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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868801 8t4j:B (3.9) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    868802 8t4m:A (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    868803 8t4m:B (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    868804 8t4m:C (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    868805 8t4m:D (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    868806 8t4o:A (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    868807 8t4o:A (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    868808 8t4o:A (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    868809 8t4o:B (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    868810 8t4o:B (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    868811 8t4o:B (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    868812 8t4p:A (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    868813 8t4p:A (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    868814 8t4p:A (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    868815 8t4p:B (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    868816 8t4p:B (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    868817 8t4p:B (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    868818 8t4q:A (2.07) BS01 FE N/A N/A P09528 N/A
    868819 8t4q:B (2.07) BS01 FE N/A N/A P09528 N/A
    868820 8t4q:C (2.07) BS01 FE N/A N/A P09528 N/A
    868821 8t4q:D (2.07) BS01 FE N/A N/A P09528 N/A
    868822 8t4q:E (2.07) BS01 FE N/A N/A P09528 N/A
    868823 8t4q:F (2.07) BS01 FE N/A N/A P09528 N/A
    868824 8t4q:G (2.07) BS01 FE N/A N/A P09528 N/A
    868825 8t4q:H (2.07) BS01 FE N/A N/A P09528 N/A
    868826 8t4q:I (2.07) BS01 FE N/A N/A P09528 N/A
    868827 8t4q:J (2.07) BS01 FE N/A N/A P09528 N/A
    868828 8t4q:K (2.07) BS01 FE N/A N/A P09528 N/A
    868829 8t4q:L (2.07) BS01 FE N/A N/A P09528 N/A
    868830 8t4q:M (2.07) BS01 FE N/A N/A P09528 N/A
    868831 8t4q:N (2.07) BS01 FE N/A N/A P09528 N/A
    868832 8t4q:O (2.07) BS01 FE N/A N/A P09528 N/A
    868833 8t4q:P (2.07) BS01 FE N/A N/A P09528 N/A
    868834 8t4q:Q (2.07) BS01 FE N/A N/A P09528 N/A
    868835 8t4q:R (2.07) BS01 FE N/A N/A P09528 N/A
    868836 8t4q:S (2.07) BS01 FE N/A N/A P09528 N/A
    868837 8t4q:T (2.07) BS01 FE N/A N/A P09528 N/A
    868838 8t4q:U (2.07) BS01 FE N/A N/A P09528 N/A
    868839 8t4q:V (2.07) BS01 FE N/A N/A P09528 N/A
    868840 8t4q:W (2.07) BS01 FE N/A N/A P09528 N/A
    868841 8t4q:X (2.07) BS01 FE N/A N/A P09528 N/A
    868842 8t4r:A (1.2) BS01 peptide ? GO:0003677 ... P55895 38266163
    868843 8t4r:A (1.2) BS02 ZN ? GO:0003677 ... P55895 38266163
    868844 8t4r:A (1.2) BS03 ZN ? GO:0003677 ... P55895 38266163
    868845 8t4s:A (2.6) BS01 rna ? GO:0000028 ... P08865 37733586
    868846 8t4s:B (2.6) BS01 rna ? GO:0002181 ... P61247 37733586
    868847 8t4s:C (2.6) BS01 rna ? GO:0002181 ... P15880 37733586
    868848 8t4s:C (2.6) BS02 peptide ? GO:0002181 ... P15880 37733586
    868849 8t4s:D (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37733586
    868850 8t4s:D (2.6) BS02 peptide 4.2.99.18 GO:0000977 ... P23396 37733586
    868851 8t4s:E (2.6) BS01 rna ? GO:0002181 ... P62701 37733586
    868852 8t4s:F (2.6) BS01 rna ? GO:0000028 ... P46782 37733586
    868853 8t4s:G (2.6) BS01 rna ? GO:0000082 ... P62753 37733586
    868854 8t4s:H (2.6) BS01 rna ? GO:0001843 ... P62081 37733586
    868855 8t4s:I (2.6) BS01 rna ? GO:0000462 ... P62241 37733586
    868856 8t4s:J (2.6) BS01 rna ? GO:0002181 ... P46781 37733586
    868857 8t4s:K (2.6) BS01 rna ? GO:0002181 ... P46783 37733586
    868858 8t4s:L (2.6) BS01 rna ? GO:0002181 ... P62280 37733586
    868859 8t4s:M (2.6) BS01 rna ? GO:0002181 ... P25398 37733586
    868860 8t4s:N (2.6) BS01 rna ? GO:0002181 ... P62277 37733586
    868861 8t4s:O (2.6) BS01 rna ? GO:0000028 ... P62263 37733586
    868862 8t4s:P (2.6) BS01 rna ? GO:0000028 ... P62841 37733586
    868863 8t4s:Q (2.6) BS01 rna ? GO:0000462 ... P62249 37733586
    868864 8t4s:R (2.6) BS01 rna ? GO:0002181 ... P08708 37733586
    868865 8t4s:S (2.6) BS01 rna ? GO:0002181 ... P62269 37733586
    868866 8t4s:T (2.6) BS01 rna ? GO:0000028 ... P39019 37733586
    868867 8t4s:U (2.6) BS01 rna ? GO:0002181 ... P60866 37733586
    868868 8t4s:W (2.6) BS01 rna ? GO:0002181 ... P62244 37733586
    868869 8t4s:X (2.6) BS01 rna ? GO:0002181 ... P62266 37733586
    868870 8t4s:Y (2.6) BS01 rna ? GO:0002181 ... P62847 37733586
    868871 8t4s:Z (2.6) BS01 rna ? GO:0002181 ... P62851 37733586
    868872 8t4s:a (2.6) BS01 rna ? GO:0002181 ... P62854 37733586
    868873 8t4s:a (2.6) BS02 ZN ? GO:0002181 ... P62854 37733586
    868874 8t4s:b (2.6) BS01 rna ? GO:0000028 ... P42677 37733586
    868875 8t4s:c (2.6) BS01 rna ? GO:0000028 ... P62857 37733586
    868876 8t4s:d (2.6) BS01 rna ? GO:0002181 ... P62273 37733586
    868877 8t4s:d (2.6) BS02 ZN ? GO:0002181 ... P62273 37733586
    868878 8t4s:e (2.6) BS01 rna ? GO:0002181 ... P62861 37733586
    868879 8t4s:f (2.6) BS01 rna ? GO:0002181 ... P62979 37733586
    868880 8t4s:f (2.6) BS02 ZN ? GO:0002181 ... P62979 37733586
    868881 8t4s:g (2.6) BS01 rna ? GO:0001891 ... P63244 37733586
    868882 8t4v:A (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    868883 8t4v:A (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    868884 8t4v:B (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    868885 8t4v:B (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    868886 8t4y:A (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    868887 8t4y:B (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    868888 8t4y:C (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    868889 8t4y:D (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    868890 8t4z:A (2.691) BS01 Y73 N/A N/A P11609 39141352
    868891 8t50:A (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    868892 8t50:B (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    868893 8t50:C (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    868894 8t50:D (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    868895 8t51:A (1.9) BS01 peptide N/A N/A N/A N/A
    868896 8t51:B (1.9) BS01 peptide N/A N/A N/A N/A
    868897 8t51:B (1.9) BS02 ZN N/A N/A N/A N/A
    868898 8t51:B (1.9) BS03 ZN N/A N/A N/A N/A
    868899 8t51:C (1.9) BS01 peptide N/A N/A N/A N/A
    868900 8t51:D (1.9) BS01 peptide N/A N/A N/A N/A
    868901 8t52:A (2.07) BS01 QD6 N/A N/A P12497 38328097
    868902 8t55:A (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    868903 8t55:B (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    868904 8t55:C (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    868905 8t56:A (2.8) BS01 peptide ? GO:0005227 ... Q5XEZ5 38103547
    868906 8t56:A (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    868907 8t56:A (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    868908 8t56:A (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    868909 8t56:A (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    868910 8t56:B (2.8) BS01 peptide ? GO:0005227 ... Q5XEZ5 38103547
    868911 8t56:B (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    868912 8t56:B (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    868913 8t56:B (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    868914 8t56:B (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    868915 8t56:D (2.8) BS01 CLR N/A N/A N/A 38103547
    868916 8t56:D (2.8) BS02 CLR N/A N/A N/A 38103547
    868917 8t56:E (2.8) BS01 peptide N/A N/A N/A 38103547
    868918 8t56:E (2.8) BS02 LBN N/A N/A N/A 38103547
    868919 8t56:E (2.8) BS03 CLR N/A N/A N/A 38103547
    868920 8t56:H (2.8) BS01 CLR N/A N/A N/A 38103547
    868921 8t56:H (2.8) BS02 CLR N/A N/A N/A 38103547
    868922 8t56:I (2.8) BS01 peptide N/A N/A N/A 38103547
    868923 8t56:I (2.8) BS02 LBN N/A N/A N/A 38103547
    868924 8t56:I (2.8) BS03 CLR N/A N/A N/A 38103547
    868925 8t57:A (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    868926 8t57:A (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    868927 8t57:B (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    868928 8t57:B (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    868929 8t59:A (2.0) BS01 peptide N/A N/A N/A N/A
    868930 8t59:B (2.0) BS01 peptide N/A N/A N/A N/A
    868931 8t59:B (2.0) BS02 ZN N/A N/A N/A N/A
    868932 8t59:B (2.0) BS03 ZN N/A N/A N/A N/A
    868933 8t59:B (2.0) BS04 ZN N/A N/A N/A N/A
    868934 8t59:C (2.0) BS01 peptide N/A N/A N/A N/A
    868935 8t59:D (2.0) BS01 peptide N/A N/A N/A N/A
    868936 8t59:D (2.0) BS02 ZN N/A N/A N/A N/A
    868937 8t59:D (2.0) BS03 ZN N/A N/A N/A N/A
    868938 8t59:D (2.0) BS04 ZN N/A N/A N/A N/A
    868939 8t5a:A (1.93) BS01 WBV N/A N/A P12497 38328097
    868940 8t5b:A (2.08) BS01 QD6 N/A N/A P12497 N/A
    868941 8t5b:A (2.08) BS02 MG N/A N/A P12497 N/A
    868942 8t5b:A (2.08) BS03 QD6 N/A N/A P12497 N/A
    868943 8t5b:B (2.08) BS01 QD6 N/A N/A P12497 N/A
    868944 8t5b:B (2.08) BS02 QD6 N/A N/A P12497 N/A
    868945 8t5b:B (2.08) BS03 MG N/A N/A P12497 N/A
    868946 8t5b:C (2.08) BS01 QD6 N/A N/A P12497 N/A
    868947 8t5b:D (2.08) BS01 QD6 N/A N/A P12497 N/A
    868948 8t5c:I (4.7) BS01 MAN N/A N/A N/A 38177144
    868949 8t5c:L (4.7) BS01 MAN N/A N/A N/A 38177144
    868950 8t5c:L (4.7) BS02 MAN N/A N/A N/A 38177144
    868951 8t5d:0 (3.2) BS01 rna N/A N/A A0A828UBL8 38185325
    868952 8t5d:1 (3.2) BS01 rna N/A N/A N/A 38185325
    868953 8t5d:2 (3.2) BS01 rna N/A N/A B7MGC4 38185325
    868954 8t5d:3 (3.2) BS01 rna N/A N/A N/A 38185325
    868955 8t5d:4 (3.2) BS01 rna N/A N/A A0A0E2L017 38185325
    868956 8t5d:C (3.2) BS01 rna N/A N/A A0A1X3JB59 38185325
    868957 8t5d:D (3.2) BS01 rna N/A N/A P60438 38185325
    868958 8t5d:E (3.2) BS01 rna N/A N/A A1AGK6 38185325
    868959 8t5d:F (3.2) BS01 rna N/A N/A N/A 38185325
    868960 8t5d:F (3.2) BS02 rna N/A N/A N/A 38185325
    868961 8t5d:F (3.2) BS03 rna N/A N/A N/A 38185325
    868962 8t5d:G (3.2) BS01 rna N/A N/A N/A 38185325
    868963 8t5d:J (3.2) BS01 rna N/A N/A N/A 38185325
    868964 8t5d:K (3.2) BS01 rna N/A N/A C3SQZ2 38185325
    868965 8t5d:K (3.2) BS02 rna N/A N/A C3SQZ2 38185325
    868966 8t5d:L (3.2) BS01 rna N/A N/A A0A037Y8L6 38185325
    868967 8t5d:M (3.2) BS01 rna N/A N/A P0ADY7 38185325
    868968 8t5d:N (3.2) BS01 rna N/A N/A A0A2T1LEK9 38185325
    868969 8t5d:O (3.2) BS01 rna N/A N/A N/A 38185325
    868970 8t5d:O (3.2) BS02 rna N/A N/A N/A 38185325
    868971 8t5d:P (3.2) BS01 rna N/A N/A S1PSA3 38185325
    868972 8t5d:P (3.2) BS02 rna N/A N/A S1PSA3 38185325
    868973 8t5d:Q (3.2) BS01 rna N/A N/A N/A 38185325
    868974 8t5d:R (3.2) BS01 rna N/A N/A N/A 38185325
    868975 8t5d:S (3.2) BS01 rna N/A N/A P61175 38185325
    868976 8t5d:T (3.2) BS01 rna N/A N/A N/A 38185325
    868977 8t5d:U (3.2) BS01 rna N/A N/A N/A 38185325
    868978 8t5d:V (3.2) BS01 rna N/A N/A N/A 38185325
    868979 8t5d:W (3.2) BS01 rna N/A N/A C3SSG7 38185325
    868980 8t5d:W (3.2) BS02 rna N/A N/A C3SSG7 38185325
    868981 8t5d:X (3.2) BS01 rna N/A N/A A0A0E2KZD0 38185325
    868982 8t5d:Y (3.2) BS01 rna N/A N/A N/A 38185325
    868983 8t5d:Z (3.2) BS01 rna N/A N/A P0AG51 38185325
    868984 8t5d:Z (3.2) BS02 rna N/A N/A P0AG51 38185325
    868985 8t5d:a (3.2) BS01 rna N/A N/A N/A 38185325
    868986 8t5d:b (3.2) BS01 rna N/A N/A N/A 38185325
    868987 8t5d:b (3.2) BS02 rna N/A N/A N/A 38185325
    868988 8t5d:c (3.2) BS01 rna N/A N/A C3SR62 38185325
    868989 8t5d:d (3.2) BS01 rna N/A N/A N/A 38185325
    868990 8t5d:d (3.2) BS02 rna N/A N/A N/A 38185325
    868991 8t5d:e (3.2) BS01 rna N/A N/A P02358 38185325
    868992 8t5d:f (3.2) BS01 rna N/A N/A P02359 38185325
    868993 8t5d:g (3.2) BS01 rna N/A N/A A0A828U358 38185325
    868994 8t5d:h (3.2) BS01 rna N/A N/A N/A 38185325
    868995 8t5d:h (3.2) BS02 rna N/A N/A N/A 38185325
    868996 8t5d:i (3.2) BS01 rna N/A N/A A0A0H3EQD3 38185325
    868997 8t5d:j (3.2) BS01 rna N/A N/A P0A7R9 38185325
    868998 8t5d:k (3.2) BS01 rna N/A N/A N/A 38185325
    868999 8t5d:l (3.2) BS01 rna N/A N/A S1P5F8 38185325
    869000 8t5d:l (3.2) BS02 rna N/A N/A S1P5F8 38185325
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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