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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7801 1dj5:A (1.93) BS02 HGU 1.11.1.5 GO:0004601 ... P00431 10722697
    7802 1dj7:A (1.6) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 10649999
    7803 1dj9:A (2.0) BS01 KAM 2.3.1.47 GO:0003824 ... P12998 10642176
    7804 1dje:A (1.71) BS01 PLP 2.3.1.47 GO:0003824 ... P12998 10642176
    7805 1djg:A (2.6) BS01 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7806 1djg:A (2.6) BS02 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7807 1djg:A (2.6) BS03 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7808 1djg:A (2.6) BS04 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7809 1djg:B (2.6) BS01 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7810 1djg:B (2.6) BS02 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7811 1djg:B (2.6) BS03 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7812 1djg:B (2.6) BS04 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7813 1djh:A (2.5) BS01 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7814 1djh:A (2.5) BS02 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7815 1djh:A (2.5) BS03 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7816 1djh:B (2.5) BS01 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7817 1djh:B (2.5) BS02 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7818 1djh:B (2.5) BS03 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7819 1dji:A (2.5) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7820 1dji:A (2.5) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7821 1dji:A (2.5) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7822 1dji:B (2.5) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7823 1dji:B (2.5) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7824 1dji:B (2.5) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7825 1djl:A (2.0) BS01 NAP 7.1.1.1 N/A Q13423 10673423
    7826 1djl:B (2.0) BS01 NAP 7.1.1.1 N/A Q13423 10673423
    7827 1djn:A (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    7828 1djn:A (2.2) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 10869173
    7829 1djn:A (2.2) BS03 ADP 1.5.8.2 GO:0009056 ... P16099 10869173
    7830 1djn:B (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    7831 1djn:B (2.2) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 10869173
    7832 1djn:B (2.2) BS03 ADP 1.5.8.2 GO:0009056 ... P16099 10869173
    7833 1djo:A (2.0) BS01 CAB 3.5.1.38 GO:0004067 ... P10182 10684596
    7834 1djo:B (2.0) BS01 CAB 3.5.1.38 GO:0004067 ... P10182 10684596
    7835 1djp:A (1.9) BS01 DO2 3.5.1.38 GO:0004067 ... P10182 10684596
    7836 1djp:B (1.9) BS01 DO2 3.5.1.38 GO:0004067 ... P10182 10684596
    7837 1djq:A (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    7838 1djq:A (2.2) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 10869173
    7839 1djq:A (2.2) BS03 ADP 1.5.8.2 GO:0009056 ... P16099 10869173
    7840 1djq:B (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    7841 1djq:B (2.2) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 10869173
    7842 1djq:B (2.2) BS03 ADP 1.5.8.2 GO:0009056 ... P16099 10869173
    7843 1djr:D (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7844 1djr:E (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7845 1djr:F (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7846 1djr:G (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7847 1djr:H (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7848 1djs:A (2.4) BS01 SO4 2.7.10.1 N/A P21802 10618369
    7849 1djs:A (2.4) BS02 SO4 2.7.10.1 N/A P21802 10618369
    7850 1djs:B (2.4) BS01 SO4 ? GO:0008083 ... P05230 10618369
    7851 1djs:B (2.4) BS02 SO4 ? GO:0008083 ... P05230 10618369
    7852 1djs:B (2.4) BS03 SO4 ? GO:0008083 ... P05230 10618369
    7853 1djs:B (2.4) BS04 SO4 ? GO:0008083 ... P05230 10618369
    7854 1dju:A (2.1) BS01 PLP 2.6.1.- GO:0003824 ... O59096 10671523
    7855 1dju:B (2.1) BS01 PLP 2.6.1.- GO:0003824 ... O59096 10671523
    7856 1djw:A (2.45) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7857 1djw:A (2.45) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7858 1djw:A (2.45) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7859 1djw:A (2.45) BS04 CIP 3.1.4.11 GO:0004435 ... P10688 9048554
    7860 1djw:B (2.45) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7861 1djw:B (2.45) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7862 1djw:B (2.45) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7863 1djw:B (2.45) BS04 CIP 3.1.4.11 GO:0004435 ... P10688 9048554
    7864 1djx:A (2.3) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7865 1djx:A (2.3) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7866 1djx:A (2.3) BS03 I3P 3.1.4.11 GO:0004435 ... P10688 9048554 MOAD: Kd=1.7uM
    7867 1djx:B (2.3) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7868 1djx:B (2.3) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7869 1djx:B (2.3) BS03 I3P 3.1.4.11 GO:0004435 ... P10688 9048554 MOAD: Kd=1.7uM
    7870 1djy:A (2.8) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7871 1djy:A (2.8) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7872 1djy:A (2.8) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7873 1djy:A (2.8) BS04 I2P 3.1.4.11 GO:0004435 ... P10688 9048554
    7874 1djy:B (2.8) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7875 1djy:B (2.8) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7876 1djy:B (2.8) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7877 1djy:B (2.8) BS04 I2P 3.1.4.11 GO:0004435 ... P10688 9048554
    7878 1djz:A (2.95) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7879 1djz:A (2.95) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7880 1djz:A (2.95) BS03 IP2 3.1.4.11 GO:0004435 ... P10688 9048554
    7881 1djz:B (2.95) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7882 1djz:B (2.95) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7883 1djz:B (2.95) BS03 IP2 3.1.4.11 GO:0004435 ... P10688 9048554
    7884 1dk0:A (1.77) BS01 HEM ? GO:0005515 ... Q54450 10966573
    7885 1dk0:B (1.77) BS01 HEM ? GO:0005515 ... Q54450 10966573
    7886 1dk1:A (2.8) BS01 rna ? GO:0003735 ... P80378 10742169
    7887 1dk4:A (2.6) BS01 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    7888 1dk4:A (2.6) BS02 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    7889 1dk4:B (2.6) BS01 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    7890 1dk4:B (2.6) BS02 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    7891 1dka:A (2.6) BS01 K 4.1.1.64 GO:0008453 ... P16932 8342040
    7892 1dka:A (2.6) BS02 PLP 4.1.1.64 GO:0008453 ... P16932 8342040
    7893 1dkd:A (2.1) BS01 peptide 5.6.1.7 GO:0042026 ... P0A6F5 10619429
    7894 1dkd:B (2.1) BS01 peptide 5.6.1.7 GO:0042026 ... P0A6F5 10619429
    7895 1dkd:C (2.1) BS01 peptide 5.6.1.7 GO:0042026 ... P0A6F5 10619429
    7896 1dkd:D (2.1) BS01 peptide 5.6.1.7 GO:0042026 ... P0A6F5 10619429
    7897 1dke:A (2.1) BS01 HEM ? GO:0004601 ... P69905 10794410
    7898 1dke:B (2.1) BS01 HEM ? GO:0004601 ... P68871 10794410
    7899 1dke:C (2.1) BS01 HEM ? GO:0004601 ... P69905 10794410
    7900 1dke:D (2.1) BS01 HEM ? GO:0004601 ... P68871 10794410
    7901 1dkf:B (2.5) BS01 BMS ? GO:0003677 ... P10276 10882070
    7902 1dkh:A (3.2) BS01 HEM ? GO:0005515 ... Q54450 10966573
    7903 1dko:A (2.38) BS01 WO4 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 10655611
    7904 1dkp:A (2.28) BS01 IHP 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 10655611
    7905 1dkq:A (2.05) BS01 IHP 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 10655611
    7906 1dks:A (3.2) BS01 PO4 ? GO:0000307 ... P61024 7791211
    7907 1dks:B (3.2) BS01 PO4 ? GO:0000307 ... P61024 7791211
    7908 1dkt:A (2.9) BS01 V7O ? GO:0000307 ... P61024 7791211
    7909 1dkt:B (2.9) BS01 V7O ? GO:0000307 ... P61024 7791211
    7910 1dku:A (2.2) BS01 AP2 2.7.6.1 GO:0000287 ... P14193 10742175
    7911 1dku:A (2.2) BS02 ABM 2.7.6.1 GO:0000287 ... P14193 10742175
    7912 1dku:A (2.2) BS03 AP2 2.7.6.1 GO:0000287 ... P14193 10742175
    7913 1dku:B (2.2) BS01 AP2 2.7.6.1 GO:0000287 ... P14193 10742175
    7914 1dku:B (2.2) BS02 AP2 2.7.6.1 GO:0000287 ... P14193 10742175
    7915 1dku:B (2.2) BS03 ABM 2.7.6.1 GO:0000287 ... P14193 10742175
    7916 1dkx:A (2.0) BS01 peptide ? GO:0005524 ... P0A6Y8 8658133
    7917 1dky:A (2.8) BS01 peptide ? GO:0005524 ... P0A6Y8 8658133
    7918 1dky:B (2.8) BS01 peptide ? GO:0005524 ... P0A6Y8 8658133
    7919 1dkz:A (2.0) BS01 peptide ? GO:0005524 ... P0A6Y8 8658133
    7920 1dl5:A (1.8) BS01 SAH 2.1.1.77 GO:0004719 ... Q56308 11080641
    7921 1dl5:B (1.8) BS01 SAH 2.1.1.77 GO:0004719 ... Q56308 11080641
    7922 1dl6:A (-1.00) BS01 ZN 2.3.1.48 GO:0006352 ... Q00403 11045620
    7923 1dl7:H (2.35) BS01 NCH ? GO:0002250 ... P01820 10859335 PDBbind: -logKd/Ki=6.49, Kd=0.32uM
    7924 1dl7:L (2.35) BS01 NCH ? GO:0002250 ... P01724 10859335 MOAD: Kd=0.32uM
    PDBbind: -logKd/Ki=6.49, Kd=0.32uM
    7925 1dlh:A (2.8) BS01 peptide ? GO:0006955 ... P01903 8145819
    7926 1dlh:B (2.8) BS01 peptide ? GO:0006955 ... P01911 8145819
    7927 1dlh:D (2.8) BS01 peptide ? GO:0006955 ... P01903 8145819
    7928 1dlh:E (2.8) BS01 peptide ? GO:0006955 ... P01911 8145819
    7929 1dli:A (2.31) BS01 NAD 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    7930 1dli:A (2.31) BS02 UDX 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    7931 1dlj:A (1.8) BS01 NAI 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    7932 1dlj:A (1.8) BS02 UGA 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    7933 1dlk:B (2.14) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7934 1dlk:B (2.14) BS02 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7935 1dlk:B (2.14) BS03 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7936 1dlk:D (2.14) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7937 1dlk:D (2.14) BS02 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7938 1dll:A (1.8) BS01 BGC 3.4.24.68 GO:0005576 ... P04958 10722735
    7939 1dll:A (1.8) BS02 GAL 3.4.24.68 GO:0005576 ... P04958 10722735
    7940 1dlm:A (2.0) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7941 1dlm:B (2.0) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7942 1dlq:A (2.3) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7943 1dlq:B (2.3) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7944 1dlr:A (2.3) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 7890613
    7945 1dlr:A (2.3) BS02 MXA 1.5.1.3 GO:0000900 ... P00374 7890613 MOAD: Ki=16.4nM
    BindingDB: IC50=0.61nM, Ki=0.025nM
    7946 1dls:A (2.3) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 7890613
    7947 1dls:A (2.3) BS02 MTX 1.5.1.3 GO:0000900 ... P00374 7890613 MOAD: Ki=10.9nM
    BindingDB: IC50=22nM, Kd=0.194984nM, Ki=4420nM, EC50=13.3nM
    7948 1dlt:A (1.9) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7949 1dlt:A (1.9) BS02 CAQ 1.13.11.1 GO:0003824 ... P07773 10801478
    7950 1dlt:B (1.9) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7951 1dlt:B (1.9) BS02 CAQ 1.13.11.1 GO:0003824 ... P07773 10801478
    7952 1dlv:A (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    7953 1dlv:B (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    7954 1dlv:C (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    7955 1dlv:D (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    7956 1dlw:A (1.54) BS01 HEM ? GO:0005344 ... P15160 10835341
    7957 1dly:A (1.8) BS01 HEM ? GO:0005344 ... Q08753 10835341
    7958 1dm1:A (1.99) BS01 HEM ? GO:0005344 ... P02210 10694477
    7959 1dm2:A (2.1) BS01 HMD 2.7.11.22 GO:0000082 ... P24941 10662688 PDBbind: -logKd/Ki=7.15, IC50=70nM
    7960 1dm3:A (2.0) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 10764581
    7961 1dm3:B (2.0) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 10764581
    7962 1dm3:C (2.0) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 10764581
    7963 1dm3:D (2.0) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 10764581
    7964 1dm4:B (2.5) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10739913
    7965 1dm5:A (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7966 1dm5:A (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7967 1dm5:B (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7968 1dm5:B (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7969 1dm5:C (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7970 1dm5:C (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7971 1dm5:D (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7972 1dm5:D (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7973 1dm5:E (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7974 1dm5:E (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7975 1dm5:F (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7976 1dm6:A (1.95) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    7977 1dm6:A (1.95) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    7978 1dm6:A (1.95) BS03 PH3 1.14.13.39 GO:0004517 ... P29473 11695891
    7979 1dm6:A (1.95) BS04 PH3 1.14.13.39 GO:0004517 ... P29473 11695891
    7980 1dm6:A (1.95) BS05 PH3 1.14.13.39 GO:0004517 ... P29473 11695891
    7981 1dm6:B (1.95) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    7982 1dm6:B (1.95) BS02 PH3 1.14.13.39 GO:0004517 ... P29473 11695891
    7983 1dm6:B (1.95) BS03 PH3 1.14.13.39 GO:0004517 ... P29473 11695891
    7984 1dm6:B (1.95) BS04 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    7985 1dm6:B (1.95) BS05 PH3 1.14.13.39 GO:0004517 ... P29473 11695891
    7986 1dm7:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    7987 1dm7:A (2.1) BS02 HRG 1.14.13.39 GO:0004517 ... P29473 N/A
    7988 1dm7:A (2.1) BS03 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    7989 1dm7:B (2.1) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    7990 1dm7:B (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    7991 1dm7:B (2.1) BS03 HRG 1.14.13.39 GO:0004517 ... P29473 N/A
    7992 1dm8:A (2.25) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    7993 1dm8:A (2.25) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    7994 1dm8:A (2.25) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 N/A
    7995 1dm8:A (2.25) BS04 TZC 1.14.13.39 GO:0004517 ... P29473 N/A
    7996 1dm8:A (2.25) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 N/A
    7997 1dm8:B (2.25) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    7998 1dm8:B (2.25) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 N/A
    7999 1dm8:B (2.25) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    8000 1dm8:B (2.25) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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