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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    60201 1wrk:B (2.15) BS01 TFP ? GO:0005509 ... P63316 N/A
    60202 1wrk:B (2.15) BS02 CA ? GO:0005509 ... P63316 N/A
    60203 1wrk:B (2.15) BS03 TFP ? GO:0005509 ... P63316 N/A
    60204 1wrk:B (2.15) BS04 TFP ? GO:0005509 ... P63316 N/A
    60205 1wrl:A (2.6) BS01 CA ? GO:0005509 ... P63316 N/A
    60206 1wrl:A (2.6) BS02 TFP ? GO:0005509 ... P63316 N/A
    60207 1wrl:A (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    60208 1wrl:A (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    60209 1wrl:B (2.6) BS01 TFP ? GO:0005509 ... P63316 N/A
    60210 1wrl:B (2.6) BS02 CA ? GO:0005509 ... P63316 N/A
    60211 1wrl:B (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    60212 1wrl:B (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    60213 1wrl:C (2.6) BS01 CA ? GO:0005509 ... P63316 N/A
    60214 1wrl:C (2.6) BS02 TFP ? GO:0005509 ... P63316 N/A
    60215 1wrl:C (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    60216 1wrl:C (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    60217 1wrl:D (2.6) BS01 TFP ? GO:0005509 ... P63316 N/A
    60218 1wrl:D (2.6) BS02 CA ? GO:0005509 ... P63316 N/A
    60219 1wrl:D (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    60220 1wrl:D (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    60221 1wrl:E (2.6) BS01 CA ? GO:0005509 ... P63316 N/A
    60222 1wrl:E (2.6) BS02 TFP ? GO:0005509 ... P63316 N/A
    60223 1wrl:E (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    60224 1wrl:E (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    60225 1wrl:F (2.6) BS01 TFP ? GO:0005509 ... P63316 N/A
    60226 1wrl:F (2.6) BS02 CA ? GO:0005509 ... P63316 N/A
    60227 1wrl:F (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    60228 1wrl:F (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    60229 1wrn:A (2.3) BS01 MN ? GO:0003723 ... P10943 16192572
    60230 1wrn:A (2.3) BS02 HIS ? GO:0003723 ... P10943 16192572
    60231 1wrn:A (2.3) BS03 HIS ? GO:0003723 ... P10943 16192572
    60232 1wrn:B (2.3) BS01 MN ? GO:0003723 ... P10943 16192572
    60233 1wrn:B (2.3) BS02 HIS ? GO:0003723 ... P10943 16192572
    60234 1wrn:B (2.3) BS03 HIS ? GO:0003723 ... P10943 16192572
    60235 1wrn:C (2.3) BS01 HIS ? GO:0003723 ... P10943 16192572
    60236 1wrn:C (2.3) BS02 MN ? GO:0003723 ... P10943 16192572
    60237 1wrn:C (2.3) BS03 HIS ? GO:0003723 ... P10943 16192572
    60238 1wro:A (2.35) BS01 HIS ? GO:0003723 ... P10943 16192572
    60239 1wro:A (2.35) BS02 HIS ? GO:0003723 ... P10943 16192572
    60240 1wro:B (2.35) BS01 HIS ? GO:0003723 ... P10943 16192572
    60241 1wro:B (2.35) BS02 HIS ? GO:0003723 ... P10943 16192572
    60242 1wro:C (2.35) BS01 HIS ? GO:0003723 ... P10943 16192572
    60243 1wro:C (2.35) BS02 HIS ? GO:0003723 ... P10943 16192572
    60244 1wrp:R (2.2) BS01 TRP ? GO:0003677 ... P0A881 3375234
    60245 1wrq:A (2.2) BS01 rna ? GO:0003723 ... P10943 N/A
    60246 1wrq:A (2.2) BS02 HIS ? GO:0003723 ... P10943 N/A
    60247 1wrq:B (2.2) BS01 rna ? GO:0003723 ... P10943 N/A
    60248 1wrq:B (2.2) BS02 HIS ? GO:0003723 ... P10943 N/A
    60249 1wrr:A (1.64) BS01 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    60250 1wrs:R (-1.00) BS01 TRP ? GO:0003677 ... P0A881 8433368
    60251 1wrs:R (-1.00) BS02 TRP ? GO:0003677 ... P0A881 8433368
    60252 1wrs:S (-1.00) BS01 TRP ? GO:0003677 ... P0A881 8433368
    60253 1wrs:S (-1.00) BS02 TRP ? GO:0003677 ... P0A881 8433368
    60254 1wrv:A (1.5) BS01 PLP 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    60255 1wrv:B (1.5) BS01 PLP 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    60256 1wrv:C (1.5) BS01 PLP 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    60257 1wrz:A (2.0) BS01 peptide ? GO:0000086 ... P0DP23 N/A
    60258 1wrz:A (2.0) BS02 CA ? GO:0000086 ... P0DP23 N/A
    60259 1wrz:A (2.0) BS03 CA ? GO:0000086 ... P0DP23 N/A
    60260 1wrz:A (2.0) BS04 CA ? GO:0000086 ... P0DP23 N/A
    60261 1wrz:A (2.0) BS05 CA ? GO:0000086 ... P0DP23 N/A
    60262 1ws1:A (2.0) BS01 BB2 3.5.1.88 GO:0006412 ... Q819U0 16049914 MOAD: Ki=0.28nM
    PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    60263 1ws2:A (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    60264 1ws2:A (2.7) BS02 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    60265 1ws2:B (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    60266 1ws2:C (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    60267 1ws2:C (2.7) BS02 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    60268 1ws2:D (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    60269 1ws3:A (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    60270 1ws3:A (3.2) BS02 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    60271 1ws3:B (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    60272 1ws3:C (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    60273 1ws3:D (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    60274 1ws4:A (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    60275 1ws4:A (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    60276 1ws4:A (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    60277 1ws4:A (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    PDBbind: -logKd/Ki=3.00, Kd=1.00mM
    60278 1ws4:C (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    60279 1ws4:C (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    60280 1ws4:C (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    60281 1ws4:C (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    60282 1ws4:E (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    60283 1ws4:E (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    60284 1ws4:E (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    60285 1ws4:E (1.9) BS04 AMG ? GO:0005575 ... P18670 15733927
    60286 1ws4:G (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    60287 1ws4:G (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    60288 1ws4:G (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    60289 1ws4:G (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    60290 1ws5:A (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    60291 1ws5:A (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    60292 1ws5:A (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    60293 1ws5:A (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    60294 1ws5:C (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    60295 1ws5:C (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    60296 1ws5:C (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    60297 1ws5:C (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    60298 1ws5:E (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    60299 1ws5:E (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    60300 1ws5:E (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    60301 1ws5:E (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    60302 1ws5:G (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    60303 1ws5:G (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    60304 1ws5:G (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    60305 1ws5:G (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    60306 1ws7:A (1.9) BS01 CU1 ? GO:0009055 ... P80728 15858169
    60307 1ws7:B (1.9) BS01 CU1 ? GO:0009055 ... P80728 15858169
    60308 1ws7:C (1.9) BS01 CU1 ? GO:0009055 ... P80728 15858169
    60309 1ws7:D (1.9) BS01 CU1 ? GO:0009055 ... P80728 15858169
    60310 1ws8:A (1.6) BS01 CU ? GO:0009055 ... P80728 15858169
    60311 1ws8:B (1.6) BS01 CU ? GO:0009055 ... P80728 15858169
    60312 1ws8:C (1.6) BS01 CU ? GO:0009055 ... P80728 15858169
    60313 1ws8:D (1.6) BS01 CU ? GO:0009055 ... P80728 15858169
    60314 1wsb:A (1.8) BS01 FMN ? GO:0009055 ... P00323 19118653
    60315 1wsd:A (1.5) BS01 CA 3.4.21.- GO:0004252 ... Q99405 9278275
    60316 1wse:A (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    60317 1wse:B (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    60318 1wsf:A (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    60319 1wsf:B (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    60320 1wsf:D (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    60321 1wsg:A (2.2) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    60322 1wsg:D (2.2) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    60323 1wss:H (2.6) BS01 CA 3.4.21.21 GO:0004252 ... P08709 16510984
    60324 1wss:H (2.6) BS02 3CB 3.4.21.21 GO:0004252 ... P08709 16510984 PDBbind: -logKd/Ki=7.77, IC50=17nM
    60325 1wss:L (2.6) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 16510984
    60326 1wss:L (2.6) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 16510984
    60327 1wss:L (2.6) BS03 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    60328 1wss:L (2.6) BS04 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    60329 1wss:L (2.6) BS05 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    60330 1wss:L (2.6) BS06 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    60331 1wss:L (2.6) BS07 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    60332 1wss:L (2.6) BS08 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    60333 1wss:L (2.6) BS09 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    60334 1wst:A (1.95) BS01 PLP 2.6.1.- GO:0008483 ... Q9V2W5 N/A
    60335 1wsu:A (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870 PDBbind: Kd=0.2nM
    60336 1wsu:B (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870 PDBbind: Kd=0.2nM
    60337 1wsu:C (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870 PDBbind: Kd=0.2nM
    60338 1wsv:A (2.6) BS01 THH 2.1.2.10 GO:0004047 ... P48728 16051266
    60339 1wsv:B (2.6) BS01 THH 2.1.2.10 GO:0004047 ... P48728 16051266
    60340 1wsw:A (1.69) BS01 FMN ? GO:0009055 ... P00323 19118653
    60341 1wt1:A (1.55) BS01 FUC 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 15475562
    60342 1wt1:A (1.55) BS02 UDP 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 15475562
    60343 1wt2:A (1.9) BS01 DLG 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 15475562
    60344 1wt2:A (1.9) BS02 UDP 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 15475562
    60345 1wt3:A (1.8) BS01 UDP 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 15475562
    60346 1wt9:A (2.01) BS01 CA ? GO:0005576 ... Q9IAM1 N/A
    60347 1wt9:B (2.01) BS01 CA ? GO:0005576 ... Q9DEF8 N/A
    60348 1wta:A (1.78) BS01 ADE 2.4.2.28 GO:0003824 ... Q9YAQ8 N/A
    60349 1wtb:A (-1.00) BS01 dna ? GO:0003676 ... Q14103 15734733
    60350 1wtc:A (1.9) BS01 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... O59791 19640845
    60351 1wtc:A (1.9) BS02 PLP 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... O59791 19640845
    60352 1wtc:A (1.9) BS03 ACP 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... O59791 19640845
    60353 1wte:A (1.9) BS01 dna 3.1.21.4 N/A Q9RPJ3 15590682
    60354 1wte:A (1.9) BS02 dna 3.1.21.4 N/A Q9RPJ3 15590682
    60355 1wte:B (1.9) BS01 dna 3.1.21.4 N/A Q9RPJ3 15590682
    60356 1wte:B (1.9) BS02 dna 3.1.21.4 N/A Q9RPJ3 15590682
    60357 1wtf:A (1.6) BS01 COA ? GO:0005506 ... P10245 16156653
    60358 1wtf:A (1.6) BS02 F3S ? GO:0005506 ... P10245 16156653
    60359 1wtf:B (1.6) BS01 F3S ? GO:0005506 ... P10245 16156653
    60360 1wtf:C (1.6) BS01 F3S ? GO:0005506 ... P10245 16156653
    60361 1wtf:D (1.6) BS01 F3S ? GO:0005506 ... P10245 16156653
    60362 1wtg:H (2.2) BS01 CA 3.4.21.21 GO:0004252 ... P08709 15607748
    60363 1wtg:H (2.2) BS02 3BP 3.4.21.21 GO:0004252 ... P08709 15607748 MOAD: ic50=93nM
    PDBbind: -logKd/Ki=7.03, IC50=93nM
    BindingDB: IC50=93nM
    60364 1wtg:L (2.2) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 15607748
    60365 1wtg:L (2.2) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 15607748
    60366 1wtg:L (2.2) BS03 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    60367 1wtg:L (2.2) BS04 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    60368 1wtg:L (2.2) BS05 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    60369 1wtg:L (2.2) BS06 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    60370 1wtg:L (2.2) BS07 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    60371 1wtg:L (2.2) BS08 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    60372 1wtg:L (2.2) BS09 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    60373 1wto:A (1.5) BS01 dna ? GO:0003677 ... P13123 15653643
    60374 1wto:A (1.5) BS02 dna ? GO:0003677 ... P13123 15653643
    60375 1wtp:A (1.9) BS01 dna ? GO:0003677 ... P13123 15653643
    60376 1wtp:A (1.9) BS02 dna ? GO:0003677 ... P13123 15653643
    60377 1wtp:A (1.9) BS03 dna ? GO:0003677 ... P13123 15653643
    60378 1wtp:B (1.9) BS01 dna ? GO:0003677 ... P13123 15653643
    60379 1wtp:B (1.9) BS02 dna ? GO:0003677 ... P13123 15653643
    60380 1wtq:A (1.7) BS01 dna ? GO:0003677 ... P13123 15653643
    60381 1wtq:A (1.7) BS02 dna ? GO:0003677 ... P13123 15653643
    60382 1wtr:A (1.8) BS01 dna ? GO:0003677 ... P13123 15653643
    60383 1wtr:A (1.8) BS02 dna ? GO:0003677 ... P13123 15653643
    60384 1wtv:A (1.6) BS01 dna ? GO:0003677 ... P13123 15653643
    60385 1wtv:A (1.6) BS02 dna ? GO:0003677 ... P13123 15653643
    60386 1wtw:A (2.2) BS01 dna ? GO:0003677 ... P13123 15653643
    60387 1wtw:A (2.2) BS02 dna ? GO:0003677 ... P13123 15653643
    60388 1wtx:A (2.2) BS01 dna ? GO:0003677 ... P13123 15653643
    60389 1wtx:A (2.2) BS02 dna ? GO:0003677 ... P13123 15653643
    60390 1wu1:A (2.3) BS01 CA 3.4.21.6 GO:0004252 ... P00742 15911309
    60391 1wu1:A (2.3) BS02 CA 3.4.21.6 GO:0004252 ... P00742 15911309
    60392 1wu1:A (2.3) BS03 D91 3.4.21.6 GO:0004252 ... P00742 15911309 MOAD: ic50=18nM
    PDBbind: -logKd/Ki=7.74, IC50=18nM
    60393 1wu5:A (2.2) BS01 XYP 3.2.1.156 GO:0003824 ... Q9KB30 15718242
    60394 1wu6:A (1.45) BS01 XYP 3.2.1.156 GO:0003824 ... Q9KB30 15718242
    60395 1wu8:A (2.6) BS01 ADN 3.13.2.3 GO:0016787 ... O58212 N/A
    60396 1wu8:A (2.6) BS02 ADN 3.13.2.3 GO:0016787 ... O58212 N/A
    60397 1wu8:B (2.6) BS01 ADN 3.13.2.3 GO:0016787 ... O58212 N/A
    60398 1wu8:B (2.6) BS02 ADN 3.13.2.3 GO:0016787 ... O58212 N/A
    60399 1wu8:C (2.6) BS01 ADN 3.13.2.3 GO:0016787 ... O58212 N/A
    60400 1wu8:C (2.6) BS02 ADN 3.13.2.3 GO:0016787 ... O58212 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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