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BioLiP
Download all results in tab-seperated text for 294 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6sv4:YM (3.3) BS01 rna ? GO:0000027 ... Q02326 32203490
    202 6sv4:YN (3.3) BS01 rna ? GO:0002181 ... P87262 32203490
    203 6sv4:YO (3.3) BS01 rna ? GO:0000463 ... P05737 32203490
    204 6sv4:YO (3.3) BS02 rna ? GO:0000463 ... P05737 32203490
    205 6sv4:YP (3.3) BS01 rna ? GO:0000463 ... P0CX84 32203490
    206 6sv4:YP (3.3) BS02 rna ? GO:0000463 ... P0CX84 32203490
    207 6sv4:YU (3.3) BS01 rna ? GO:0000027 ... P05317 32203490
    208 6sv4:Yb (3.3) BS01 rna ? GO:0000462 ... P05756 32203490
    209 6sv4:Yb (3.3) BS02 rna ? GO:0000462 ... P05756 32203490
    210 6sv4:Yc (3.3) BS01 rna ? GO:0000462 ... P05756 32203490
    211 6sv4:Z (3.3) BS01 rna ? GO:0000028 ... P06367 32203490
    212 6sv4:ZA (3.3) BS01 rna ? GO:0000027 ... P14126 32203490
    213 6sv4:ZB (3.3) BS01 rna ? GO:0002181 ... P0CX49 32203490
    214 6sv4:ZC (3.3) BS01 rna ? GO:0002181 ... P0C2H8 32203490
    215 6sv4:ZD (3.3) BS01 rna ? GO:0000027 ... P41805 32203490
    216 6sv4:ZD (3.3) BS02 rna ? GO:0000027 ... P41805 32203490
    217 6sv4:ZE (3.3) BS01 rna ? GO:0002181 ... P10664 32203490
    218 6sv4:ZE (3.3) BS02 rna ? GO:0002181 ... P10664 32203490
    219 6sv4:ZF (3.3) BS01 rna ? GO:0002181 ... P0CX82 32203490
    220 6sv4:ZF (3.3) BS02 rna ? GO:0002181 ... P0CX82 32203490
    221 6sv4:ZG (3.3) BS01 rna ? GO:0002181 ... P38061 32203490
    222 6sv4:ZH (3.3) BS01 rna ? GO:0002181 ... P0CX23 32203490
    223 6sv4:ZH (3.3) BS02 rna ? GO:0002181 ... P0CX23 32203490
    224 6sv4:ZI (3.3) BS01 rna ? GO:0000027 ... P26321 32203490
    225 6sv4:ZI (3.3) BS02 rna ? GO:0000027 ... P26321 32203490
    226 6sv4:ZJ (3.3) BS01 rna ? GO:0002181 ... Q02753 32203490
    227 6sv4:ZJ (3.3) BS02 rna ? GO:0002181 ... Q02753 32203490
    228 6sv4:ZK (3.3) BS01 rna ? GO:0000027 ... P05744 32203490
    229 6sv4:ZL (3.3) BS01 rna ? GO:0002181 ... P05749 32203490
    230 6sv4:ZM (3.3) BS01 rna ? GO:0000027 ... Q02326 32203490
    231 6sv4:ZN (3.3) BS01 rna ? GO:0002181 ... P87262 32203490
    232 6sv4:ZO (3.3) BS01 rna ? GO:0000463 ... P05737 32203490
    233 6sv4:ZO (3.3) BS02 rna ? GO:0000463 ... P05737 32203490
    234 6sv4:ZP (3.3) BS01 rna ? GO:0000463 ... P0CX84 32203490
    235 6sv4:ZP (3.3) BS02 rna ? GO:0000463 ... P0CX84 32203490
    236 6sv4:ZU (3.3) BS01 rna ? GO:0000027 ... P05317 32203490
    237 6sv4:Zb (3.3) BS01 rna ? GO:0000028 ... P06367 32203490
    238 6sv4:Zc (3.3) BS01 rna ? GO:0000028 ... P06367 32203490
    239 6sv4:a (3.3) BS01 rna ? GO:0000447 ... P0C0V8 32203490
    240 6sv4:b (3.3) BS01 rna ? GO:0002181 ... P0C0W1 32203490
    241 6sv4:bb (3.3) BS01 rna ? GO:0002181 ... P0C0W1 32203490
    242 6sv4:bc (3.3) BS01 rna ? GO:0002181 ... P0C0W1 32203490
    243 6sv4:c (3.3) BS01 rna ? GO:0000462 ... P0CX29 32203490
    244 6sv4:cb (3.3) BS01 rna ? GO:0000462 ... P0CX29 32203490
    245 6sv4:cc (3.3) BS01 rna ? GO:0000462 ... P0CX29 32203490
    246 6sv4:d (3.3) BS01 rna ? GO:0000462 ... P0CX31 32203490
    247 6sv4:db (3.3) BS01 rna ? GO:0000462 ... P0CX31 32203490
    248 6sv4:dc (3.3) BS01 rna ? GO:0000462 ... P0CX31 32203490
    249 6sv4:e (3.3) BS01 rna ? GO:0000054 ... P39938 32203490
    250 6sv4:eb (3.3) BS01 rna ? GO:0000054 ... P39938 32203490
    251 6sv4:ec (3.3) BS01 rna ? GO:0000054 ... P39938 32203490
    252 6sv4:f (3.3) BS01 rna ? GO:0000028 ... P35997 32203490
    253 6sv4:fb (3.3) BS01 rna ? GO:0000028 ... P35997 32203490
    254 6sv4:fc (3.3) BS01 rna ? GO:0000028 ... P35997 32203490
    255 6sv4:g (3.3) BS01 rna ? GO:0002181 ... P0CX33 32203490
    256 6sv4:gb (3.3) BS01 rna ? GO:0002181 ... P0CX33 32203490
    257 6sv4:gc (3.3) BS01 rna ? GO:0002181 ... P0CX33 32203490
    258 6sv4:zA (3.3) BS01 rna ? GO:0000470 ... P17076 32203490
    259 6sv4:zA (3.3) BS02 rna ? GO:0000470 ... P17076 32203490
    260 6sv4:zB (3.3) BS01 rna ? GO:0002181 ... P0CX41 32203490
    261 6sv4:zB (3.3) BS02 rna ? GO:0002181 ... P0CX41 32203490
    262 6sv4:zC (3.3) BS01 rna ? GO:0002181 ... P05745 32203490
    263 6sv4:zD (3.3) BS01 rna ? GO:0002181 ... P05738 32203490
    264 6sv4:zE (3.3) BS01 rna ? N/A P04449 32203490
    265 6sv4:zE (3.3) BS02 rna ? N/A P04449 32203490
    266 6sv4:zF (3.3) BS01 rna ? GO:0000448 ... P49166 32203490
    267 6sv4:zF (3.3) BS02 rna ? GO:0000448 ... P49166 32203490
    268 6sv4:zG (3.3) BS01 rna ? GO:0000027 ... P0C0W9 32203490
    269 6sv4:zG (3.3) BS02 rna ? GO:0000027 ... P0C0W9 32203490
    270 6sv4:zH (3.3) BS01 rna ? GO:0000027 ... P04456 32203490
    271 6sv4:zH (3.3) BS02 rna ? GO:0000027 ... P04456 32203490
    272 6sv4:zI (3.3) BS01 rna ? GO:0002181 ... P49167 32203490
    273 6sv4:zJ (3.3) BS01 rna ? GO:0002181 ... Q12690 32203490
    274 6sv4:zJ (3.3) BS02 rna ? GO:0002181 ... Q12690 32203490
    275 6sv4:zK (3.3) BS01 rna ? GO:0002181 ... P05743 32203490
    276 6sv4:zK (3.3) BS02 rna ? GO:0002181 ... P05743 32203490
    277 6sv4:zL (3.3) BS01 rna ? GO:0002181 ... P04650 32203490
    278 6sv4:zL (3.3) BS02 rna ? GO:0002181 ... P04650 32203490
    279 6sv4:zM (3.3) BS01 rna ? GO:0000027 ... P36105 32203490
    280 6sv4:zN (3.3) BS01 rna ? GO:0002181 ... P0C2H6 32203490
    281 6sv4:zO (3.3) BS01 rna ? GO:0000027 ... P0CH08 32203490
    282 6sv4:zP (3.3) BS01 rna ? GO:0002181 ... P0CX27 32203490
    283 6sv4:zP (3.3) BS02 rna ? GO:0002181 ... P0CX27 32203490
    284 6sv4:zQ (3.3) BS01 rna ? GO:0002181 ... P05748 32203490
    285 6sv4:zQ (3.3) BS02 rna ? GO:0002181 ... P05748 32203490
    286 6sv4:zR (3.3) BS01 rna ? GO:0002181 ... P02406 32203490
    287 6sv4:zT (3.3) BS01 rna ? GO:0002181 ... P0CX25 32203490
    288 6sv4:zU (3.3) BS01 rna ? GO:0000470 ... P26784 32203490
    289 6sv4:zV (3.3) BS01 rna ? GO:0002181 ... P05747 32203490
    290 6sv4:zW (3.3) BS01 rna ? GO:0002181 ... P0CX45 32203490
    291 6sv4:zW (3.3) BS02 rna ? GO:0002181 ... P0CX45 32203490
    292 6sv4:zX (3.3) BS01 rna ? GO:0000448 ... P05740 32203490
    293 6sv4:zX (3.3) BS02 rna ? GO:0000448 ... P05740 32203490
    294 6sv4:zY (3.3) BS01 rna ? GO:0002181 ... P14120 32203490
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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