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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870201 8tct:A (1.86) BS02 CO ? GO:0016853 ... Q8A5T2 38898276
    870202 8tcu:A (2.0) BS01 ZR3 1.5.1.2 GO:0004735 ... P32322 38411104
    870203 8tcu:A (2.0) BS02 ZR3 1.5.1.2 GO:0004735 ... P32322 38411104
    870204 8tcu:B (2.0) BS01 ZR3 1.5.1.2 GO:0004735 ... P32322 38411104
    870205 8tcu:B (2.0) BS02 ZR3 1.5.1.2 GO:0004735 ... P32322 38411104
    870206 8tcu:C (2.0) BS01 ZR3 1.5.1.2 GO:0004735 ... P32322 38411104
    870207 8tcu:C (2.0) BS02 ZR3 1.5.1.2 GO:0004735 ... P32322 38411104
    870208 8tcu:D (2.0) BS01 ZR3 1.5.1.2 GO:0004735 ... P32322 38411104
    870209 8tcu:D (2.0) BS02 ZR3 1.5.1.2 GO:0004735 ... P32322 38411104
    870210 8tcu:E (2.0) BS01 ZR3 1.5.1.2 GO:0004735 ... P32322 38411104
    870211 8tcv:B (1.74) BS01 ZR0 1.5.1.2 GO:0004735 ... P32322 38411104
    870212 8tcw:A (1.94) BS01 ZR6 1.5.1.2 GO:0004735 ... P32322 38411104
    870213 8tcw:A (1.94) BS02 ZR6 1.5.1.2 GO:0004735 ... P32322 38411104
    870214 8tcw:B (1.94) BS01 ZR6 1.5.1.2 GO:0004735 ... P32322 38411104
    870215 8tcw:B (1.94) BS02 ZR6 1.5.1.2 GO:0004735 ... P32322 38411104
    870216 8tcw:C (1.94) BS01 ZR6 1.5.1.2 GO:0004735 ... P32322 38411104
    870217 8tcw:C (1.94) BS02 ZR6 1.5.1.2 GO:0004735 ... P32322 38411104
    870218 8tcw:D (1.94) BS01 ZR6 1.5.1.2 GO:0004735 ... P32322 38411104
    870219 8tcw:D (1.94) BS02 ZR6 1.5.1.2 GO:0004735 ... P32322 38411104
    870220 8tcw:E (1.94) BS01 ZR6 1.5.1.2 GO:0004735 ... P32322 38411104
    870221 8tcx:A (1.72) BS01 ZR9 1.5.1.2 GO:0004735 ... P32322 38411104
    870222 8tcx:A (1.72) BS02 ZR9 1.5.1.2 GO:0004735 ... P32322 38411104
    870223 8tcx:B (1.72) BS01 ZR9 1.5.1.2 GO:0004735 ... P32322 38411104
    870224 8tcx:C (1.72) BS01 ZR9 1.5.1.2 GO:0004735 ... P32322 38411104
    870225 8tcx:C (1.72) BS02 ZR9 1.5.1.2 GO:0004735 ... P32322 38411104
    870226 8tcx:D (1.72) BS01 ZR9 1.5.1.2 GO:0004735 ... P32322 38411104
    870227 8tcy:A (1.95) BS01 ZRE 1.5.1.2 GO:0004735 ... P32322 38411104
    870228 8tcy:B (1.95) BS01 ZRE 1.5.1.2 GO:0004735 ... P32322 38411104
    870229 8tcy:C (1.95) BS01 ZRE 1.5.1.2 GO:0004735 ... P32322 38411104
    870230 8tcy:D (1.95) BS01 ZRE 1.5.1.2 GO:0004735 ... P32322 38411104
    870231 8tcz:A (2.1) BS01 ZRI 1.5.1.2 GO:0004735 ... P32322 38411104
    870232 8tcz:B (2.1) BS01 ZRI 1.5.1.2 GO:0004735 ... P32322 38411104
    870233 8td0:A (2.2) BS01 ZS5 1.5.1.2 GO:0004735 ... P32322 38411104
    870234 8td0:B (2.2) BS01 ZS5 1.5.1.2 GO:0004735 ... P32322 38411104
    870235 8td0:C (2.2) BS01 ZS5 1.5.1.2 GO:0004735 ... P32322 38411104
    870236 8td0:D (2.2) BS01 ZS5 1.5.1.2 GO:0004735 ... P32322 38411104
    870237 8td1:A (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    870238 8td1:A (1.88) BS02 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    870239 8td1:B (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    870240 8td1:B (1.88) BS02 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    870241 8td1:C (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    870242 8td1:C (1.88) BS02 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    870243 8td1:D (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    870244 8td1:D (1.88) BS02 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    870245 8td1:E (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    870246 8td2:A (1.65) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870247 8td2:A (1.65) BS02 ZPS N/A GO:0004735 ... P32322 39133178
    870248 8td2:B (1.65) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870249 8td2:B (1.65) BS02 ZPS N/A GO:0004735 ... P32322 39133178
    870250 8td2:C (1.65) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870251 8td2:C (1.65) BS02 ZPS N/A GO:0004735 ... P32322 39133178
    870252 8td2:D (1.65) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870253 8td2:D (1.65) BS02 ZPS N/A GO:0004735 ... P32322 39133178
    870254 8td2:E (1.65) BS01 ZPS N/A GO:0004735 ... P32322 39133178
    870255 8td3:A (1.67) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870256 8td3:A (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    870257 8td3:A (1.67) BS03 GJM N/A GO:0004735 ... P32322 39133178
    870258 8td3:B (1.67) BS01 GJM N/A GO:0004735 ... P32322 39133178
    870259 8td3:B (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    870260 8td3:B (1.67) BS03 NAI N/A GO:0004735 ... P32322 39133178
    870261 8td3:C (1.67) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870262 8td3:C (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    870263 8td3:C (1.67) BS03 GJM N/A GO:0004735 ... P32322 39133178
    870264 8td3:D (1.67) BS01 GJM N/A GO:0004735 ... P32322 39133178
    870265 8td3:D (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    870266 8td3:D (1.67) BS03 NAI N/A GO:0004735 ... P32322 39133178
    870267 8td3:E (1.67) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870268 8td3:E (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    870269 8td4:A (1.76) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870270 8td4:A (1.76) BS02 UJD N/A GO:0004735 ... P32322 39133178
    870271 8td4:B (1.76) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870272 8td4:B (1.76) BS02 UJD N/A GO:0004735 ... P32322 39133178
    870273 8td4:C (1.76) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870274 8td4:C (1.76) BS02 UJD N/A GO:0004735 ... P32322 39133178
    870275 8td4:C (1.76) BS03 UJD N/A GO:0004735 ... P32322 39133178
    870276 8td4:D (1.76) BS01 UJD N/A GO:0004735 ... P32322 39133178
    870277 8td4:D (1.76) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870278 8td4:D (1.76) BS03 UJD N/A GO:0004735 ... P32322 39133178
    870279 8td4:E (1.76) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870280 8td4:E (1.76) BS02 UJD N/A GO:0004735 ... P32322 39133178
    870281 8td5:A (1.81) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870282 8td5:A (1.81) BS02 UJP N/A GO:0004735 ... P32322 39133178
    870283 8td5:B (1.81) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870284 8td5:B (1.81) BS02 UJP N/A GO:0004735 ... P32322 39133178
    870285 8td5:C (1.81) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870286 8td5:C (1.81) BS02 UJP N/A GO:0004735 ... P32322 39133178
    870287 8td5:D (1.81) BS01 UJP N/A GO:0004735 ... P32322 39133178
    870288 8td5:D (1.81) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870289 8td5:D (1.81) BS03 UJP N/A GO:0004735 ... P32322 39133178
    870290 8td5:E (1.81) BS01 UJP N/A GO:0004735 ... P32322 39133178
    870291 8td6:A (2.08) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870292 8td6:B (2.08) BS01 MTG N/A GO:0004735 ... P32322 39133178
    870293 8td6:B (2.08) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870294 8td6:C (2.08) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870295 8td6:C (2.08) BS02 MTG N/A GO:0004735 ... P32322 39133178
    870296 8td6:C (2.08) BS03 MTG N/A GO:0004735 ... P32322 39133178
    870297 8td6:D (2.08) BS01 MTG N/A GO:0004735 ... P32322 39133178
    870298 8td6:D (2.08) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870299 8td6:D (2.08) BS03 MTG N/A GO:0004735 ... P32322 39133178
    870300 8td6:E (2.08) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870301 8td7:A (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    870302 8td7:B (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    870303 8td7:B (1.61) BS02 LHV N/A GO:0004735 ... P32322 39133178
    870304 8td7:C (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    870305 8td7:D (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    870306 8td7:E (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    870307 8td8:A (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    870308 8td8:A (1.71) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870309 8td8:B (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    870310 8td8:B (1.71) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870311 8td8:C (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    870312 8td8:C (1.71) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870313 8td8:C (1.71) BS03 G8I N/A GO:0004735 ... P32322 39133178
    870314 8td8:D (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    870315 8td8:D (1.71) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870316 8td8:E (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    870317 8td9:A (1.75) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870318 8td9:A (1.75) BS02 YCP N/A GO:0004735 ... P32322 39133178
    870319 8td9:A (1.75) BS03 YCP N/A GO:0004735 ... P32322 39133178
    870320 8td9:B (1.75) BS01 YCP N/A GO:0004735 ... P32322 39133178
    870321 8td9:B (1.75) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870322 8td9:B (1.75) BS03 YCP N/A GO:0004735 ... P32322 39133178
    870323 8td9:C (1.75) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870324 8td9:C (1.75) BS02 YCP N/A GO:0004735 ... P32322 39133178
    870325 8td9:C (1.75) BS03 YCP N/A GO:0004735 ... P32322 39133178
    870326 8td9:D (1.75) BS01 YCP N/A GO:0004735 ... P32322 39133178
    870327 8td9:D (1.75) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870328 8td9:D (1.75) BS03 YCP N/A GO:0004735 ... P32322 39133178
    870329 8td9:E (1.75) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870330 8td9:E (1.75) BS02 YCP N/A GO:0004735 ... P32322 39133178
    870331 8tdb:A (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870332 8tdb:A (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    870333 8tdb:B (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870334 8tdb:B (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    870335 8tdb:C (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870336 8tdb:C (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    870337 8tdb:D (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870338 8tdb:D (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    870339 8tdb:E (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870340 8tdb:E (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    870341 8tdc:A (1.8) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870342 8tdc:A (1.8) BS02 GIW N/A GO:0004735 ... P32322 39133178
    870343 8tdc:B (1.8) BS01 GIW N/A GO:0004735 ... P32322 39133178
    870344 8tdc:B (1.8) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870345 8tdc:C (1.8) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870346 8tdc:C (1.8) BS02 GIW N/A GO:0004735 ... P32322 39133178
    870347 8tdc:D (1.8) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870348 8tdc:D (1.8) BS02 GIW N/A GO:0004735 ... P32322 39133178
    870349 8tdc:E (1.8) BS01 GIW N/A GO:0004735 ... P32322 39133178
    870350 8tdd:A (1.91) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870351 8tdd:A (1.91) BS02 SJU N/A GO:0004735 ... P32322 39133178
    870352 8tdd:B (1.91) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870353 8tdd:B (1.91) BS02 SJU N/A GO:0004735 ... P32322 39133178
    870354 8tdd:C (1.91) BS01 NAI N/A GO:0004735 ... P32322 39133178
    870355 8tdd:C (1.91) BS02 SJU N/A GO:0004735 ... P32322 39133178
    870356 8tdd:D (1.91) BS01 SJU N/A GO:0004735 ... P32322 39133178
    870357 8tdd:D (1.91) BS02 NAI N/A GO:0004735 ... P32322 39133178
    870358 8tde:A (1.85) BS01 GLC ? GO:0016787 ... Q8A5T1 38898276
    870359 8tdf:A (2.1) BS01 NAD ? N/A N/A 38898276
    870360 8tdf:B (2.1) BS01 NAD ? N/A N/A 38898276
    870361 8tdf:C (2.1) BS01 NAD ? N/A N/A 38898276
    870362 8tdf:D (2.1) BS01 NAD ? N/A N/A 38898276
    870363 8tdh:A (2.95) BS01 GLC N/A N/A N/A 38898276
    870364 8tdh:A (2.95) BS02 GLC N/A N/A N/A 38898276
    870365 8tdh:A (2.95) BS03 GLC N/A N/A N/A 38898276
    870366 8tdh:A (2.95) BS04 GLC N/A N/A N/A 38898276
    870367 8tdh:A (2.95) BS05 GLC N/A N/A N/A 38898276
    870368 8tdh:A (2.95) BS06 NAD N/A N/A N/A 38898276
    870369 8tdh:B (2.95) BS01 GLC N/A N/A N/A 38898276
    870370 8tdh:B (2.95) BS02 GLC N/A N/A N/A 38898276
    870371 8tdh:B (2.95) BS03 GLC N/A N/A N/A 38898276
    870372 8tdh:B (2.95) BS04 GLC N/A N/A N/A 38898276
    870373 8tdh:B (2.95) BS05 GLC N/A N/A N/A 38898276
    870374 8tdh:B (2.95) BS06 GLC N/A N/A N/A 38898276
    870375 8tdh:B (2.95) BS07 GLC N/A N/A N/A 38898276
    870376 8tdh:B (2.95) BS08 GLC N/A N/A N/A 38898276
    870377 8tdh:B (2.95) BS09 GLC N/A N/A N/A 38898276
    870378 8tdh:B (2.95) BS10 NAD N/A N/A N/A 38898276
    870379 8tdh:C (2.95) BS01 GLC N/A N/A N/A 38898276
    870380 8tdh:C (2.95) BS02 GLC N/A N/A N/A 38898276
    870381 8tdh:C (2.95) BS03 GLC N/A N/A N/A 38898276
    870382 8tdh:C (2.95) BS04 GLC N/A N/A N/A 38898276
    870383 8tdh:C (2.95) BS05 GLC N/A N/A N/A 38898276
    870384 8tdh:C (2.95) BS06 GLC N/A N/A N/A 38898276
    870385 8tdh:C (2.95) BS07 GLC N/A N/A N/A 38898276
    870386 8tdh:C (2.95) BS08 GLC N/A N/A N/A 38898276
    870387 8tdh:C (2.95) BS09 NAD N/A N/A N/A 38898276
    870388 8tdh:D (2.95) BS01 GLC N/A N/A N/A 38898276
    870389 8tdh:D (2.95) BS02 GLC N/A N/A N/A 38898276
    870390 8tdh:D (2.95) BS03 GLC N/A N/A N/A 38898276
    870391 8tdh:D (2.95) BS04 GLC N/A N/A N/A 38898276
    870392 8tdh:D (2.95) BS05 GLC N/A N/A N/A 38898276
    870393 8tdh:D (2.95) BS06 GLC N/A N/A N/A 38898276
    870394 8tdh:D (2.95) BS07 NAD N/A N/A N/A 38898276
    870395 8tdi:A (2.6) BS01 NAD N/A N/A N/A 38898276
    870396 8tdi:B (2.6) BS01 NAD N/A N/A N/A 38898276
    870397 8tdi:C (2.6) BS01 NAD N/A N/A N/A 38898276
    870398 8tdi:D (2.6) BS01 NAD N/A N/A N/A 38898276
    870399 8tdi:E (2.6) BS01 NAD N/A N/A N/A 38898276
    870400 8tdi:F (2.6) BS01 NAD N/A N/A N/A 38898276
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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