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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    864601 8sg8:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864602 8sg8:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    864603 8sg8:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864604 8sg8:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    864605 8sg8:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    864606 8sg8:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    864607 8sg8:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864608 8sg8:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864609 8sg8:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864610 8sg8:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    864611 8sg8:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    864612 8sg8:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    864613 8sg8:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    864614 8sg9:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    864615 8sg9:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864616 8sg9:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    864617 8sg9:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864618 8sg9:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    864619 8sg9:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864620 8sg9:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    864621 8sg9:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    864622 8sg9:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    864623 8sg9:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864624 8sg9:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864625 8sg9:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864626 8sg9:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    864627 8sg9:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    864628 8sg9:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    864629 8sg9:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    864630 8sg9:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    864631 8sg9:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    864632 8sg9:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864633 8sg9:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    864634 8sg9:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864635 8sg9:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    864636 8sg9:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864637 8sg9:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    864638 8sg9:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    864639 8sg9:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    864640 8sg9:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864641 8sg9:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864642 8sg9:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864643 8sg9:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    864644 8sg9:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    864645 8sg9:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    864646 8sg9:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    864647 8sgb:A (2.80002) BS01 FO4 ? GO:0003677 ... P15813 N/A
    864648 8sgc:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    864649 8sgc:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864650 8sgc:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    864651 8sgc:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864652 8sgc:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    864653 8sgc:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864654 8sgc:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    864655 8sgc:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    864656 8sgc:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    864657 8sgc:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864658 8sgc:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864659 8sgc:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864660 8sgc:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    864661 8sgc:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    864662 8sgc:Q (2.9) BS03 AF3 ? GO:0002199 ... P50990 37852256
    864663 8sgc:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    864664 8sgc:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    864665 8sgc:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    864666 8sgc:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    864667 8sgc:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864668 8sgc:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    864669 8sgc:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864670 8sgc:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    864671 8sgc:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864672 8sgc:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    864673 8sgc:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    864674 8sgc:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    864675 8sgc:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864676 8sgc:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864677 8sgc:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864678 8sgc:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    864679 8sgc:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    864680 8sgc:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    864681 8sgc:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    864682 8sgd:A (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    864683 8sgd:A (2.66) BS02 GTP ? GO:0000144 ... P25342 37315820
    864684 8sgd:B (2.66) BS01 GDP ? GO:0005525 ... P32457 37315820
    864685 8sgd:B (2.66) BS02 GTP ? GO:0005525 ... P32457 37315820
    864686 8sgd:C (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    864687 8sgd:C (2.66) BS02 GTP ? GO:0000144 ... P25342 37315820
    864688 8sgd:D (2.66) BS01 GDP ? GO:0005525 ... P32457 37315820
    864689 8sgd:D (2.66) BS02 GTP ? GO:0005525 ... P32457 37315820
    864690 8sge:A (1.509) BS01 ZWS ? N/A Q9Y2U9 38177675
    864691 8sge:B (1.509) BS01 ZWS ? N/A Q9Y2U9 38177675
    864692 8sgf:A (1.418) BS01 peptide ? N/A Q9Y2U9 38177675
    864693 8sgf:B (1.418) BS01 peptide ? N/A Q9Y2U9 38177675
    864694 8sgh:A (3.17) BS01 peptide ? GO:0003723 ... Q92973 37279758
    864695 8sgi:A (2.9) BS01 EKY ? GO:0005432 ... P32418 N/A
    864696 8sgi:A (2.9) BS02 CA ? GO:0005432 ... P32418 N/A
    864697 8sgi:A (2.9) BS03 CA ? GO:0005432 ... P32418 N/A
    864698 8sgi:A (2.9) BS04 CA ? GO:0005432 ... P32418 N/A
    864699 8sgi:A (2.9) BS05 CA ? GO:0005432 ... P32418 N/A
    864700 8sgi:A (2.9) BS06 CA ? GO:0005432 ... P32418 N/A
    864701 8sgi:A (2.9) BS07 CA ? GO:0005432 ... P32418 N/A
    864702 8sgj:A (3.1) BS01 CA ? GO:0005432 ... P32418 37794011
    864703 8sgj:A (3.1) BS02 CA ? GO:0005432 ... P32418 37794011
    864704 8sgj:A (3.1) BS03 CA ? GO:0005432 ... P32418 37794011
    864705 8sgj:A (3.1) BS04 CA ? GO:0005432 ... P32418 37794011
    864706 8sgj:A (3.1) BS05 CA ? GO:0005432 ... P32418 37794011
    864707 8sgj:A (3.1) BS06 CA ? GO:0005432 ... P32418 37794011
    864708 8sgj:A (3.1) BS07 NA ? GO:0005432 ... P32418 37794011
    864709 8sgj:A (3.1) BS08 NA ? GO:0005432 ... P32418 37794011
    864710 8sgj:A (3.1) BS09 NA ? GO:0005432 ... P32418 37794011
    864711 8sgk:A (3.7) BS01 LBV 2.7.13.3 GO:0000156 ... Q9RZA4 N/A
    864712 8sgk:B (3.7) BS01 LBV 2.7.13.3 GO:0000156 ... Q9RZA4 N/A
    864713 8sgl:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    864714 8sgl:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864715 8sgl:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    864716 8sgl:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864717 8sgl:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    864718 8sgl:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864719 8sgl:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    864720 8sgl:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    864721 8sgl:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    864722 8sgl:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864723 8sgl:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864724 8sgl:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864725 8sgl:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    864726 8sgl:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    864727 8sgl:Q (2.9) BS03 AF3 ? GO:0002199 ... P50990 37852256
    864728 8sgl:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    864729 8sgl:Z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    864730 8sgl:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    864731 8sgl:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864732 8sgl:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    864733 8sgl:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864734 8sgl:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    864735 8sgl:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864736 8sgl:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    864737 8sgl:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    864738 8sgl:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    864739 8sgl:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864740 8sgl:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864741 8sgl:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864742 8sgl:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    864743 8sgl:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    864744 8sgl:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    864745 8sgl:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    864746 8sgm:A (2.5) BS01 A1AHF ? N/A P15813 N/A
    864747 8sgn:G (2.2) BS01 FUC ? N/A P03200 N/A
    864748 8sgo:A (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    864749 8sgo:B (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    864750 8sgo:C (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    864751 8sgo:C (2.65) BS02 Q3G ? GO:0004888 ... P47870 37607940
    864752 8sgo:D (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    864753 8sgo:E (2.65) BS01 MAN ? GO:0004888 ... P18507 37607940
    864754 8sgo:E (2.65) BS02 A8W ? GO:0004888 ... P18507 37607940
    864755 8sgp:A (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    864756 8sgp:A (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    864757 8sgp:B (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    864758 8sgp:B (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    864759 8sgp:C (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    864760 8sgp:C (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    864761 8sgp:D (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    864762 8sgp:D (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    864763 8sgq:A (3.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    864764 8sgq:B (3.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    864765 8sgq:D (3.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    864766 8sgq:E (3.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    864767 8sgq:G (3.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    864768 8sgq:H (3.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864769 8sgq:Q (3.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    864770 8sgq:Z (3.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    864771 8sgq:a (3.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    864772 8sgq:b (3.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    864773 8sgq:d (3.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    864774 8sgq:e (3.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    864775 8sgq:g (3.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    864776 8sgq:h (3.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864777 8sgq:q (3.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    864778 8sgq:z (3.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    864779 8sgr:A (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    864780 8sgr:A (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    864781 8sgr:B (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    864782 8sgr:B (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    864783 8sgr:C (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    864784 8sgr:C (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    864785 8sgr:D (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    864786 8sgr:D (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    864787 8sgs:A (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    864788 8sgs:A (3.15) BS02 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    864789 8sgs:A (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    864790 8sgs:B (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    864791 8sgs:B (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    864792 8sgs:B (3.15) BS03 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    864793 8sgs:C (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    864794 8sgs:C (3.15) BS02 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    864795 8sgs:C (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    864796 8sgs:D (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    864797 8sgs:D (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    864798 8sgs:D (3.15) BS03 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    864799 8sgt:A (3.6) BS01 CA ? GO:0005432 ... P32418 37794011
    864800 8sgt:A (3.6) BS02 CA ? GO:0005432 ... P32418 37794011
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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