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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    869601 8t8c:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    869602 8t8c:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 37433044
    869603 8t8c:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 37433044
    869604 8t8c:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 37433044
    869605 8t8c:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 37433044
    869606 8t8c:1Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    869607 8t8c:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 37433044
    869608 8t8c:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 37433044
    869609 8t8c:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 37433044
    869610 8t8c:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 37433044
    869611 8t8c:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    869612 8t8c:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    869613 8t8c:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 37433044
    869614 8t8c:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    869615 8t8c:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    869616 8t8c:1T (2.6) BS01 rna ? GO:0003735 ... P60490 37433044
    869617 8t8c:1T (2.6) BS02 rna ? GO:0003735 ... P60490 37433044
    869618 8t8c:1U (2.6) BS01 rna ? GO:0000027 ... P60491 37433044
    869619 8t8c:1U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    869620 8t8c:1U (2.6) BS03 MG ? GO:0000027 ... P60491 37433044
    869621 8t8c:1U (2.6) BS04 MG ? GO:0000027 ... P60491 37433044
    869622 8t8c:1U (2.6) BS05 MG ? GO:0000027 ... P60491 37433044
    869623 8t8c:1U (2.6) BS06 MG ? GO:0000027 ... P60491 37433044
    869624 8t8c:1U (2.6) BS07 MG ? GO:0000027 ... P60491 37433044
    869625 8t8c:1V (2.6) BS01 rna ? GO:0003723 ... P60492 37433044
    869626 8t8c:1V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    869627 8t8c:1V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    869628 8t8c:1V (2.6) BS04 MG ? GO:0003723 ... P60492 37433044
    869629 8t8c:1V (2.6) BS05 MG ? GO:0003723 ... P60492 37433044
    869630 8t8c:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    869631 8t8c:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    869632 8t8c:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    869633 8t8c:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    869634 8t8c:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    869635 8t8c:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    869636 8t8c:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    869637 8t8c:1b (2.6) BS01 rna ? GO:0003735 ... P80371 37433044
    869638 8t8c:1b (2.6) BS02 MG ? GO:0003735 ... P80371 37433044
    869639 8t8c:1c (2.6) BS01 rna ? GO:0003676 ... P80372 37433044
    869640 8t8c:1d (2.6) BS01 rna ? GO:0003723 ... P80373 37433044
    869641 8t8c:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    869642 8t8c:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    869643 8t8c:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 37433044
    869644 8t8c:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    869645 8t8c:1g (2.6) BS01 rna ? GO:0000028 ... P17291 37433044
    869646 8t8c:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    869647 8t8c:1i (2.6) BS01 rna ? GO:0000049 ... P80374 37433044
    869648 8t8c:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    869649 8t8c:1k (2.6) BS01 rna ? GO:0003735 ... P80376 37433044
    869650 8t8c:1k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    869651 8t8c:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    869652 8t8c:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 37433044
    869653 8t8c:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 37433044
    869654 8t8c:1m (2.6) BS01 rna ? GO:0000049 ... P80377 37433044
    869655 8t8c:1m (2.6) BS02 MG ? GO:0000049 ... P80377 37433044
    869656 8t8c:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    869657 8t8c:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    869658 8t8c:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    869659 8t8c:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    869660 8t8c:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    869661 8t8c:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    869662 8t8c:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    869663 8t8c:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    869664 8t8c:1t (2.6) BS01 rna ? GO:0003723 ... P80380 37433044
    869665 8t8c:1t (2.6) BS02 MG ? GO:0003723 ... P80380 37433044
    869666 8t8c:1y (2.6) BS01 rna ? GO:0005515 ... P0AD49 37433044
    869667 8t8c:1y (2.6) BS02 MG ? GO:0005515 ... P0AD49 37433044
    869668 8t8c:20 (2.6) BS01 rna ? GO:0003735 ... P60493 37433044
    869669 8t8c:20 (2.6) BS02 rna ? GO:0003735 ... P60493 37433044
    869670 8t8c:20 (2.6) BS03 MG ? GO:0003735 ... P60493 37433044
    869671 8t8c:21 (2.6) BS01 rna ? GO:0003735 ... P60494 37433044
    869672 8t8c:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    869673 8t8c:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    869674 8t8c:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    869675 8t8c:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    869676 8t8c:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    869677 8t8c:25 (2.6) BS01 rna ? GO:0003735 ... P80339 37433044
    869678 8t8c:25 (2.6) BS02 MG ? GO:0003735 ... P80339 37433044
    869679 8t8c:25 (2.6) BS03 MG ? GO:0003735 ... P80339 37433044
    869680 8t8c:25 (2.6) BS04 ZN ? GO:0003735 ... P80339 37433044
    869681 8t8c:26 (2.6) BS01 rna ? GO:0000049 ... P35871 37433044
    869682 8t8c:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 37433044
    869683 8t8c:27 (2.6) BS01 rna ? GO:0003735 ... P80340 37433044
    869684 8t8c:27 (2.6) BS02 MG ? GO:0003735 ... P80340 37433044
    869685 8t8c:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    869686 8t8c:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    869687 8t8c:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    869688 8t8c:2D (2.6) BS01 rna ? GO:0002181 ... P60405 37433044
    869689 8t8c:2D (2.6) BS02 rna ? GO:0002181 ... P60405 37433044
    869690 8t8c:2D (2.6) BS03 MG ? GO:0002181 ... P60405 37433044
    869691 8t8c:2D (2.6) BS04 MG ? GO:0002181 ... P60405 37433044
    869692 8t8c:2D (2.6) BS05 MG ? GO:0002181 ... P60405 37433044
    869693 8t8c:2D (2.6) BS06 MG ? GO:0002181 ... P60405 37433044
    869694 8t8c:2D (2.6) BS07 MG ? GO:0002181 ... P60405 37433044
    869695 8t8c:2D (2.6) BS08 MG ? GO:0002181 ... P60405 37433044
    869696 8t8c:2D (2.6) BS09 MG ? GO:0002181 ... P60405 37433044
    869697 8t8c:2D (2.6) BS10 MG ? GO:0002181 ... P60405 37433044
    869698 8t8c:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    869699 8t8c:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    869700 8t8c:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    869701 8t8c:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    869702 8t8c:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    869703 8t8c:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 37433044
    869704 8t8c:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    869705 8t8c:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    869706 8t8c:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    869707 8t8c:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    869708 8t8c:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    869709 8t8c:2I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 37433044
    869710 8t8c:2N (2.6) BS01 rna ? GO:0003729 ... P60488 37433044
    869711 8t8c:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    869712 8t8c:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    869713 8t8c:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    869714 8t8c:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 37433044
    869715 8t8c:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 37433044
    869716 8t8c:2Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    869717 8t8c:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    869718 8t8c:2R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    869719 8t8c:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    869720 8t8c:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    869721 8t8c:2T (2.6) BS01 rna ? GO:0003735 ... P60490 37433044
    869722 8t8c:2T (2.6) BS02 rna ? GO:0003735 ... P60490 37433044
    869723 8t8c:2U (2.6) BS01 rna ? GO:0000027 ... P60491 37433044
    869724 8t8c:2U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    869725 8t8c:2V (2.6) BS01 rna ? GO:0003723 ... P60492 37433044
    869726 8t8c:2V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    869727 8t8c:2V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    869728 8t8c:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    869729 8t8c:2X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    869730 8t8c:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    869731 8t8c:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    869732 8t8c:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    869733 8t8c:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    869734 8t8c:2b (2.6) BS01 rna ? GO:0003735 ... P80371 37433044
    869735 8t8c:2c (2.6) BS01 rna ? GO:0003676 ... P80372 37433044
    869736 8t8c:2d (2.6) BS01 rna ? GO:0003723 ... P80373 37433044
    869737 8t8c:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    869738 8t8c:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    869739 8t8c:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    869740 8t8c:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 37433044
    869741 8t8c:2g (2.6) BS01 rna ? GO:0000028 ... P17291 37433044
    869742 8t8c:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    869743 8t8c:2i (2.6) BS01 rna ? GO:0000049 ... P80374 37433044
    869744 8t8c:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    869745 8t8c:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 37433044
    869746 8t8c:2k (2.6) BS01 rna ? GO:0003735 ... P80376 37433044
    869747 8t8c:2k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    869748 8t8c:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    869749 8t8c:2m (2.6) BS01 rna ? GO:0000049 ... P80377 37433044
    869750 8t8c:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    869751 8t8c:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    869752 8t8c:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    869753 8t8c:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    869754 8t8c:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    869755 8t8c:2q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    869756 8t8c:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    869757 8t8c:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    869758 8t8c:2t (2.6) BS01 rna ? GO:0003723 ... P80380 37433044
    869759 8t8c:2t (2.6) BS02 MG ? GO:0003723 ... P80380 37433044
    869760 8t8c:2y (2.6) BS01 rna ? GO:0005515 ... P0AD49 37433044
    869761 8t8g:A (1.5) BS01 peptide ? N/A Q99ZN4 38179192
    869762 8t8m:A (3.0) BS01 QUS ? GO:0004930 ... P41594 38632403
    869763 8t8m:B (3.0) BS01 QUS ? GO:0004930 ... P41594 38632403
    869764 8t8n:A (2.32) BS01 074 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A P27282 37515189
    869765 8t8q:A (2.27) BS01 ZJX 3.1.3.48 GO:0004725 ... Q06124 37774359
    869766 8t8q:B (2.27) BS01 ZJX 3.1.3.48 GO:0004725 ... Q06124 37774359
    869767 8t8r:A (2.87) BS01 peptide N/A N/A Q99523 N/A
    869768 8t8s:A (2.99) BS01 peptide N/A N/A Q99523 N/A
    869769 8t8s:B (2.99) BS01 peptide N/A N/A Q99523 N/A
    869770 8t8u:A (2.01) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869771 8t8u:A (2.01) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    869772 8t8v:A (1.96) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869773 8t8v:A (1.96) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    869774 8t8w:A (2.0) BS01 ATP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869775 8t8x:A (2.59) BS01 ANP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869776 8t8x:A (2.59) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    869777 8t8y:A (2.5) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869778 8t8y:A (2.5) BS02 I3P ? GO:0000828 ... A0A3G4ZNY6 38216735
    869779 8t8z:A (2.6) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869780 8t8z:A (2.6) BS02 ZNU ? GO:0000828 ... A0A3G4ZNY6 38216735
    869781 8t90:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869782 8t90:A (2.3) BS02 ZNZ ? GO:0000828 ... A0A3G4ZNY6 38216735
    869783 8t91:A (2.56) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869784 8t91:A (2.56) BS02 IHP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869785 8t92:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869786 8t92:A (2.3) BS02 XID ? GO:0000828 ... A0A3G4ZNY6 38216735
    869787 8t92:A (2.3) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    869788 8t93:A (1.95) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869789 8t93:A (1.95) BS02 ZNQ ? GO:0000828 ... A0A3G4ZNY6 38216735
    869790 8t94:A (2.11) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869791 8t94:A (2.11) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869792 8t94:A (2.11) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869793 8t95:A (2.61) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869794 8t95:A (2.61) BS02 I4P ? GO:0000828 ... A0A3G4ZNY6 38216735
    869795 8t96:A (2.36) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869796 8t96:A (2.36) BS02 K7V ? GO:0000828 ... A0A3G4ZNY6 38216735
    869797 8t96:A (2.36) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    869798 8t97:A (2.46) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    869799 8t97:A (2.46) BS02 KGN ? GO:0000828 ... A0A3G4ZNY6 38216735
    869800 8t97:A (2.46) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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