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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    866601 8snh:I (2.7) BS03 HEM ? GO:0005886 ... Q9HVY5 37751552
    866602 8snh:I (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    866603 8snh:J (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    866604 8snh:J (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    866605 8snh:K (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    866606 8snh:K (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    866607 8snh:K (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    866608 8snh:M (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    866609 8snh:M (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    866610 8snh:N (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    866611 8snh:N (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    866612 8snh:N (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    866613 8snh:Z (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    866614 8snh:Z (2.7) BS02 I7Y 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    866615 8snh:Z (2.7) BS03 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    866616 8snj:A (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    866617 8snj:B (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    866618 8snj:C (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    866619 8snj:D (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    866620 8snj:E (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    866621 8snj:F (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    866622 8snk:A (1.85) BS01 ZN N/A GO:0046872 ... N/A 38408229
    866623 8snk:I (1.85) BS01 ZN N/A GO:0046872 ... N/A 38408229
    866624 8snl:A (2.78) BS01 ZN 3.4.24.86 N/A P78536 N/A
    866625 8snl:A (2.78) BS02 CA 3.4.24.86 N/A P78536 N/A
    866626 8snm:B (3.84) BS01 ZN 3.4.24.86 N/A P78536 N/A
    866627 8snm:B (3.84) BS02 CA 3.4.24.86 N/A P78536 N/A
    866628 8snn:A (2.32) BS01 CA 3.4.24.86 N/A P78536 N/A
    866629 8sno:A (2.78) BS01 CA 3.4.24.86 N/A P78536 N/A
    866630 8snx:A (3.4) BS01 rna 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... P28887 38123676
    866631 8sny:A (3.41) BS01 rna 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... P28887 38123676
    866632 8snz:A (2.17) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    866633 8snz:B (2.17) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    866634 8so0:C (2.79961) BS01 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    866635 8so0:C (2.79961) BS02 ZN 3.1.3.16 GO:0000159 ... P67775 38123684
    866636 8so1:A (2.05) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    866637 8so1:A (2.05) BS02 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    866638 8so1:A (2.05) BS03 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    866639 8so2:A (2.15) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    866640 8so2:A (2.15) BS02 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    866641 8so2:A (2.15) BS03 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    866642 8so2:A (2.15) BS04 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    866643 8so2:A (2.15) BS05 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    866644 8soa:A (3.32) BS01 ATP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    866645 8sob:A (3.9) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    866646 8soc:A (3.5) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    866647 8sod:A (3.4) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    866648 8soe:A (3.6) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    866649 8sog:A (1.13) BS01 CA 3.4.21.64 GO:0004252 ... P06873 37748828
    866650 8soj:A (3.8) BS01 ZN ? GO:0000723 ... P0AEX9
    Q2NKJ3    		 37215005
    866651 8soj:D (3.8) BS01 ZN ? GO:0000723 ... Q9NUX5 37215005
    866652 8sok:A (4.1) BS01 ZN ? GO:0000723 ... P0AEX9
    Q2NKJ3    		 37215005
    866653 8sok:D (4.1) BS01 dna ? GO:0000723 ... Q9NUX5 37215005
    866654 8sok:D (4.1) BS02 ZN ? GO:0000723 ... Q9NUX5 37215005
    866655 8son:A (1.63) BS01 30Y 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 N/A
    866656 8son:B (1.63) BS01 30Y 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 N/A
    866657 8soq:A (3.1) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    866658 8soq:A (3.1) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    866659 8soq:B (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    866660 8soq:C (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    866661 8soq:D (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    866662 8soq:E (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    866663 8sor:A (3.96) BS01 ADP 2.7.11.1 GO:0004672 ... Q99570 N/A
    866664 8sos:A (2.33) BS01 FO4 ? GO:0003677 ... P05412
    P15813    		 38040419
    866665 8sos:E (2.33) BS01 FO4 ? GO:0003677 ... P05412
    P15813    		 38040419
    866666 8sou:A (1.54) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 37748828
    866667 8sou:A (1.54) BS02 CA 3.4.21.64 GO:0004252 ... P06873 37748828
    866668 8sov:A (1.291) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 37748828
    866669 8sov:A (1.291) BS02 CA 3.4.21.64 GO:0004252 ... P06873 37748828
    866670 8sp0:A (3.33) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    866671 8sp0:A (3.33) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    866672 8sp0:B (3.33) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    866673 8sp0:B (3.33) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    866674 8sp0:E (3.33) BS01 dna ? GO:0007165 ... A0A316E683 37494956
    866675 8sp0:E (3.33) BS02 rna ? GO:0007165 ... A0A316E683 37494956
    866676 8sp0:F (3.33) BS01 dna ? GO:0003676 ... A0A316E3U6 37494956
    866677 8sp0:F (3.33) BS02 rna ? GO:0003676 ... A0A316E3U6 37494956
    866678 8sp1:F (1.62) BS01 dna ? GO:0003700 ... P17433 38042148
    866679 8sp1:F (1.62) BS02 dna ? GO:0003700 ... P17433 38042148
    866680 8sp2:G (2.2) BS01 NI N/A GO:0046872 ... N/A 38408229
    866681 8sp2:G (2.2) BS02 NI N/A GO:0046872 ... N/A 38408229
    866682 8sp2:H (2.2) BS01 NI N/A GO:0046872 ... N/A 38408229
    866683 8sp2:H (2.2) BS02 NI N/A GO:0046872 ... N/A 38408229
    866684 8sp2:I (2.2) BS01 NI N/A GO:0046872 ... N/A 38408229
    866685 8sp2:I (2.2) BS02 NI N/A GO:0046872 ... N/A 38408229
    866686 8sp2:J (2.2) BS01 NI N/A GO:0046872 ... N/A 38408229
    866687 8sp2:J (2.2) BS02 NI N/A GO:0046872 ... N/A 38408229
    866688 8sp3:A (3.52) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    866689 8sp3:A (3.52) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    866690 8sp3:B (3.52) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    866691 8sp3:B (3.52) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    866692 8sp3:B (3.52) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    866693 8sp3:E (3.52) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    866694 8sp3:E (3.52) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    866695 8sp3:F (3.52) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    866696 8sp3:F (3.52) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    866697 8sp3:F (3.52) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    866698 8sp4:A (2.401) BS01 AGS N/A N/A P60240 N/A
    866699 8sp5:A (2.23) BS01 MN 2.7.7.49 N/A O00370 38719805
    866700 8sp5:B (2.23) BS01 MN 2.7.7.49 N/A O00370 38719805
    866701 8sp6:A (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    866702 8sp6:A (1.45) BS02 peptide ? N/A Q8N8U2 N/A
    866703 8sp6:B (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    866704 8sp6:C (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    866705 8sp6:C (1.45) BS02 peptide ? N/A Q8N8U2 N/A
    866706 8sp6:D (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    866707 8sp6:E (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    866708 8sp6:E (1.45) BS02 peptide ? N/A Q8N8U2 N/A
    866709 8sp6:F (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    866710 8sp6:F (1.45) BS02 I9A ? N/A Q8N8U2 N/A
    866711 8sp7:A (1.83) BS01 AMH 2.7.7.49 N/A O00370 38719805
    866712 8sp8:A (2.79) BS01 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866713 8sp8:A (2.79) BS02 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866714 8sp8:A (2.79) BS03 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866715 8sp8:A (2.79) BS04 I8E ? GO:0005216 ... Q9H1D0 37532722
    866716 8sp8:A (2.79) BS05 I8E ? GO:0005216 ... Q9H1D0 37532722
    866717 8sp8:A (2.79) BS06 I8E ? GO:0005216 ... Q9H1D0 37532722
    866718 8sp8:B (2.79) BS01 I8E ? GO:0005216 ... Q9H1D0 37532722
    866719 8sp8:B (2.79) BS02 I8E ? GO:0005216 ... Q9H1D0 37532722
    866720 8sp8:B (2.79) BS03 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866721 8sp8:B (2.79) BS04 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866722 8sp8:B (2.79) BS05 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866723 8sp8:B (2.79) BS06 I8E ? GO:0005216 ... Q9H1D0 37532722
    866724 8sp8:C (2.79) BS01 I8E ? GO:0005216 ... Q9H1D0 37532722
    866725 8sp8:C (2.79) BS02 I8E ? GO:0005216 ... Q9H1D0 37532722
    866726 8sp8:C (2.79) BS03 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866727 8sp8:C (2.79) BS04 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866728 8sp8:C (2.79) BS05 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866729 8sp8:C (2.79) BS06 I8E ? GO:0005216 ... Q9H1D0 37532722
    866730 8sp8:D (2.79) BS01 I8E ? GO:0005216 ... Q9H1D0 37532722
    866731 8sp8:D (2.79) BS02 I8E ? GO:0005216 ... Q9H1D0 37532722
    866732 8sp8:D (2.79) BS03 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866733 8sp8:D (2.79) BS04 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866734 8sp8:D (2.79) BS05 Y01 ? GO:0005216 ... Q9H1D0 37532722
    866735 8sp8:D (2.79) BS06 I8E ? GO:0005216 ... Q9H1D0 37532722
    866736 8spc:A (1.871) BS01 HEM ? GO:0004497 ... A0A224AU14 37555759
    866737 8spd:A (2.9) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37770228
    866738 8spd:A (2.9) BS02 CL6 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37770228
    866739 8spe:C (2.3) BS01 ZN ? GO:0042981 ... Q07812 38088212
    866740 8spe:D (2.3) BS01 ZN ? GO:0042981 ... Q07812 38088212
    866741 8spe:J (2.3) BS01 ZN ? GO:0042981 ... Q07812 38088212
    866742 8spe:M (2.3) BS01 ZN ? GO:0042981 ... Q07812 38088212
    866743 8spg:A (2.1) BS01 ADP N/A N/A P60240 N/A
    866744 8sph:A (2.71) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 37578233
    866745 8sph:B (2.71) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 37578233
    866746 8spi:A (3.06) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 37578233
    866747 8spi:B (3.06) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 37578233
    866748 8spl:A (1.21) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 37748828
    866749 8spl:A (1.21) BS02 CA 3.4.21.64 GO:0004252 ... P06873 37748828
    866750 8spm:A (2.15) BS01 II1 ? GO:0005515 ... P33590 38740750
    866751 8spn:C (1.73) BS01 7TN 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 38539088
    866752 8spo:A (2.98) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    866753 8spo:A (2.98) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    866754 8spo:A (2.98) BS03 NAD ? GO:0007165 ... A0A316E683 37494956
    866755 8spo:B (2.98) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    866756 8spo:B (2.98) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    866757 8spo:E (2.98) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    866758 8spo:E (2.98) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    866759 8spo:E (2.98) BS03 NAD ? GO:0007165 ... A0A316E683 37494956
    866760 8spo:F (2.98) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    866761 8spo:F (2.98) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    866762 8spo:F (2.98) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    866763 8spo:I (2.98) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    866764 8spo:I (2.98) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    866765 8spo:I (2.98) BS03 NAD ? GO:0007165 ... A0A316E683 37494956
    866766 8spo:L (2.98) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    866767 8spo:L (2.98) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    866768 8spo:L (2.98) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    866769 8spo:M (2.98) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    866770 8spo:M (2.98) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    866771 8spo:M (2.98) BS03 NAD ? GO:0007165 ... A0A316E683 37494956
    866772 8spo:N (2.98) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    866773 8spo:N (2.98) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    866774 8spo:N (2.98) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    866775 8spp:A (1.89) BS01 HEM ? GO:0004497 ... A0A224AU14 37451485
    866776 8spq:A (3.26) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    866777 8spq:A (3.26) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    866778 8spq:A (3.26) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    866779 8spq:A (3.26) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    866780 8spq:A (3.26) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    866781 8spq:A (3.26) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    866782 8sps:A (3.0) BS01 dna ? GO:0000786 ... P68431 37327775
    866783 8sps:A (3.0) BS02 dna ? GO:0000786 ... P68431 37327775
    866784 8sps:B (3.0) BS01 dna ? GO:0000781 ... P62805 37327775
    866785 8sps:B (3.0) BS02 dna ? GO:0000781 ... P62805 37327775
    866786 8sps:C (3.0) BS01 dna ? GO:0000786 ... Q16777 37327775
    866787 8sps:C (3.0) BS02 dna ? GO:0000786 ... Q16777 37327775
    866788 8sps:D (3.0) BS01 dna ? GO:0000786 ... Q16778 37327775
    866789 8sps:E (3.0) BS01 dna ? GO:0000786 ... P68431 37327775
    866790 8sps:E (3.0) BS02 dna ? GO:0000786 ... P68431 37327775
    866791 8sps:F (3.0) BS01 dna ? GO:0000781 ... P62805 37327775
    866792 8sps:F (3.0) BS02 dna ? GO:0000781 ... P62805 37327775
    866793 8sps:G (3.0) BS01 dna ? GO:0000786 ... Q16777 37327775
    866794 8sps:G (3.0) BS02 dna ? GO:0000786 ... Q16777 37327775
    866795 8sps:H (3.0) BS01 dna ? GO:0000786 ... Q16778 37327775
    866796 8sps:H (3.0) BS02 dna ? GO:0000786 ... Q16778 37327775
    866797 8sps:L (3.0) BS01 dna ? GO:0000981 ... Q01860 37327775
    866798 8sps:L (3.0) BS02 dna ? GO:0000981 ... Q01860 37327775
    866799 8sps:M (3.0) BS01 dna ? GO:0000981 ... Q01860 37327775
    866800 8spu:A (2.8) BS01 dna ? GO:0000786 ... P68431 37327775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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