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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868601 8t1k:A (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    868602 8t1k:A (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    868603 8t1k:A (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    868604 8t1k:A (3.14) BS05 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    868605 8t1k:B (3.14) BS01 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    868606 8t1k:B (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    868607 8t1k:B (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    868608 8t1k:B (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    868609 8t1l:C (4.83) BS01 peptide N/A GO:0000151 ... Q921D4 N/A
    868610 8t1o:A (3.3) BS01 PIO ? GO:0005794 ... P17427 37364761
    868611 8t1o:M (3.3) BS01 peptide ? GO:0002092 ... P84091 37364761
    868612 8t1p:C (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    868613 8t1p:C (2.96) BS02 MG 7.6.2.- GO:0005524 ... O07550 37938578
    868614 8t1p:C (2.96) BS03 AOV 7.6.2.- GO:0005524 ... O07550 37938578
    868615 8t1p:D (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    868616 8t1p:D (2.96) BS02 AOV 7.6.2.- GO:0005524 ... O07549 37938578
    868617 8t1p:D (2.96) BS03 MG 7.6.2.- GO:0005524 ... O07549 37938578
    868618 8t1q:A (1.7) BS01 XYX 3.1.27.- N/A Q9UKF6 37967558
    868619 8t1q:A (1.7) BS02 FE 3.1.27.- N/A Q9UKF6 37967558
    868620 8t1q:A (1.7) BS03 FE 3.1.27.- N/A Q9UKF6 37967558
    868621 8t1r:A (2.2) BS01 XZC 3.1.27.- N/A Q9UKF6 37967558
    868622 8t1r:A (2.2) BS02 FE 3.1.27.- N/A Q9UKF6 37967558
    868623 8t1r:A (2.2) BS03 FE 3.1.27.- N/A Q9UKF6 37967558
    868624 8t1s:A (2.0) BS01 SAH ? GO:0008168 ... Q8EGW3 37799586
    868625 8t1s:A (2.0) BS02 ZN ? GO:0008168 ... Q8EGW3 37799586
    868626 8t1s:C (2.0) BS01 ZN ? GO:0008168 ... Q8EGW3 37799586
    868627 8t1s:C (2.0) BS02 SAH ? GO:0008168 ... Q8EGW3 37799586
    868628 8t1t:A (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    868629 8t1t:A (1.55) BS02 ZN ? GO:0008168 ... Q8EGW3 37799586
    868630 8t1t:C (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    868631 8t1t:C (1.55) BS02 ZN ? GO:0008168 ... Q8EGW3 37799586
    868632 8t1u:A (2.91) BS01 dna 2.1.1.37 GO:0008168 ... Q9M548 37926286
    868633 8t1u:A (2.91) BS02 dna 2.1.1.37 GO:0008168 ... Q9M548 37926286
    868634 8t1u:A (2.91) BS03 SAH 2.1.1.37 GO:0008168 ... Q9M548 37926286
    868635 8t1y:A (2.14) BS01 DAN 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    868636 8t1z:A (1.93) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    868637 8t24:A (2.29) BS01 FUD 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    868638 8t26:A (1.42) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    868639 8t27:A (1.41) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    868640 8t27:A (1.41) BS02 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    868641 8t27:A (1.41) BS03 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    868642 8t27:A (1.41) BS04 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    868643 8t29:A (3.13) BS01 rna N/A N/A N/A 38241435
    868644 8t29:B (3.13) BS01 rna N/A N/A N/A 38241435
    868645 8t2a:A (3.17) BS01 rna N/A N/A N/A 38241435
    868646 8t2a:B (3.17) BS01 rna N/A N/A N/A 38241435
    868647 8t2b:A (3.18) BS01 rna N/A N/A N/A 38241435
    868648 8t2b:B (3.18) BS01 rna N/A N/A N/A 38241435
    868649 8t2g:A () BS01 SAH N/A N/A N/A N/A
    868650 8t2g:A () BS02 CFF N/A N/A N/A N/A
    868651 8t2g:B () BS01 CFF N/A N/A N/A N/A
    868652 8t2g:B () BS02 SAH N/A N/A N/A N/A
    868653 8t2h:A (1.85) BS01 XIR 2.7.11.23
    2.7.12.1    		 GO:0004672 ... Q13627 N/A
    868654 8t2h:B (1.85) BS01 XIR 2.7.11.23
    2.7.12.1    		 GO:0004672 ... Q13627 N/A
    868655 8t2j:A (1.8) BS01 MG 3.1.3.16 N/A O15297 39002674
    868656 8t2j:A (1.8) BS02 MG 3.1.3.16 N/A O15297 39002674
    868657 8t2n:A (1.88) BS01 peptide ? GO:0000045 ... O95166 38512999
    868658 8t2n:C (1.88) BS01 peptide ? GO:0000045 ... O95166 38512999
    868659 8t2o:A (3.29) BS01 rna N/A N/A N/A 38241435
    868660 8t2o:B (3.29) BS01 rna N/A N/A N/A 38241435
    868661 8t2r:D (3.1) BS01 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    868662 8t2r:D (3.1) BS02 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    868663 8t2s:D (3.0) BS01 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    868664 8t2t:D (3.0) BS01 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    868665 8t2t:D (3.0) BS02 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    868666 8t2u:A (3.1) BS01 peptide ? GO:0001525 ... P08514 37443315
    868667 8t2u:A (3.1) BS02 CA ? GO:0001525 ... P08514 37443315
    868668 8t2u:A (3.1) BS03 CA ? GO:0001525 ... P08514 37443315
    868669 8t2u:A (3.1) BS04 CA ? GO:0001525 ... P08514 37443315
    868670 8t2u:A (3.1) BS05 CA ? GO:0001525 ... P08514 37443315
    868671 8t2u:B (3.1) BS01 peptide ? GO:0001618 ... P05106 37443315
    868672 8t2u:B (3.1) BS02 MG ? GO:0001618 ... P05106 37443315
    868673 8t2u:B (3.1) BS03 CA ? GO:0001618 ... P05106 37443315
    868674 8t2u:B (3.1) BS04 CA ? GO:0001618 ... P05106 37443315
    868675 8t2v:A (3.4) BS01 CA ? GO:0001525 ... P08514 37443315
    868676 8t2v:A (3.4) BS02 CA ? GO:0001525 ... P08514 37443315
    868677 8t2v:A (3.4) BS03 CA ? GO:0001525 ... P08514 37443315
    868678 8t2v:A (3.4) BS04 CA ? GO:0001525 ... P08514 37443315
    868679 8t2v:A (3.4) BS05 CA ? GO:0001525 ... P08514 37443315
    868680 8t2v:B (3.4) BS01 MG ? GO:0001618 ... P05106 37443315
    868681 8t2v:B (3.4) BS02 CA ? GO:0001618 ... P05106 37443315
    868682 8t2v:B (3.4) BS03 CA ? GO:0001618 ... P05106 37443315
    868683 8t31:A (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    868684 8t31:C (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    868685 8t31:E (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    868686 8t31:G (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    868687 8t31:I (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    868688 8t32:A (2.051) BS01 peptide ? GO:0000045 ... O95166 38726830
    868689 8t33:A (1.599) BS01 peptide ? GO:0000045 ... O95166 38726830
    868690 8t33:A (1.599) BS02 ZN ? GO:0000045 ... O95166 38726830
    868691 8t3k:C (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    868692 8t3k:D (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    868693 8t3l:A (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    868694 8t3l:B (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    868695 8t3l:C (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    868696 8t3l:D (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    868697 8t3m:A (3.5) BS01 85R ? GO:0005216 ... O35433 38698206
    868698 8t3m:B (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    868699 8t3m:C (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    868700 8t3m:C (3.5) BS02 NKN ? GO:0005216 ... O35433 38698206
    868701 8t3m:D (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    868702 8t3o:R (3.06) BS01 YN9 ? GO:0004930 ... Q5NUL3 38198545
    868703 8t3o:R (3.06) BS02 2Y5 ? GO:0004930 ... Q5NUL3 38198545
    868704 8t3p:A (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    868705 8t3p:B (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    868706 8t3q:R (3.14) BS01 HXA ? GO:0004930 ... Q5NUL3 38198545
    868707 8t3r:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    868708 8t3r:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    868709 8t3r:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    868710 8t3s:R (3.07) BS01 BUA ? GO:0004930 ... O15552 38198545
    868711 8t3s:R (3.07) BS02 CLR ? GO:0004930 ... O15552 38198545
    868712 8t3t:A (3.21) BS01 dna ? GO:0000786 ... P84233 37872231
    868713 8t3t:C (3.21) BS01 dna ? GO:0000786 ... P06897 37872231
    868714 8t3t:D (3.21) BS01 dna ? GO:0000786 ... P02281 37872231
    868715 8t3t:E (3.21) BS01 dna ? GO:0000786 ... P84233 37872231
    868716 8t3t:E (3.21) BS02 dna ? GO:0000786 ... P84233 37872231
    868717 8t3t:F (3.21) BS01 dna ? GO:0000786 ... P62799 37872231
    868718 8t3t:G (3.21) BS01 dna ? GO:0000786 ... P06897 37872231
    868719 8t3t:G (3.21) BS02 dna ? GO:0000786 ... P06897 37872231
    868720 8t3t:K (3.21) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868721 8t3t:K (3.21) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868722 8t3t:L (3.21) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868723 8t3t:L (3.21) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868724 8t3u:A (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    868725 8t3u:A (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    868726 8t3u:B (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    868727 8t3u:B (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    868728 8t3v:R (3.39) BS01 HXA ? GO:0004930 ... O14842 38198545
    868729 8t3w:A (3.25) BS01 dna ? GO:0000786 ... P84233 37872231
    868730 8t3w:A (3.25) BS02 dna ? GO:0000786 ... P84233 37872231
    868731 8t3w:B (3.25) BS01 dna ? GO:0000786 ... P62799 37872231
    868732 8t3w:B (3.25) BS02 dna ? GO:0000786 ... P62799 37872231
    868733 8t3w:C (3.25) BS01 dna ? GO:0000786 ... P06897 37872231
    868734 8t3w:C (3.25) BS02 dna ? GO:0000786 ... P06897 37872231
    868735 8t3w:D (3.25) BS01 dna ? GO:0000786 ... P02281 37872231
    868736 8t3w:E (3.25) BS01 dna ? GO:0000786 ... P84233 37872231
    868737 8t3w:E (3.25) BS02 dna ? GO:0000786 ... P84233 37872231
    868738 8t3w:F (3.25) BS01 dna ? GO:0000786 ... P62799 37872231
    868739 8t3w:G (3.25) BS01 dna ? GO:0000786 ... P06897 37872231
    868740 8t3w:G (3.25) BS02 dna ? GO:0000786 ... P06897 37872231
    868741 8t3w:H (3.25) BS01 dna ? GO:0000786 ... P02281 37872231
    868742 8t3w:K (3.25) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868743 8t3w:K (3.25) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868744 8t3w:L (3.25) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868745 8t3w:L (3.25) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868746 8t3x:A (2.73) BS01 dna N/A N/A D0VWU9 N/A
    868747 8t3x:A (2.73) BS02 dna N/A N/A D0VWU9 N/A
    868748 8t3x:A (2.73) BS03 9O7 N/A N/A D0VWU9 N/A
    868749 8t3x:A (2.73) BS04 MG N/A N/A D0VWU9 N/A
    868750 8t3y:A (3.47) BS01 dna ? GO:0000786 ... P84233 37872231
    868751 8t3y:A (3.47) BS02 dna ? GO:0000786 ... P84233 37872231
    868752 8t3y:B (3.47) BS01 dna ? GO:0000786 ... P62799 37872231
    868753 8t3y:B (3.47) BS02 dna ? GO:0000786 ... P62799 37872231
    868754 8t3y:C (3.47) BS01 dna ? GO:0000786 ... P06897 37872231
    868755 8t3y:C (3.47) BS02 dna ? GO:0000786 ... P06897 37872231
    868756 8t3y:D (3.47) BS01 dna ? GO:0000786 ... P02281 37872231
    868757 8t3y:E (3.47) BS01 dna ? GO:0000786 ... P84233 37872231
    868758 8t3y:E (3.47) BS02 dna ? GO:0000786 ... P84233 37872231
    868759 8t3y:F (3.47) BS01 dna ? GO:0000786 ... P62799 37872231
    868760 8t3y:G (3.47) BS01 dna ? GO:0000786 ... P06897 37872231
    868761 8t3y:G (3.47) BS02 dna ? GO:0000786 ... P06897 37872231
    868762 8t3y:H (3.47) BS01 dna ? GO:0000786 ... P02281 37872231
    868763 8t3y:K (3.47) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868764 8t3y:K (3.47) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868765 8t3y:L (3.47) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868766 8t3y:L (3.47) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    868767 8t41:A (1.45) BS01 ZN 3.4.11.2 GO:0004177 ... L7N655 N/A
    868768 8t41:A (1.45) BS02 MG 3.4.11.2 GO:0004177 ... L7N655 N/A
    868769 8t42:A (3.6) BS01 peptide 3.6.5.- GO:0000226 ... P68363 38658656
    868770 8t42:A (3.6) BS02 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    868771 8t42:A (3.6) BS03 MG 3.6.5.- GO:0000226 ... P68363 38658656
    868772 8t42:A (3.6) BS04 G2P 3.6.5.- GO:0000226 ... P68363 38658656
    868773 8t42:B (3.6) BS01 peptide ? GO:0000226 ... P07437 38658656
    868774 8t42:B (3.6) BS02 G2P ? GO:0000226 ... P07437 38658656
    868775 8t42:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    868776 8t42:E (3.6) BS02 MG ? GO:0000226 ... P07437 38658656
    868777 8t42:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    868778 8t44:A (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    868779 8t44:A (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    868780 8t44:B (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    868781 8t44:B (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    868782 8t44:B (3.12) BS03 CO3 ? GO:0005452 ... P02730 N/A
    868783 8t45:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    868784 8t45:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    868785 8t45:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    868786 8t47:A (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    868787 8t47:A (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    868788 8t47:B (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    868789 8t47:B (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    868790 8t4e:A (3.5) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    868791 8t4e:B (3.5) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    868792 8t4f:A (3.5) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    868793 8t4f:B (3.5) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    868794 8t4g:A (3.5) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    868795 8t4g:B (3.5) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    868796 8t4h:A (3.8) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    868797 8t4h:B (3.8) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    868798 8t4i:A (5.1) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    868799 8t4i:B (5.1) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    868800 8t4j:A (3.9) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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