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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    864401 8sf7:VH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864402 8sf7:VI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864403 8sf7:VJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864404 8sf7:VK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864405 8sf7:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    864406 8sf7:VL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864407 8sf7:VM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864408 8sf7:VM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    864409 8sf7:VN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864410 8sf7:WA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864411 8sf7:WB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864412 8sf7:WC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864413 8sf7:WC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    864414 8sf7:WD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864415 8sf7:WE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864416 8sf7:WF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864417 8sf7:WG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864418 8sf7:WH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864419 8sf7:WI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864420 8sf7:WJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864421 8sf7:WK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864422 8sf7:WL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864423 8sf7:WM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    864424 8sf7:WN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    864425 8sf8:A (1.7) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 38330278
    864426 8sf8:A (1.7) BS02 ZWG 2.7.11.11 GO:0001669 ... P00517 38330278
    864427 8sf9:D (1.8) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864428 8sf9:D (1.8) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864429 8sfa:D (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864430 8sfa:D (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864431 8sfa:S (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864432 8sfa:S (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864433 8sfa:b (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864434 8sfa:b (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864435 8sfa:t (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864436 8sfa:t (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864437 8sfb:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864438 8sfb:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864439 8sfc:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864440 8sfc:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864441 8sfd:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864442 8sfd:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864443 8sfe:A (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    864444 8sfe:B (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    864445 8sfe:D (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    864446 8sfe:E (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    864447 8sfe:G (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    864448 8sfe:H (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864449 8sfe:Q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    864450 8sfe:Z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    864451 8sfe:a (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    864452 8sfe:b (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    864453 8sfe:d (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    864454 8sfe:e (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    864455 8sfe:g (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    864456 8sfe:h (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864457 8sfe:q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    864458 8sfe:z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    864459 8sff:A (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    864460 8sff:A (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864461 8sff:B (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    864462 8sff:B (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864463 8sff:D (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    864464 8sff:D (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864465 8sff:E (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    864466 8sff:E (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    864467 8sff:G (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    864468 8sff:G (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864469 8sff:H (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864470 8sff:H (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864471 8sff:Q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    864472 8sff:Q (3.2) BS02 MG ? GO:0002199 ... P50990 37852256
    864473 8sff:Q (3.2) BS03 AF3 ? GO:0002199 ... P50990 37852256
    864474 8sff:Z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    864475 8sff:Z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    864476 8sff:a (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    864477 8sff:a (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864478 8sff:b (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    864479 8sff:b (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864480 8sff:d (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    864481 8sff:d (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864482 8sff:e (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    864483 8sff:e (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    864484 8sff:g (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    864485 8sff:g (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864486 8sff:h (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864487 8sff:h (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864488 8sff:q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    864489 8sff:q (3.2) BS02 AF3 ? GO:0002199 ... P50990 37852256
    864490 8sff:z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    864491 8sff:z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    864492 8sfh:A (3.4) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    864493 8sfh:A (3.4) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    864494 8sfh:A (3.4) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    864495 8sfi:A (3.5) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    864496 8sfi:A (3.5) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    864497 8sfi:A (3.5) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    864498 8sfj:A (3.6) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    864499 8sfj:A (3.6) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    864500 8sfj:A (3.6) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    864501 8sfk:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864502 8sfk:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864503 8sfl:A (3.3) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    864504 8sfl:A (3.3) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    864505 8sfl:A (3.3) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    864506 8sfm:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864507 8sfm:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    864508 8sfn:A (3.3) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    864509 8sfn:A (3.3) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    864510 8sfn:A (3.3) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    864511 8sfo:A (3.3) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    864512 8sfo:A (3.3) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    864513 8sfo:A (3.3) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    864514 8sfo:A (3.3) BS04 MG N/A GO:0003677 ... U2UMQ6 N/A
    864515 8sfo:A (3.3) BS05 MG N/A GO:0003677 ... U2UMQ6 N/A
    864516 8sfp:A (3.8) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    864517 8sfp:A (3.8) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    864518 8sfp:A (3.8) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    864519 8sfq:A (3.5) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    864520 8sfq:A (3.5) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    864521 8sfq:A (3.5) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    864522 8sfr:A (3.5) BS01 rna N/A GO:0003677 ... U2UMQ6 N/A
    864523 8sfr:A (3.5) BS02 dna N/A GO:0003677 ... U2UMQ6 N/A
    864524 8sfr:A (3.5) BS03 dna N/A GO:0003677 ... U2UMQ6 N/A
    864525 8sft:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    864526 8sft:A (2.75) BS02 KMP ? GO:0000166 ... T1KUK4 N/A
    864527 8sft:B (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    864528 8sft:B (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    864529 8sft:C (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    864530 8sft:C (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    864531 8sft:D (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    864532 8sfu:A (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    864533 8sfu:A (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    864534 8sfu:B (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    864535 8sfu:B (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    864536 8sfw:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    864537 8sfw:A (2.75) BS02 QUE ? GO:0000166 ... T1KUK4 N/A
    864538 8sfy:A (2.35) BS01 UPG ? GO:0000166 ... T1KUK4 N/A
    864539 8sg0:A (1.25) BS01 NAD N/A GO:0047918 ... N/A 38224521
    864540 8sg0:A (1.25) BS02 GDD N/A GO:0047918 ... N/A 38224521
    864541 8sg0:A (1.25) BS03 GDC N/A GO:0047918 ... N/A 38224521
    864542 8sg0:B (1.25) BS01 NAD N/A GO:0047918 ... N/A 38224521
    864543 8sg0:B (1.25) BS02 GDD N/A GO:0047918 ... N/A 38224521
    864544 8sg0:B (1.25) BS03 GDC N/A GO:0047918 ... N/A 38224521
    864545 8sg1:R (2.94) BS01 peptide ? GO:0004930 ... Q99788 38055679
    864546 8sg1:R (2.94) BS02 CLR ? GO:0004930 ... Q99788 38055679
    864547 8sg2:A (-1.00) BS01 peptide 5.2.1.8 GO:0000413 ... Q13526 38687676
    864548 8sg5:A (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    864549 8sg5:A (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864550 8sg5:A (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864551 8sg5:A (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864552 8sg5:B (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    864553 8sg5:B (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864554 8sg5:B (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864555 8sg5:B (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864556 8sg5:C (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    864557 8sg5:C (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864558 8sg5:C (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864559 8sg5:C (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864560 8sg5:D (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    864561 8sg5:D (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864562 8sg5:D (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864563 8sg5:D (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864564 8sg5:E (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    864565 8sg5:E (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864566 8sg5:E (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864567 8sg5:E (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864568 8sg5:F (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    864569 8sg5:F (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864570 8sg5:F (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864571 8sg5:F (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864572 8sg5:G (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    864573 8sg5:G (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864574 8sg5:G (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864575 8sg5:G (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864576 8sg5:H (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    864577 8sg5:H (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864578 8sg5:H (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864579 8sg5:H (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    864580 8sg7:B (2.4) BS01 peptide ? GO:0005737 ... P52293 38441555
    864581 8sg8:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    864582 8sg8:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864583 8sg8:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    864584 8sg8:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    864585 8sg8:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    864586 8sg8:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    864587 8sg8:E (3.0) BS01 peptide ? GO:0003730 ... P48643 37852256
    864588 8sg8:E (3.0) BS02 ADP ? GO:0003730 ... P48643 37852256
    864589 8sg8:E (3.0) BS03 AF3 ? GO:0003730 ... P48643 37852256
    864590 8sg8:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    864591 8sg8:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    864592 8sg8:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    864593 8sg8:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    864594 8sg8:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    864595 8sg8:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    864596 8sg8:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    864597 8sg8:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    864598 8sg8:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    864599 8sg8:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    864600 8sg8:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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