 8tf3:D (2.94) BS08 CPL ? GO:0005216 ... Q9XSM3 38141613
    870654 8tf3:D (2.94) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    870655 8tf4:A (2.86) BS01 ERG ? GO:0005216 ... Q9XSM3 38141613
    870656 8tf4:A (2.86) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870657 8tf4:A (2.86) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    870658 8tf4:A (2.86) BS04 ECN ? GO:0005216 ... Q9XSM3 38141613
    870659 8tf4:A (2.86) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    870660 8tf4:A (2.86) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870661 8tf4:A (2.86) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    870662 8tf4:A (2.86) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870663 8tf4:A (2.86) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    870664 8tf4:B (2.86) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    870665 8tf4:B (2.86) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870666 8tf4:B (2.86) BS03 ERG ? GO:0005216 ... Q9XSM3 38141613
    870667 8tf4:B (2.86) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    870668 8tf4:B (2.86) BS05 ECN ? GO:0005216 ... Q9XSM3 38141613
    870669 8tf4:B (2.86) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870670 8tf4:B (2.86) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    870671 8tf4:B (2.86) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870672 8tf4:B (2.86) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    870673 8tf4:C (2.86) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    870674 8tf4:C (2.86) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870675 8tf4:C (2.86) BS03 ERG ? GO:0005216 ... Q9XSM3 38141613
    870676 8tf4:C (2.86) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    870677 8tf4:C (2.86) BS05 ECN ? GO:0005216 ... Q9XSM3 38141613
    870678 8tf4:C (2.86) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870679 8tf4:C (2.86) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    870680 8tf4:C (2.86) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870681 8tf4:C (2.86) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    870682 8tf4:D (2.86) BS01 ERG ? GO:0005216 ... Q9XSM3 38141613
    870683 8tf4:D (2.86) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870684 8tf4:D (2.86) BS03 ECN ? GO:0005216 ... Q9XSM3 38141613
    870685 8tf4:D (2.86) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    870686 8tf4:D (2.86) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    870687 8tf4:D (2.86) BS06 ERG ? GO:0005216 ... Q9XSM3 38141613
    870688 8tf4:D (2.86) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    870689 8tf4:D (2.86) BS08 CPL ? GO:0005216 ... Q9XSM3 38141613
    870690 8tf4:D (2.86) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    870691 8tf9:A (1.55) BS01 I7P 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    870692 8tf9:A (1.55) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    870693 8tf9:A (1.55) BS03 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    870694 8tfa:A (1.4) BS01 U6J 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    870695 8tfa:A (1.4) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    870696 8tfa:A (1.4) BS03 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    870697 8tfb:A (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870698 8tfb:B (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870699 8tfb:C (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870700 8tfb:D (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870701 8tfb:L (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870702 8tfb:M (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870703 8tfb:O (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870704 8tfb:P (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870705 8tfb:Q (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870706 8tfb:V (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870707 8tfb:X (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870708 8tfb:Y (2.99) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870709 8tff:A (2.34) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    870710 8tff:A (2.34) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    870711 8tff:A (2.34) BS03 CA ? GO:0000160 ... A5FFU4 N/A
    870712 8tff:A (2.34) BS04 BEF ? GO:0000160 ... A5FFU4 N/A
    870713 8tff:B (2.34) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    870714 8tff:B (2.34) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    870715 8tff:B (2.34) BS03 CA ? GO:0000160 ... A5FFU4 N/A
    870716 8tff:B (2.34) BS04 BEF ? GO:0000160 ... A5FFU4 N/A
    870717 8tff:B (2.34) BS05 BEF ? GO:0000160 ... A5FFU4 N/A
    870718 8tfk:A (2.66) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870719 8tfk:A (2.66) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870720 8tfk:A (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870721 8tfk:A (2.66) BS04 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870722 8tfk:A (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870723 8tfk:B (2.66) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870724 8tfk:B (2.66) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870725 8tfk:B (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870726 8tfk:B (2.66) BS04 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870727 8tfk:B (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870728 8tfk:C (2.66) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870729 8tfk:C (2.66) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870730 8tfk:C (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870731 8tfk:C (2.66) BS04 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870732 8tfk:C (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870733 8tfk:D (2.66) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870734 8tfk:D (2.66) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870735 8tfk:D (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870736 8tfk:D (2.66) BS04 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870737 8tfk:D (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870738 8tfk:E (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870739 8tfk:E (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870740 8tfk:E (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870741 8tfk:E (2.66) BS04 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870742 8tfk:E (2.66) BS05 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870743 8tfk:F (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870744 8tfk:F (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870745 8tfk:F (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870746 8tfk:F (2.66) BS04 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870747 8tfk:F (2.66) BS05 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870748 8tfk:G (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870749 8tfk:G (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870750 8tfk:G (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870751 8tfk:G (2.66) BS04 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870752 8tfk:G (2.66) BS05 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870753 8tfk:H (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870754 8tfk:H (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870755 8tfk:H (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870756 8tfk:H (2.66) BS04 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870757 8tfk:H (2.66) BS05 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870758 8tfk:I (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870759 8tfk:I (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870760 8tfk:I (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870761 8tfk:I (2.66) BS04 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870762 8tfk:I (2.66) BS05 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870763 8tfk:J (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870764 8tfk:J (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870765 8tfk:J (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870766 8tfk:J (2.66) BS04 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870767 8tfk:J (2.66) BS05 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870768 8tfk:K (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870769 8tfk:K (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870770 8tfk:K (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870771 8tfk:K (2.66) BS04 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870772 8tfk:L (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870773 8tfk:L (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870774 8tfk:L (2.66) BS03 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870775 8tfk:L (2.66) BS04 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870776 8tfk:L (2.66) BS05 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    870777 8tfm:A (2.72) BS01 ZN ? GO:0000160 ... A5FFU4 N/A
    870778 8tfm:A (2.72) BS02 ZN ? GO:0000160 ... A5FFU4 N/A
    870779 8tfm:A (2.72) BS03 ZN ? GO:0000160 ... A5FFU4 N/A
    870780 8tfm:B (2.72) BS01 ZN ? GO:0000160 ... A5FFU4 N/A
    870781 8tfm:B (2.72) BS02 ZN ? GO:0000160 ... A5FFU4 N/A
    870782 8tfm:B (2.72) BS03 ZN ? GO:0000160 ... A5FFU4 N/A
    870783 8tfo:A (2.0) BS01 MEV 2.7.1.36 GO:0004496 ... A0A1D1VW28 38411551
    870784 8tfo:B (2.0) BS01 MEV 2.7.1.36 GO:0004496 ... A0A1D1VW28 38411551
    870785 8tfp:A (1.78) BS01 84K N/A N/A N/A 37534714
    870786 8tfp:B (1.78) BS01 84K N/A N/A N/A 37534714
    870787 8tfp:H (1.78) BS01 84K N/A N/A N/A 37534714
    870788 8tfp:L (1.78) BS01 84K N/A N/A N/A 37534714
    870789 8tfq:A (1.8) BS01 7V7 N/A N/A N/A 37534714
    870790 8tfq:B (1.8) BS01 7V7 N/A N/A N/A 37534714
    870791 8tfq:H (1.8) BS01 7V7 N/A N/A N/A 37534714
    870792 8tfq:L (1.8) BS01 7V7 N/A N/A N/A 37534714
    870793 8tfu:A (1.482) BS01 peptide ? N/A P03698 38663547
    870794 8tfu:A (1.482) BS02 peptide ? N/A P03698 38663547
    870795 8tfu:B (1.482) BS01 peptide ? N/A P03698 38663547
    870796 8tfu:B (1.482) BS02 peptide ? N/A P03698 38663547
    870797 8tfw:A (1.93) BS01 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    870798 8tfw:A (1.93) BS02 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    870799 8tfw:B (1.93) BS01 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    870800 8tfw:B (1.93) BS02 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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