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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    58801 1w3t:D (2.1) BS02 PYR 4.1.2.55 GO:0008674 ... O54288 15265860
    58802 1w3t:D (2.1) BS03 3GR 4.1.2.55 GO:0008674 ... O54288 15265860
    58803 1w3u:A (1.5) BS01 PLP 2.6.1.52 GO:0004648 ... Q59196 15608117
    58804 1w3v:A (1.4) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 16444759
    58805 1w3v:A (1.4) BS02 MDZ 1.21.3.1 GO:0005506 ... P05326 16444759
    58806 1w3w:A (1.99) BS01 CA ? GO:0001786 ... P13928 15644210
    58807 1w3x:A (1.46) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 16444759
    58808 1w3x:A (1.46) BS02 W2X 1.21.3.1 GO:0005506 ... P05326 16444759
    58809 1w3y:A (1.65) BS01 PVC 4.2.2.1 GO:0003824 ... Q54873 15322107 MOAD: ic50=100uM
    58810 1w3y:A (1.65) BS02 XYL 4.2.2.1 GO:0003824 ... Q54873 15322107
    58811 1w3y:A (1.65) BS03 XYL 4.2.2.1 GO:0003824 ... Q54873 15322107
    58812 1w44:A (2.0) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58813 1w44:A (2.0) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    58814 1w44:B (2.0) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58815 1w44:B (2.0) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    58816 1w44:C (2.0) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58817 1w46:A (2.7) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58818 1w46:A (2.7) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    58819 1w46:B (2.7) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58820 1w46:B (2.7) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    58821 1w46:C (2.7) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58822 1w47:A (2.5) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58823 1w47:A (2.5) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    58824 1w47:B (2.5) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58825 1w47:B (2.5) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    58826 1w47:C (2.5) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58827 1w48:A (2.3) BS01 APC ? GO:0005524 ... Q94M05 15369673
    58828 1w48:A (2.3) BS02 APC ? GO:0005524 ... Q94M05 15369673
    58829 1w48:B (2.3) BS01 APC ? GO:0005524 ... Q94M05 15369673
    58830 1w48:B (2.3) BS02 APC ? GO:0005524 ... Q94M05 15369673
    58831 1w48:C (2.3) BS01 APC ? GO:0005524 ... Q94M05 15369673
    58832 1w49:A (2.4) BS01 APC ? GO:0005524 ... Q94M05 15369673
    58833 1w49:A (2.4) BS02 APC ? GO:0005524 ... Q94M05 15369673
    58834 1w49:B (2.4) BS01 APC ? GO:0005524 ... Q94M05 15369673
    58835 1w49:B (2.4) BS02 APC ? GO:0005524 ... Q94M05 15369673
    58836 1w49:C (2.4) BS01 APC ? GO:0005524 ... Q94M05 15369673
    58837 1w4a:A (2.4) BS01 APC ? GO:0005524 ... Q94M05 15369673
    58838 1w4a:A (2.4) BS02 APC ? GO:0005524 ... Q94M05 15369673
    58839 1w4a:B (2.4) BS01 APC ? GO:0005524 ... Q94M05 15369673
    58840 1w4a:B (2.4) BS02 APC ? GO:0005524 ... Q94M05 15369673
    58841 1w4a:C (2.4) BS01 APC ? GO:0005524 ... Q94M05 15369673
    58842 1w4b:A (2.3) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58843 1w4b:A (2.3) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    58844 1w4b:B (2.3) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58845 1w4b:B (2.3) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    58846 1w4b:C (2.3) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    58847 1w4l:A (2.16) BS01 GL8 3.1.1.7 GO:0001507 ... P04058 15563167 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4nM
    58848 1w4n:A (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 18607080
    58849 1w4n:B (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 18607080
    58850 1w4o:A (1.6) BS01 UA3 4.6.1.18 GO:0003676 ... P61823 15670155 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.22, Ki=6uM
    BindingDB: Ki=6000nM
    58851 1w4p:A (1.69) BS01 UM3 4.6.1.18 GO:0003676 ... P61823 15670155 MOAD: Ki=18uM
    PDBbind: -logKd/Ki=4.74, Ki=18uM
    58852 1w4p:B (1.69) BS01 UM3 4.6.1.18 GO:0003676 ... P61823 15670155 MOAD: Ki=18uM
    58853 1w4q:A (1.68) BS01 UMF 4.6.1.18 GO:0003676 ... P61823 15670155 MOAD: Ki=5.5uM
    PDBbind: -logKd/Ki=5.26, Ki=5.5uM
    58854 1w4q:B (1.68) BS01 UMF 4.6.1.18 GO:0003676 ... P61823 15670155 MOAD: Ki=5.5uM
    58855 1w4r:A (1.83) BS01 TTP 2.7.1.21 GO:0004797 ... P04183 15733844
    58856 1w4r:A (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    58857 1w4r:B (1.83) BS01 TTP 2.7.1.21 GO:0004797 ... P04183 15733844
    58858 1w4r:B (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    58859 1w4r:C (1.83) BS01 TTP 2.7.1.21 GO:0004797 ... P04183 15733844
    58860 1w4r:C (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    58861 1w4r:D (1.83) BS01 TTP 2.7.1.21 GO:0004797 ... P04183 15733844
    58862 1w4r:D (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    58863 1w4r:E (1.83) BS01 TTP 2.7.1.21 GO:0004797 ... P04183 15733844
    58864 1w4r:E (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    58865 1w4r:F (1.83) BS01 TTP 2.7.1.21 GO:0004797 ... P04183 15733844
    58866 1w4r:F (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    58867 1w4r:G (1.83) BS01 TTP 2.7.1.21 GO:0004797 ... P04183 15733844
    58868 1w4r:G (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    58869 1w4r:H (1.83) BS01 TTP 2.7.1.21 GO:0004797 ... P04183 15733844
    58870 1w4r:H (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    58871 1w4w:A (1.55) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 15641789
    58872 1w4w:A (1.55) BS02 CA 1.11.1.7 GO:0004601 ... P00433 15641789
    58873 1w4w:A (1.55) BS03 CA 1.11.1.7 GO:0004601 ... P00433 15641789
    58874 1w4x:A (1.7) BS01 FAD 1.14.13.92 GO:0004497 ... Q47PU3 15328411
    58875 1w4y:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 15641789
    58876 1w4y:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 15641789
    58877 1w4y:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 15641789
    58878 1w4y:A (1.6) BS04 CMO 1.11.1.7 GO:0004601 ... P00433 15641789
    58879 1w4z:A (2.5) BS01 NAP 1.3.1.- GO:0008202 ... P16544 15458634
    58880 1w4z:B (2.5) BS01 NAP 1.3.1.- GO:0008202 ... P16544 15458634
    58881 1w51:A (2.55) BS01 L01 3.4.23.46 GO:0004190 ... P56817 15451669 PDBbind: -logKd/Ki=6.30, IC50=500nM
    BindingDB: IC50=500nM
    58882 1w52:X (2.99) BS01 CA 3.1.1.26
    3.1.1.3
    GO:0004806 ... Q95KP4 15502342
    58883 1w52:X (2.99) BS02 CA 3.1.1.26
    3.1.1.3
    GO:0004806 ... Q95KP4 15502342
    58884 1w54:A (2.2) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    58885 1w55:A (2.3) BS01 C 2.7.7.60
    4.6.1.12
    GO:0003824 ... Q9PM68 15466439
    58886 1w55:A (2.3) BS02 C 2.7.7.60
    4.6.1.12
    GO:0003824 ... Q9PM68 15466439
    58887 1w55:A (2.3) BS03 GPP 2.7.7.60
    4.6.1.12
    GO:0003824 ... Q9PM68 15466439
    58888 1w56:A (1.7) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    58889 1w56:B (1.7) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    58890 1w57:A (3.09) BS01 ZN 2.7.7.60
    4.6.1.12
    GO:0003824 ... Q9PM68 15466439
    58891 1w57:A (3.09) BS02 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... Q9PM68 15466439
    58892 1w57:A (3.09) BS03 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... Q9PM68 15466439
    58893 1w57:A (3.09) BS04 GPP 2.7.7.60
    4.6.1.12
    GO:0003824 ... Q9PM68 15466439
    58894 1w58:1 (2.5) BS01 G2P ? GO:0000917 ... Q57816 15558053
    58895 1w5a:A (2.4) BS01 GTP ? GO:0000917 ... Q57816 15558053
    58896 1w5a:B (2.4) BS01 GTP ? GO:0000917 ... Q57816 15558053
    58897 1w5b:A (2.2) BS01 GTP ? GO:0000917 ... Q57816 15558053
    58898 1w5b:B (2.2) BS01 GTP ? GO:0000917 ... Q57816 15558053
    58899 1w5c:A (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58900 1w5c:A (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58901 1w5c:A (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58902 1w5c:A (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 N/A
    58903 1w5c:A (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58904 1w5c:A (3.2) BS06 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    58905 1w5c:A (3.2) BS07 FE2 1.10.3.9 GO:0005506 ... P0A444 N/A
    58906 1w5c:A (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58907 1w5c:A (3.2) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 N/A
    58908 1w5c:B (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58909 1w5c:B (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58910 1w5c:B (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58911 1w5c:B (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58912 1w5c:B (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58913 1w5c:B (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58914 1w5c:B (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58915 1w5c:B (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58916 1w5c:B (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58917 1w5c:B (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58918 1w5c:B (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58919 1w5c:B (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58920 1w5c:B (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58921 1w5c:B (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58922 1w5c:C (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 N/A
    58923 1w5c:C (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 N/A
    58924 1w5c:C (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 N/A
    58925 1w5c:C (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 N/A
    58926 1w5c:C (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 N/A
    58927 1w5c:C (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 N/A
    58928 1w5c:C (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 N/A
    58929 1w5c:C (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 N/A
    58930 1w5c:C (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 N/A
    58931 1w5c:C (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 N/A
    58932 1w5c:C (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 N/A
    58933 1w5c:C (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 N/A
    58934 1w5c:C (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 N/A
    58935 1w5c:D (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58936 1w5c:D (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58937 1w5c:D (3.2) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58938 1w5c:D (3.2) BS04 FE2 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58939 1w5c:D (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58940 1w5c:D (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58941 1w5c:D (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58942 1w5c:D (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58943 1w5c:E (3.2) BS01 HEM ? GO:0005506 ... Q8DIP0 N/A
    58944 1w5c:F (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 N/A
    58945 1w5c:G (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58946 1w5c:G (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58947 1w5c:G (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58948 1w5c:G (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 N/A
    58949 1w5c:G (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58950 1w5c:G (3.2) BS06 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    58951 1w5c:G (3.2) BS07 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    58952 1w5c:G (3.2) BS08 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    58953 1w5c:G (3.2) BS09 FE2 1.10.3.9 GO:0005506 ... P0A444 N/A
    58954 1w5c:G (3.2) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    58955 1w5c:G (3.2) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 N/A
    58956 1w5c:H (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58957 1w5c:H (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58958 1w5c:H (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58959 1w5c:H (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58960 1w5c:H (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58961 1w5c:H (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58962 1w5c:H (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58963 1w5c:H (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58964 1w5c:H (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58965 1w5c:H (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58966 1w5c:H (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58967 1w5c:H (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58968 1w5c:H (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58969 1w5c:H (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 N/A
    58970 1w5c:I (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 N/A
    58971 1w5c:I (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 N/A
    58972 1w5c:I (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 N/A
    58973 1w5c:I (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 N/A
    58974 1w5c:I (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 N/A
    58975 1w5c:I (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 N/A
    58976 1w5c:I (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 N/A
    58977 1w5c:I (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 N/A
    58978 1w5c:I (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 N/A
    58979 1w5c:I (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 N/A
    58980 1w5c:I (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 N/A
    58981 1w5c:I (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 N/A
    58982 1w5c:I (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 N/A
    58983 1w5c:J (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58984 1w5c:J (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58985 1w5c:J (3.2) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58986 1w5c:J (3.2) BS04 FE2 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58987 1w5c:J (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58988 1w5c:J (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58989 1w5c:J (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58990 1w5c:J (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    58991 1w5c:K (3.2) BS01 HEM ? GO:0005506 ... Q8DIP0 N/A
    58992 1w5c:L (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 N/A
    58993 1w5c:T (3.2) BS01 HEC ? GO:0005506 ... P0A386 N/A
    58994 1w5c:V (3.2) BS01 HEC ? GO:0005506 ... P0A386 N/A
    58995 1w5d:A (2.1) BS01 CA 3.4.16.4 GO:0000270 ... P39844 17582436
    58996 1w5d:A (2.1) BS02 CA 3.4.16.4 GO:0000270 ... P39844 17582436
    58997 1w5e:A (3.0) BS01 GTP ? GO:0000917 ... Q57816 15558053
    58998 1w5e:B (3.0) BS01 GTP ? GO:0000917 ... Q57816 15558053
    58999 1w5e:C (3.0) BS01 GTP ? GO:0000917 ... Q57816 15558053
    59000 1w5e:D (3.0) BS01 GTP ? GO:0000917 ... Q57816 15558053

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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