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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 366 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 7f4v:bB (2.04) BS28 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    202 7f4v:bB (2.04) BS29 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    203 7f4v:bB (2.04) BS30 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    204 7f4v:bB (2.04) BS31 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    205 7f4v:bB (2.04) BS32 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    206 7f4v:bB (2.04) BS33 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    207 7f4v:bB (2.04) BS34 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    208 7f4v:bB (2.04) BS35 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    209 7f4v:bB (2.04) BS36 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    210 7f4v:bB (2.04) BS37 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    211 7f4v:bB (2.04) BS38 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    212 7f4v:bB (2.04) BS39 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    213 7f4v:bB (2.04) BS40 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    214 7f4v:bB (2.04) BS41 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    215 7f4v:bB (2.04) BS42 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    216 7f4v:bB (2.04) BS43 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    217 7f4v:bB (2.04) BS44 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    218 7f4v:bB (2.04) BS45 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    219 7f4v:bB (2.04) BS46 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    220 7f4v:bB (2.04) BS47 1L3 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    221 7f4v:bB (2.04) BS48 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    222 7f4v:bB (2.04) BS49 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    223 7f4v:bB (2.04) BS50 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    224 7f4v:bC (2.04) BS01 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    225 7f4v:bC (2.04) BS02 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    226 7f4v:bF (2.04) BS01 CLA ? GO:0009522 ... Q7NH05 N/A
    227 7f4v:bF (2.04) BS02 CLA ? GO:0009522 ... Q7NH05 N/A
    228 7f4v:bF (2.04) BS03 CLA ? GO:0009522 ... Q7NH05 N/A
    229 7f4v:bF (2.04) BS04 CLA ? GO:0009522 ... Q7NH05 N/A
    230 7f4v:bF (2.04) BS05 CLA ? GO:0009522 ... Q7NH05 N/A
    231 7f4v:bF (2.04) BS06 CLA ? GO:0009522 ... Q7NH05 N/A
    232 7f4v:bI (2.04) BS01 CLA ? GO:0005886 ... P0C029 N/A
    233 7f4v:bJ (2.04) BS01 CLA N/A N/A N/A N/A
    234 7f4v:bJ (2.04) BS02 CLA N/A N/A N/A N/A
    235 7f4v:bJ (2.04) BS03 CLA N/A N/A N/A N/A
    236 7f4v:bL (2.04) BS01 CLA ? GO:0005886 ... Q7NIE7 N/A
    237 7f4v:bL (2.04) BS02 CLA ? GO:0005886 ... Q7NIE7 N/A
    238 7f4v:bL (2.04) BS03 CLA ? GO:0005886 ... Q7NIE7 N/A
    239 7f4v:bL (2.04) BS04 CLA ? GO:0005886 ... Q7NIE7 N/A
    240 7f4v:bL (2.04) BS05 CLA ? GO:0005886 ... Q7NIE7 N/A
    241 7f4v:bL (2.04) BS06 CLA ? GO:0005886 ... Q7NIE7 N/A
    242 7f4v:bL (2.04) BS07 CLA ? GO:0005886 ... Q7NIE7 N/A
    243 7f4v:bL (2.04) BS08 CLA ? GO:0005886 ... Q7NIE7 N/A
    244 7f4v:bL (2.04) BS09 CLA ? GO:0005886 ... Q7NIE7 N/A
    245 7f4v:cA (2.04) BS01 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    246 7f4v:cA (2.04) BS02 CL0 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    247 7f4v:cA (2.04) BS03 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    248 7f4v:cA (2.04) BS04 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    249 7f4v:cA (2.04) BS05 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    250 7f4v:cA (2.04) BS06 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    251 7f4v:cA (2.04) BS07 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    252 7f4v:cA (2.04) BS08 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    253 7f4v:cA (2.04) BS09 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    254 7f4v:cA (2.04) BS10 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    255 7f4v:cA (2.04) BS11 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    256 7f4v:cA (2.04) BS12 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    257 7f4v:cA (2.04) BS13 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    258 7f4v:cA (2.04) BS14 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    259 7f4v:cA (2.04) BS15 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    260 7f4v:cA (2.04) BS16 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    261 7f4v:cA (2.04) BS17 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    262 7f4v:cA (2.04) BS18 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    263 7f4v:cA (2.04) BS19 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    264 7f4v:cA (2.04) BS20 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    265 7f4v:cA (2.04) BS21 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    266 7f4v:cA (2.04) BS22 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    267 7f4v:cA (2.04) BS23 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    268 7f4v:cA (2.04) BS24 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    269 7f4v:cA (2.04) BS25 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    270 7f4v:cA (2.04) BS26 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    271 7f4v:cA (2.04) BS27 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    272 7f4v:cA (2.04) BS28 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    273 7f4v:cA (2.04) BS29 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    274 7f4v:cA (2.04) BS30 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    275 7f4v:cA (2.04) BS31 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    276 7f4v:cA (2.04) BS32 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    277 7f4v:cA (2.04) BS33 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    278 7f4v:cA (2.04) BS34 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    279 7f4v:cA (2.04) BS35 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    280 7f4v:cA (2.04) BS36 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    281 7f4v:cA (2.04) BS37 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    282 7f4v:cA (2.04) BS38 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    283 7f4v:cA (2.04) BS39 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    284 7f4v:cA (2.04) BS40 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    285 7f4v:cA (2.04) BS41 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    286 7f4v:cA (2.04) BS42 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    287 7f4v:cA (2.04) BS43 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    288 7f4v:cA (2.04) BS44 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    289 7f4v:cA (2.04) BS45 1L3 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    290 7f4v:cA (2.04) BS46 SF4 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    291 7f4v:cA (2.04) BS47 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    292 7f4v:cA (2.04) BS48 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    293 7f4v:cA (2.04) BS49 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    294 7f4v:cA (2.04) BS50 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    295 7f4v:cA (2.04) BS51 CLA 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    296 7f4v:cB (2.04) BS01 peptide 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    297 7f4v:cB (2.04) BS02 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    298 7f4v:cB (2.04) BS03 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    299 7f4v:cB (2.04) BS04 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    300 7f4v:cB (2.04) BS05 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    301 7f4v:cB (2.04) BS06 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    302 7f4v:cB (2.04) BS07 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    303 7f4v:cB (2.04) BS08 SF4 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    304 7f4v:cB (2.04) BS09 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    305 7f4v:cB (2.04) BS10 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    306 7f4v:cB (2.04) BS11 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    307 7f4v:cB (2.04) BS12 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    308 7f4v:cB (2.04) BS13 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    309 7f4v:cB (2.04) BS14 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    310 7f4v:cB (2.04) BS15 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    311 7f4v:cB (2.04) BS16 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    312 7f4v:cB (2.04) BS17 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    313 7f4v:cB (2.04) BS18 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    314 7f4v:cB (2.04) BS19 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    315 7f4v:cB (2.04) BS20 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    316 7f4v:cB (2.04) BS21 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    317 7f4v:cB (2.04) BS22 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    318 7f4v:cB (2.04) BS23 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    319 7f4v:cB (2.04) BS24 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    320 7f4v:cB (2.04) BS25 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    321 7f4v:cB (2.04) BS26 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    322 7f4v:cB (2.04) BS27 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    323 7f4v:cB (2.04) BS28 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    324 7f4v:cB (2.04) BS29 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    325 7f4v:cB (2.04) BS30 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    326 7f4v:cB (2.04) BS31 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    327 7f4v:cB (2.04) BS32 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    328 7f4v:cB (2.04) BS33 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    329 7f4v:cB (2.04) BS34 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    330 7f4v:cB (2.04) BS35 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    331 7f4v:cB (2.04) BS36 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    332 7f4v:cB (2.04) BS37 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    333 7f4v:cB (2.04) BS38 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    334 7f4v:cB (2.04) BS39 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    335 7f4v:cB (2.04) BS40 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    336 7f4v:cB (2.04) BS41 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    337 7f4v:cB (2.04) BS42 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    338 7f4v:cB (2.04) BS43 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    339 7f4v:cB (2.04) BS44 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    340 7f4v:cB (2.04) BS45 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    341 7f4v:cB (2.04) BS46 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    342 7f4v:cB (2.04) BS47 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    343 7f4v:cB (2.04) BS48 1L3 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    344 7f4v:cB (2.04) BS49 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    345 7f4v:cB (2.04) BS50 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    346 7f4v:cC (2.04) BS01 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    347 7f4v:cC (2.04) BS02 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    348 7f4v:cF (2.04) BS01 CLA ? GO:0009522 ... Q7NH05 N/A
    349 7f4v:cF (2.04) BS02 CLA ? GO:0009522 ... Q7NH05 N/A
    350 7f4v:cF (2.04) BS03 CLA ? GO:0009522 ... Q7NH05 N/A
    351 7f4v:cF (2.04) BS04 CLA ? GO:0009522 ... Q7NH05 N/A
    352 7f4v:cF (2.04) BS05 CLA ? GO:0009522 ... Q7NH05 N/A
    353 7f4v:cF (2.04) BS06 CLA ? GO:0009522 ... Q7NH05 N/A
    354 7f4v:cI (2.04) BS01 CLA ? GO:0005886 ... P0C029 N/A
    355 7f4v:cJ (2.04) BS01 CLA N/A N/A N/A N/A
    356 7f4v:cJ (2.04) BS02 CLA N/A N/A N/A N/A
    357 7f4v:cJ (2.04) BS03 CLA N/A N/A N/A N/A
    358 7f4v:cL (2.04) BS01 CLA ? GO:0005886 ... Q7NIE7 N/A
    359 7f4v:cL (2.04) BS02 CLA ? GO:0005886 ... Q7NIE7 N/A
    360 7f4v:cL (2.04) BS03 CLA ? GO:0005886 ... Q7NIE7 N/A
    361 7f4v:cL (2.04) BS04 CLA ? GO:0005886 ... Q7NIE7 N/A
    362 7f4v:cL (2.04) BS05 CLA ? GO:0005886 ... Q7NIE7 N/A
    363 7f4v:cL (2.04) BS06 CLA ? GO:0005886 ... Q7NIE7 N/A
    364 7f4v:cL (2.04) BS07 CLA ? GO:0005886 ... Q7NIE7 N/A
    365 7f4v:cL (2.04) BS08 CLA ? GO:0005886 ... Q7NIE7 N/A
    366 7f4v:cL (2.04) BS09 CLA ? GO:0005886 ... Q7NIE7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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