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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    58001 1vy6:DY (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    58002 1vy6:DZ (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    58003 1vy6:DZ (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    58004 1vy7:AB (2.8) BS01 rna ? GO:0003735 ... P80371 25132179
    58005 1vy7:AC (2.8) BS01 rna ? GO:0003676 ... P80372 25132179
    58006 1vy7:AD (2.8) BS01 rna ? GO:0003723 ... P80373 25132179
    58007 1vy7:AD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25132179
    58008 1vy7:AE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    58009 1vy7:AE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    58010 1vy7:AE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    58011 1vy7:AF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    58012 1vy7:AG (2.8) BS01 rna ? GO:0000028 ... P17291 25132179
    58013 1vy7:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    58014 1vy7:AI (2.8) BS01 rna ? GO:0000049 ... P80374 25132179
    58015 1vy7:AI (2.8) BS02 rna ? GO:0000049 ... P80374 25132179
    58016 1vy7:AJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    58017 1vy7:AK (2.8) BS01 rna ? GO:0003735 ... P80376 25132179
    58018 1vy7:AK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    58019 1vy7:AL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    58020 1vy7:AL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    58021 1vy7:AM (2.8) BS01 rna ? GO:0000049 ... P80377 25132179
    58022 1vy7:AM (2.8) BS02 rna ? GO:0000049 ... P80377 25132179
    58023 1vy7:AM (2.8) BS03 rna ? GO:0000049 ... P80377 25132179
    58024 1vy7:AM (2.8) BS04 MG ? GO:0000049 ... P80377 25132179
    58025 1vy7:AN (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    58026 1vy7:AN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25132179
    58027 1vy7:AO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    58028 1vy7:AO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    58029 1vy7:AP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    58030 1vy7:AQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    58031 1vy7:AR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    58032 1vy7:AS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    58033 1vy7:AT (2.8) BS01 rna ? GO:0003723 ... P80380 25132179
    58034 1vy7:B0 (2.8) BS01 rna ? GO:0003735 ... P60493 25132179
    58035 1vy7:B0 (2.8) BS02 rna ? GO:0003735 ... P60493 25132179
    58036 1vy7:B0 (2.8) BS03 rna ? GO:0003735 ... P60493 25132179
    58037 1vy7:B0 (2.8) BS04 MG ? GO:0003735 ... P60493 25132179
    58038 1vy7:B0 (2.8) BS05 MG ? GO:0003735 ... P60493 25132179
    58039 1vy7:B0 (2.8) BS06 MG ? GO:0003735 ... P60493 25132179
    58040 1vy7:B1 (2.8) BS01 rna ? GO:0003735 ... P60494 25132179
    58041 1vy7:B1 (2.8) BS02 rna ? GO:0003735 ... P60494 25132179
    58042 1vy7:B1 (2.8) BS03 MG ? GO:0003735 ... P60494 25132179
    58043 1vy7:B2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    58044 1vy7:B3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    58045 1vy7:B3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    58046 1vy7:B3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    58047 1vy7:B4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    58048 1vy7:B4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    58049 1vy7:B5 (2.8) BS01 rna ? GO:0003735 ... P80339 25132179
    58050 1vy7:B5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    58051 1vy7:B5 (2.8) BS03 MG ? GO:0003735 ... P80339 25132179
    58052 1vy7:B5 (2.8) BS04 ZN ? GO:0003735 ... P80339 25132179
    58053 1vy7:B6 (2.8) BS01 rna ? GO:0000049 ... P35871 25132179
    58054 1vy7:B6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25132179
    58055 1vy7:B7 (2.8) BS01 rna ? GO:0003735 ... P80340 25132179
    58056 1vy7:B7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    58057 1vy7:B8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    58058 1vy7:B9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    58059 1vy7:B9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    58060 1vy7:BD (2.8) BS01 rna ? GO:0002181 ... P60405 25132179
    58061 1vy7:BD (2.8) BS02 rna ? GO:0002181 ... P60405 25132179
    58062 1vy7:BD (2.8) BS03 MG ? GO:0002181 ... P60405 25132179
    58063 1vy7:BD (2.8) BS04 MG ? GO:0002181 ... P60405 25132179
    58064 1vy7:BD (2.8) BS05 MG ? GO:0002181 ... P60405 25132179
    58065 1vy7:BD (2.8) BS06 MG ? GO:0002181 ... P60405 25132179
    58066 1vy7:BD (2.8) BS07 MG ? GO:0002181 ... P60405 25132179
    58067 1vy7:BD (2.8) BS08 MG ? GO:0002181 ... P60405 25132179
    58068 1vy7:BD (2.8) BS09 MG ? GO:0002181 ... P60405 25132179
    58069 1vy7:BD (2.8) BS10 MG ? GO:0002181 ... P60405 25132179
    58070 1vy7:BD (2.8) BS11 MG ? GO:0002181 ... P60405 25132179
    58071 1vy7:BD (2.8) BS12 MG ? GO:0002181 ... P60405 25132179
    58072 1vy7:BE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    58073 1vy7:BE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    58074 1vy7:BE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    58075 1vy7:BE (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    58076 1vy7:BE (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 25132179
    58077 1vy7:BF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    58078 1vy7:BF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    58079 1vy7:BF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    58080 1vy7:BF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    58081 1vy7:BF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    58082 1vy7:BF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    58083 1vy7:BG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    58084 1vy7:BG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    58085 1vy7:BG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25132179
    58086 1vy7:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    58087 1vy7:BI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    58088 1vy7:BN (2.8) BS01 rna ? GO:0003729 ... P60488 25132179
    58089 1vy7:BN (2.8) BS02 MG ? GO:0003729 ... P60488 25132179
    58090 1vy7:BN (2.8) BS03 MG ? GO:0003729 ... P60488 25132179
    58091 1vy7:BN (2.8) BS04 MG ? GO:0003729 ... P60488 25132179
    58092 1vy7:BO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    58093 1vy7:BO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    58094 1vy7:BP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    58095 1vy7:BP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    58096 1vy7:BP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    58097 1vy7:BQ (2.8) BS01 rna ? GO:0000049 ... P60489 25132179
    58098 1vy7:BQ (2.8) BS02 rna ? GO:0000049 ... P60489 25132179
    58099 1vy7:BQ (2.8) BS03 MG ? GO:0000049 ... P60489 25132179
    58100 1vy7:BQ (2.8) BS04 MG ? GO:0000049 ... P60489 25132179
    58101 1vy7:BQ (2.8) BS05 MG ? GO:0000049 ... P60489 25132179
    58102 1vy7:BQ (2.8) BS06 MG ? GO:0000049 ... P60489 25132179
    58103 1vy7:BR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    58104 1vy7:BR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    58105 1vy7:BR (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    58106 1vy7:BR (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 25132179
    58107 1vy7:BS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    58108 1vy7:BS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    58109 1vy7:BT (2.8) BS01 rna ? GO:0003735 ... P60490 25132179
    58110 1vy7:BT (2.8) BS02 rna ? GO:0003735 ... P60490 25132179
    58111 1vy7:BU (2.8) BS01 rna ? GO:0000027 ... P60491 25132179
    58112 1vy7:BU (2.8) BS02 MG ? GO:0000027 ... P60491 25132179
    58113 1vy7:BU (2.8) BS03 MG ? GO:0000027 ... P60491 25132179
    58114 1vy7:BU (2.8) BS04 MG ? GO:0000027 ... P60491 25132179
    58115 1vy7:BU (2.8) BS05 MG ? GO:0000027 ... P60491 25132179
    58116 1vy7:BU (2.8) BS06 MG ? GO:0000027 ... P60491 25132179
    58117 1vy7:BU (2.8) BS07 MG ? GO:0000027 ... P60491 25132179
    58118 1vy7:BU (2.8) BS08 MG ? GO:0000027 ... P60491 25132179
    58119 1vy7:BV (2.8) BS01 rna ? GO:0003723 ... P60492 25132179
    58120 1vy7:BV (2.8) BS02 MG ? GO:0003723 ... P60492 25132179
    58121 1vy7:BV (2.8) BS03 MG ? GO:0003723 ... P60492 25132179
    58122 1vy7:BV (2.8) BS04 MG ? GO:0003723 ... P60492 25132179
    58123 1vy7:BV (2.8) BS05 MG ? GO:0003723 ... P60492 25132179
    58124 1vy7:BV (2.8) BS06 MG ? GO:0003723 ... P60492 25132179
    58125 1vy7:BW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    58126 1vy7:BW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    58127 1vy7:BW (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    58128 1vy7:BX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    58129 1vy7:BX (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    58130 1vy7:BX (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 25132179
    58131 1vy7:BY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    58132 1vy7:BY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    58133 1vy7:BZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    58134 1vy7:BZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    58135 1vy7:CB (2.8) BS01 rna ? GO:0003735 ... P80371 25132179
    58136 1vy7:CC (2.8) BS01 rna ? GO:0003676 ... P80372 25132179
    58137 1vy7:CD (2.8) BS01 rna ? GO:0003723 ... P80373 25132179
    58138 1vy7:CD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25132179
    58139 1vy7:CE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    58140 1vy7:CE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    58141 1vy7:CE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    58142 1vy7:CF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    58143 1vy7:CF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    58144 1vy7:CG (2.8) BS01 rna ? GO:0000028 ... P17291 25132179
    58145 1vy7:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    58146 1vy7:CI (2.8) BS01 rna ? GO:0000049 ... P80374 25132179
    58147 1vy7:CI (2.8) BS02 rna ? GO:0000049 ... P80374 25132179
    58148 1vy7:CJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    58149 1vy7:CK (2.8) BS01 rna ? GO:0003735 ... P80376 25132179
    58150 1vy7:CK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    58151 1vy7:CL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    58152 1vy7:CM (2.8) BS01 rna ? GO:0000049 ... P80377 25132179
    58153 1vy7:CM (2.8) BS02 rna ? GO:0000049 ... P80377 25132179
    58154 1vy7:CN (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    58155 1vy7:CN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25132179
    58156 1vy7:CO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    58157 1vy7:CO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    58158 1vy7:CP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    58159 1vy7:CQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    58160 1vy7:CR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    58161 1vy7:CS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    58162 1vy7:CT (2.8) BS01 rna ? GO:0003723 ... P80380 25132179
    58163 1vy7:CT (2.8) BS02 MG ? GO:0003723 ... P80380 25132179
    58164 1vy7:D0 (2.8) BS01 rna ? GO:0003735 ... P60493 25132179
    58165 1vy7:D0 (2.8) BS02 rna ? GO:0003735 ... P60493 25132179
    58166 1vy7:D0 (2.8) BS03 rna ? GO:0003735 ... P60493 25132179
    58167 1vy7:D1 (2.8) BS01 rna ? GO:0003735 ... P60494 25132179
    58168 1vy7:D1 (2.8) BS02 rna ? GO:0003735 ... P60494 25132179
    58169 1vy7:D2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    58170 1vy7:D3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    58171 1vy7:D3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    58172 1vy7:D3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    58173 1vy7:D4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    58174 1vy7:D4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    58175 1vy7:D5 (2.8) BS01 rna ? GO:0003735 ... P80339 25132179
    58176 1vy7:D5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    58177 1vy7:D5 (2.8) BS03 ZN ? GO:0003735 ... P80339 25132179
    58178 1vy7:D6 (2.8) BS01 rna ? GO:0000049 ... P35871 25132179
    58179 1vy7:D6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25132179
    58180 1vy7:D7 (2.8) BS01 rna ? GO:0003735 ... P80340 25132179
    58181 1vy7:D7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    58182 1vy7:D8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    58183 1vy7:D9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    58184 1vy7:D9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    58185 1vy7:DD (2.8) BS01 rna ? GO:0002181 ... P60405 25132179
    58186 1vy7:DD (2.8) BS02 rna ? GO:0002181 ... P60405 25132179
    58187 1vy7:DD (2.8) BS03 MG ? GO:0002181 ... P60405 25132179
    58188 1vy7:DD (2.8) BS04 MG ? GO:0002181 ... P60405 25132179
    58189 1vy7:DD (2.8) BS05 MG ? GO:0002181 ... P60405 25132179
    58190 1vy7:DD (2.8) BS06 MG ? GO:0002181 ... P60405 25132179
    58191 1vy7:DD (2.8) BS07 MG ? GO:0002181 ... P60405 25132179
    58192 1vy7:DD (2.8) BS08 MG ? GO:0002181 ... P60405 25132179
    58193 1vy7:DE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    58194 1vy7:DE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    58195 1vy7:DE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    58196 1vy7:DF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    58197 1vy7:DF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    58198 1vy7:DF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    58199 1vy7:DF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    58200 1vy7:DF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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