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BioLiP
Download all results in tab-seperated text for 434 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 8jw0:f (2.9) BS07 CLA N/A GO:0009522 ... N/A 38319970
    402 8jw0:f (2.9) BS08 CLA N/A GO:0009522 ... N/A 38319970
    403 8jw0:h (2.9) BS01 CLA N/A N/A N/A 38319970
    404 8jw0:h (2.9) BS02 CLA N/A N/A N/A 38319970
    405 8jw0:h (2.9) BS03 DD6 N/A N/A N/A 38319970
    406 8jw0:h (2.9) BS04 PID N/A N/A N/A 38319970
    407 8jw0:h (2.9) BS05 CLA N/A N/A N/A 38319970
    408 8jw0:i (2.9) BS01 CLA N/A N/A N/A 38319970
    409 8jw0:i (2.9) BS02 CLA N/A N/A N/A 38319970
    410 8jw0:i (2.9) BS03 CLA N/A N/A N/A 38319970
    411 8jw0:j (2.9) BS01 CLA N/A GO:0009522 ... N/A 38319970
    412 8jw0:j (2.9) BS02 CLA N/A GO:0009522 ... N/A 38319970
    413 8jw0:j (2.9) BS03 CLA N/A GO:0009522 ... N/A 38319970
    414 8jw0:j (2.9) BS04 PID N/A GO:0009522 ... N/A 38319970
    415 8jw0:j (2.9) BS05 CLA N/A GO:0009522 ... N/A 38319970
    416 8jw0:l (2.9) BS01 CLA N/A GO:0009522 ... N/A 38319970
    417 8jw0:l (2.9) BS02 CLA N/A GO:0009522 ... N/A 38319970
    418 8jw0:l (2.9) BS03 CLA N/A GO:0009522 ... N/A 38319970
    419 8jw0:l (2.9) BS04 CLA N/A GO:0009522 ... N/A 38319970
    420 8jw0:l (2.9) BS05 CLA N/A GO:0009522 ... N/A 38319970
    421 8jw0:l (2.9) BS06 CLA N/A GO:0009522 ... N/A 38319970
    422 8jw0:l (2.9) BS07 CLA N/A GO:0009522 ... N/A 38319970
    423 8jw0:l (2.9) BS08 CLA N/A GO:0009522 ... N/A 38319970
    424 8jw0:l (2.9) BS09 CLA N/A GO:0009522 ... N/A 38319970
    425 8jw0:l (2.9) BS10 CLA N/A GO:0009522 ... N/A 38319970
    426 8jw0:l (2.9) BS11 CLA N/A GO:0009522 ... N/A 38319970
    427 8jw0:l (2.9) BS12 CLA N/A GO:0009522 ... N/A 38319970
    428 8jw0:l (2.9) BS13 CLA N/A GO:0009522 ... N/A 38319970
    429 8jw0:l (2.9) BS14 UIX N/A GO:0009522 ... N/A 38319970
    430 8jw0:m (2.9) BS01 CLA N/A N/A N/A 38319970
    431 8jw0:m (2.9) BS02 CLA N/A N/A N/A 38319970
    432 8jw0:m (2.9) BS03 CLA N/A N/A N/A 38319970
    433 8jw0:m (2.9) BS04 DD6 N/A N/A N/A 38319970
    434 8jw0:m (2.9) BS05 CLA N/A N/A N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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