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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 366 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6pnj:H (3.19) BS48 F6C 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    202 6pnj:H (3.19) BS49 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    203 6pnj:H (3.19) BS50 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    204 6pnj:H (3.19) BS51 PQN 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    205 6pnj:I (3.19) BS01 CLA N/A GO:0009522 ... N/A N/A
    206 6pnj:I (3.19) BS02 CLA N/A GO:0009522 ... N/A N/A
    207 6pnj:J (3.19) BS01 F6C ? GO:0009522 ... G6FMD2 N/A
    208 6pnj:K (3.19) BS01 CLA ? GO:0009522 ... G6FV28 N/A
    209 6pnj:L (3.19) BS01 CLA ? GO:0009522 ... G6FMF1 N/A
    210 6pnj:L (3.19) BS02 CLA ? GO:0009522 ... G6FMF1 N/A
    211 6pnj:L (3.19) BS03 CLA ? GO:0009522 ... G6FMF1 N/A
    212 6pnj:L (3.19) BS04 CLA ? GO:0009522 ... G6FMF1 N/A
    213 6pnj:L (3.19) BS05 CLA ? GO:0009522 ... G6FMF1 N/A
    214 6pnj:L (3.19) BS06 CA ? GO:0009522 ... G6FMF1 N/A
    215 6pnj:L (3.19) BS07 CLA ? GO:0009522 ... G6FMF1 N/A
    216 6pnj:L (3.19) BS08 CLA ? GO:0009522 ... G6FMF1 N/A
    217 6pnj:L (3.19) BS09 CLA ? GO:0009522 ... G6FMF1 N/A
    218 6pnj:L (3.19) BS10 CLA ? GO:0009522 ... G6FMF1 N/A
    219 6pnj:L (3.19) BS11 CLA ? GO:0009522 ... G6FMF1 N/A
    220 6pnj:M (3.19) BS01 CLA ? GO:0009522 ... G6FWT6 N/A
    221 6pnj:M (3.19) BS02 CLA ? GO:0009522 ... G6FWT6 N/A
    222 6pnj:N (3.19) BS01 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    223 6pnj:N (3.19) BS02 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    224 6pnj:Q (3.19) BS01 peptide ? GO:0009522 ... G6FMD3 N/A
    225 6pnj:Q (3.19) BS02 CLA ? GO:0009522 ... G6FMD3 N/A
    226 6pnj:Q (3.19) BS03 CLA ? GO:0009522 ... G6FMD3 N/A
    227 6pnj:R (3.19) BS01 CLA N/A GO:0009522 ... N/A N/A
    228 6pnj:R (3.19) BS02 CLA N/A GO:0009522 ... N/A N/A
    229 6pnj:S (3.19) BS01 CLA ? GO:0009522 ... G6FMD2 N/A
    230 6pnj:S (3.19) BS02 F6C ? GO:0009522 ... G6FMD2 N/A
    231 6pnj:T (3.19) BS01 CLA ? GO:0009522 ... G6FV28 N/A
    232 6pnj:U (3.19) BS01 CLA ? GO:0009522 ... G6FMF1 N/A
    233 6pnj:U (3.19) BS02 CLA ? GO:0009522 ... G6FMF1 N/A
    234 6pnj:U (3.19) BS03 CLA ? GO:0009522 ... G6FMF1 N/A
    235 6pnj:U (3.19) BS04 CLA ? GO:0009522 ... G6FMF1 N/A
    236 6pnj:U (3.19) BS05 CLA ? GO:0009522 ... G6FMF1 N/A
    237 6pnj:U (3.19) BS06 CLA ? GO:0009522 ... G6FMF1 N/A
    238 6pnj:U (3.19) BS07 CA ? GO:0009522 ... G6FMF1 N/A
    239 6pnj:U (3.19) BS08 CLA ? GO:0009522 ... G6FMF1 N/A
    240 6pnj:U (3.19) BS09 CLA ? GO:0009522 ... G6FMF1 N/A
    241 6pnj:U (3.19) BS10 CLA ? GO:0009522 ... G6FMF1 N/A
    242 6pnj:U (3.19) BS11 CLA ? GO:0009522 ... G6FMF1 N/A
    243 6pnj:V (3.19) BS01 CLA ? GO:0009522 ... G6FWT6 N/A
    244 6pnj:V (3.19) BS02 CLA ? GO:0009522 ... G6FWT6 N/A
    245 6pnj:a (3.19) BS01 CL0 1.97.1.12 GO:0000287 ... G6FME9 N/A
    246 6pnj:a (3.19) BS02 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    247 6pnj:a (3.19) BS03 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    248 6pnj:a (3.19) BS04 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    249 6pnj:a (3.19) BS05 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    250 6pnj:a (3.19) BS06 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    251 6pnj:a (3.19) BS07 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    252 6pnj:a (3.19) BS08 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    253 6pnj:a (3.19) BS09 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    254 6pnj:a (3.19) BS10 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    255 6pnj:a (3.19) BS11 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    256 6pnj:a (3.19) BS12 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    257 6pnj:a (3.19) BS13 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    258 6pnj:a (3.19) BS14 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    259 6pnj:a (3.19) BS15 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    260 6pnj:a (3.19) BS16 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    261 6pnj:a (3.19) BS17 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    262 6pnj:a (3.19) BS18 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    263 6pnj:a (3.19) BS19 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    264 6pnj:a (3.19) BS20 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    265 6pnj:a (3.19) BS21 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    266 6pnj:a (3.19) BS22 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    267 6pnj:a (3.19) BS23 F6C 1.97.1.12 GO:0000287 ... G6FME9 N/A
    268 6pnj:a (3.19) BS24 F6C 1.97.1.12 GO:0000287 ... G6FME9 N/A
    269 6pnj:a (3.19) BS25 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    270 6pnj:a (3.19) BS26 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    271 6pnj:a (3.19) BS27 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    272 6pnj:a (3.19) BS28 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    273 6pnj:a (3.19) BS29 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    274 6pnj:a (3.19) BS30 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    275 6pnj:a (3.19) BS31 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    276 6pnj:a (3.19) BS32 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    277 6pnj:a (3.19) BS33 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    278 6pnj:a (3.19) BS34 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    279 6pnj:a (3.19) BS35 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    280 6pnj:a (3.19) BS36 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    281 6pnj:a (3.19) BS37 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    282 6pnj:a (3.19) BS38 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    283 6pnj:a (3.19) BS39 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    284 6pnj:a (3.19) BS40 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    285 6pnj:a (3.19) BS41 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    286 6pnj:a (3.19) BS42 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    287 6pnj:a (3.19) BS43 PQN 1.97.1.12 GO:0000287 ... G6FME9 N/A
    288 6pnj:a (3.19) BS44 SF4 1.97.1.12 GO:0000287 ... G6FME9 N/A
    289 6pnj:a (3.19) BS45 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    290 6pnj:a (3.19) BS46 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    291 6pnj:a (3.19) BS47 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    292 6pnj:a (3.19) BS48 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    293 6pnj:a (3.19) BS49 CLA 1.97.1.12 GO:0000287 ... G6FME9 N/A
    294 6pnj:b (3.19) BS01 peptide 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    295 6pnj:b (3.19) BS02 CL0 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    296 6pnj:b (3.19) BS03 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    297 6pnj:b (3.19) BS04 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    298 6pnj:b (3.19) BS05 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    299 6pnj:b (3.19) BS06 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    300 6pnj:b (3.19) BS07 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    301 6pnj:b (3.19) BS08 SF4 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    302 6pnj:b (3.19) BS09 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    303 6pnj:b (3.19) BS10 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    304 6pnj:b (3.19) BS11 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    305 6pnj:b (3.19) BS12 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    306 6pnj:b (3.19) BS13 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    307 6pnj:b (3.19) BS14 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    308 6pnj:b (3.19) BS15 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    309 6pnj:b (3.19) BS16 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    310 6pnj:b (3.19) BS17 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    311 6pnj:b (3.19) BS18 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    312 6pnj:b (3.19) BS19 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    313 6pnj:b (3.19) BS20 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    314 6pnj:b (3.19) BS21 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    315 6pnj:b (3.19) BS22 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    316 6pnj:b (3.19) BS23 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    317 6pnj:b (3.19) BS24 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    318 6pnj:b (3.19) BS25 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    319 6pnj:b (3.19) BS26 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    320 6pnj:b (3.19) BS27 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    321 6pnj:b (3.19) BS28 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    322 6pnj:b (3.19) BS29 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    323 6pnj:b (3.19) BS30 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    324 6pnj:b (3.19) BS31 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    325 6pnj:b (3.19) BS32 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    326 6pnj:b (3.19) BS33 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    327 6pnj:b (3.19) BS34 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    328 6pnj:b (3.19) BS35 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    329 6pnj:b (3.19) BS36 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    330 6pnj:b (3.19) BS37 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    331 6pnj:b (3.19) BS38 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    332 6pnj:b (3.19) BS39 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    333 6pnj:b (3.19) BS40 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    334 6pnj:b (3.19) BS41 F6C 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    335 6pnj:b (3.19) BS42 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    336 6pnj:b (3.19) BS43 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    337 6pnj:b (3.19) BS44 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    338 6pnj:b (3.19) BS45 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    339 6pnj:b (3.19) BS46 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    340 6pnj:b (3.19) BS47 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    341 6pnj:b (3.19) BS48 F6C 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    342 6pnj:b (3.19) BS49 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    343 6pnj:b (3.19) BS50 CLA 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    344 6pnj:b (3.19) BS51 PQN 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    345 6pnj:c (3.19) BS01 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    346 6pnj:c (3.19) BS02 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    347 6pnj:f (3.19) BS01 peptide ? GO:0009522 ... G6FMD3 N/A
    348 6pnj:f (3.19) BS02 CLA ? GO:0009522 ... G6FMD3 N/A
    349 6pnj:i (3.19) BS01 CLA N/A GO:0009522 ... N/A N/A
    350 6pnj:i (3.19) BS02 CLA N/A GO:0009522 ... N/A N/A
    351 6pnj:j (3.19) BS01 CLA ? GO:0009522 ... G6FMD2 N/A
    352 6pnj:j (3.19) BS02 F6C ? GO:0009522 ... G6FMD2 N/A
    353 6pnj:k (3.19) BS01 CLA ? GO:0009522 ... G6FV28 N/A
    354 6pnj:l (3.19) BS01 CLA ? GO:0009522 ... G6FMF1 N/A
    355 6pnj:l (3.19) BS02 CLA ? GO:0009522 ... G6FMF1 N/A
    356 6pnj:l (3.19) BS03 CLA ? GO:0009522 ... G6FMF1 N/A
    357 6pnj:l (3.19) BS04 CLA ? GO:0009522 ... G6FMF1 N/A
    358 6pnj:l (3.19) BS05 CLA ? GO:0009522 ... G6FMF1 N/A
    359 6pnj:l (3.19) BS06 CLA ? GO:0009522 ... G6FMF1 N/A
    360 6pnj:l (3.19) BS07 CLA ? GO:0009522 ... G6FMF1 N/A
    361 6pnj:l (3.19) BS08 CA ? GO:0009522 ... G6FMF1 N/A
    362 6pnj:l (3.19) BS09 CLA ? GO:0009522 ... G6FMF1 N/A
    363 6pnj:l (3.19) BS10 CLA ? GO:0009522 ... G6FMF1 N/A
    364 6pnj:l (3.19) BS11 CLA ? GO:0009522 ... G6FMF1 N/A
    365 6pnj:m (3.19) BS01 CLA ? GO:0009522 ... G6FWT6 N/A
    366 6pnj:m (3.19) BS02 CLA ? GO:0009522 ... G6FWT6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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