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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    57601 1vy5:B0 (2.55) BS02 rna ? GO:0003735 ... P60493 25132179
    57602 1vy5:B0 (2.55) BS03 MG ? GO:0003735 ... P60493 25132179
    57603 1vy5:B1 (2.55) BS01 rna ? GO:0003735 ... P60494 25132179
    57604 1vy5:B1 (2.55) BS02 rna ? GO:0003735 ... P60494 25132179
    57605 1vy5:B1 (2.55) BS03 MG ? GO:0003735 ... P60494 25132179
    57606 1vy5:B2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    57607 1vy5:B3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    57608 1vy5:B3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    57609 1vy5:B3 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    57610 1vy5:B3 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 25132179
    57611 1vy5:B4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    57612 1vy5:B4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    57613 1vy5:B5 (2.55) BS01 rna ? GO:0003735 ... P80339 25132179
    57614 1vy5:B5 (2.55) BS02 MG ? GO:0003735 ... P80339 25132179
    57615 1vy5:B5 (2.55) BS03 MG ? GO:0003735 ... P80339 25132179
    57616 1vy5:B5 (2.55) BS04 ZN ? GO:0003735 ... P80339 25132179
    57617 1vy5:B6 (2.55) BS01 rna ? GO:0000049 ... P35871 25132179
    57618 1vy5:B6 (2.55) BS02 MG ? GO:0000049 ... P35871 25132179
    57619 1vy5:B6 (2.55) BS03 ZN ? GO:0000049 ... P35871 25132179
    57620 1vy5:B7 (2.55) BS01 rna ? GO:0003735 ... P80340 25132179
    57621 1vy5:B7 (2.55) BS02 MG ? GO:0003735 ... P80340 25132179
    57622 1vy5:B7 (2.55) BS03 MG ? GO:0003735 ... P80340 25132179
    57623 1vy5:B7 (2.55) BS04 MG ? GO:0003735 ... P80340 25132179
    57624 1vy5:B7 (2.55) BS05 MG ? GO:0003735 ... P80340 25132179
    57625 1vy5:B8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    57626 1vy5:B8 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    57627 1vy5:B8 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 25132179
    57628 1vy5:B9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    57629 1vy5:B9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    57630 1vy5:BD (2.55) BS01 rna ? GO:0002181 ... P60405 25132179
    57631 1vy5:BD (2.55) BS02 rna ? GO:0002181 ... P60405 25132179
    57632 1vy5:BD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    57633 1vy5:BD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    57634 1vy5:BD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    57635 1vy5:BD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    57636 1vy5:BD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    57637 1vy5:BD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    57638 1vy5:BD (2.55) BS09 MG ? GO:0002181 ... P60405 25132179
    57639 1vy5:BD (2.55) BS10 MG ? GO:0002181 ... P60405 25132179
    57640 1vy5:BD (2.55) BS11 MG ? GO:0002181 ... P60405 25132179
    57641 1vy5:BE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    57642 1vy5:BE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    57643 1vy5:BE (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    57644 1vy5:BE (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    57645 1vy5:BF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    57646 1vy5:BF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    57647 1vy5:BF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    57648 1vy5:BF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    57649 1vy5:BF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    57650 1vy5:BF (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    57651 1vy5:BF (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    57652 1vy5:BF (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    57653 1vy5:BF (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    57654 1vy5:BF (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 25132179
    57655 1vy5:BG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    57656 1vy5:BG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    57657 1vy5:BG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    57658 1vy5:BG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    57659 1vy5:BG (2.55) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    57660 1vy5:BH (2.55) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    57661 1vy5:BI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    57662 1vy5:BN (2.55) BS01 rna ? GO:0003729 ... P60488 25132179
    57663 1vy5:BN (2.55) BS02 MG ? GO:0003729 ... P60488 25132179
    57664 1vy5:BN (2.55) BS03 MG ? GO:0003729 ... P60488 25132179
    57665 1vy5:BN (2.55) BS04 MG ? GO:0003729 ... P60488 25132179
    57666 1vy5:BO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    57667 1vy5:BO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    57668 1vy5:BP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    57669 1vy5:BP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    57670 1vy5:BP (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    57671 1vy5:BQ (2.55) BS01 rna ? GO:0000049 ... P60489 25132179
    57672 1vy5:BQ (2.55) BS02 rna ? GO:0000049 ... P60489 25132179
    57673 1vy5:BQ (2.55) BS03 rna ? GO:0000049 ... P60489 25132179
    57674 1vy5:BQ (2.55) BS04 MG ? GO:0000049 ... P60489 25132179
    57675 1vy5:BQ (2.55) BS05 MG ? GO:0000049 ... P60489 25132179
    57676 1vy5:BQ (2.55) BS06 MG ? GO:0000049 ... P60489 25132179
    57677 1vy5:BQ (2.55) BS07 MG ? GO:0000049 ... P60489 25132179
    57678 1vy5:BR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    57679 1vy5:BR (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    57680 1vy5:BR (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    57681 1vy5:BS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    57682 1vy5:BS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    57683 1vy5:BT (2.55) BS01 rna ? GO:0003735 ... P60490 25132179
    57684 1vy5:BT (2.55) BS02 rna ? GO:0003735 ... P60490 25132179
    57685 1vy5:BU (2.55) BS01 rna ? GO:0000027 ... P60491 25132179
    57686 1vy5:BU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    57687 1vy5:BU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    57688 1vy5:BU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    57689 1vy5:BU (2.55) BS05 MG ? GO:0000027 ... P60491 25132179
    57690 1vy5:BU (2.55) BS06 MG ? GO:0000027 ... P60491 25132179
    57691 1vy5:BU (2.55) BS07 MG ? GO:0000027 ... P60491 25132179
    57692 1vy5:BU (2.55) BS08 MG ? GO:0000027 ... P60491 25132179
    57693 1vy5:BV (2.55) BS01 rna ? GO:0003723 ... P60492 25132179
    57694 1vy5:BV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    57695 1vy5:BV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    57696 1vy5:BV (2.55) BS04 MG ? GO:0003723 ... P60492 25132179
    57697 1vy5:BV (2.55) BS05 MG ? GO:0003723 ... P60492 25132179
    57698 1vy5:BV (2.55) BS06 MG ? GO:0003723 ... P60492 25132179
    57699 1vy5:BW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    57700 1vy5:BW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    57701 1vy5:BW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    57702 1vy5:BW (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 25132179
    57703 1vy5:BX (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    57704 1vy5:BX (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    57705 1vy5:BX (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 25132179
    57706 1vy5:BY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    57707 1vy5:BY (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    57708 1vy5:BZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    57709 1vy5:BZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    57710 1vy5:CB (2.55) BS01 rna ? GO:0003735 ... P80371 25132179
    57711 1vy5:CC (2.55) BS01 rna ? GO:0003676 ... P80372 25132179
    57712 1vy5:CD (2.55) BS01 rna ? GO:0003723 ... P80373 25132179
    57713 1vy5:CD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25132179
    57714 1vy5:CE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    57715 1vy5:CE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    57716 1vy5:CF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    57717 1vy5:CF (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    57718 1vy5:CG (2.55) BS01 rna ? GO:0000028 ... P17291 25132179
    57719 1vy5:CG (2.55) BS02 rna ? GO:0000028 ... P17291 25132179
    57720 1vy5:CH (2.55) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    57721 1vy5:CI (2.55) BS01 rna ? GO:0000049 ... P80374 25132179
    57722 1vy5:CI (2.55) BS02 rna ? GO:0000049 ... P80374 25132179
    57723 1vy5:CJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    57724 1vy5:CK (2.55) BS01 rna ? GO:0003735 ... P80376 25132179
    57725 1vy5:CK (2.55) BS02 MG ? GO:0003735 ... P80376 25132179
    57726 1vy5:CL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    57727 1vy5:CM (2.55) BS01 rna ? GO:0000049 ... P80377 25132179
    57728 1vy5:CM (2.55) BS02 rna ? GO:0000049 ... P80377 25132179
    57729 1vy5:CM (2.55) BS03 rna ? GO:0000049 ... P80377 25132179
    57730 1vy5:CN (2.55) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    57731 1vy5:CN (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    57732 1vy5:CO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    57733 1vy5:CO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    57734 1vy5:CP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    57735 1vy5:CQ (2.55) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    57736 1vy5:CR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    57737 1vy5:CS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    57738 1vy5:CT (2.55) BS01 rna ? GO:0003723 ... P80380 25132179
    57739 1vy5:CT (2.55) BS02 MG ? GO:0003723 ... P80380 25132179
    57740 1vy5:D0 (2.55) BS01 rna ? GO:0003735 ... P60493 25132179
    57741 1vy5:D0 (2.55) BS02 rna ? GO:0003735 ... P60493 25132179
    57742 1vy5:D1 (2.55) BS01 rna ? GO:0003735 ... P60494 25132179
    57743 1vy5:D1 (2.55) BS02 rna ? GO:0003735 ... P60494 25132179
    57744 1vy5:D2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    57745 1vy5:D3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    57746 1vy5:D3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    57747 1vy5:D4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    57748 1vy5:D4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    57749 1vy5:D5 (2.55) BS01 rna ? GO:0003735 ... P80339 25132179
    57750 1vy5:D5 (2.55) BS02 ZN ? GO:0003735 ... P80339 25132179
    57751 1vy5:D6 (2.55) BS01 rna ? GO:0000049 ... P35871 25132179
    57752 1vy5:D6 (2.55) BS02 ZN ? GO:0000049 ... P35871 25132179
    57753 1vy5:D7 (2.55) BS01 rna ? GO:0003735 ... P80340 25132179
    57754 1vy5:D8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    57755 1vy5:D9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    57756 1vy5:D9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    57757 1vy5:DD (2.55) BS01 rna ? GO:0002181 ... P60405 25132179
    57758 1vy5:DD (2.55) BS02 rna ? GO:0002181 ... P60405 25132179
    57759 1vy5:DD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    57760 1vy5:DD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    57761 1vy5:DD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    57762 1vy5:DD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    57763 1vy5:DD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    57764 1vy5:DD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    57765 1vy5:DE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    57766 1vy5:DE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    57767 1vy5:DF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    57768 1vy5:DF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    57769 1vy5:DF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    57770 1vy5:DF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    57771 1vy5:DF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    57772 1vy5:DG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    57773 1vy5:DG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    57774 1vy5:DG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    57775 1vy5:DG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    57776 1vy5:DH (2.55) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    57777 1vy5:DI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    57778 1vy5:DN (2.55) BS01 rna ? GO:0003729 ... P60488 25132179
    57779 1vy5:DO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    57780 1vy5:DO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    57781 1vy5:DP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    57782 1vy5:DP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    57783 1vy5:DQ (2.55) BS01 rna ? GO:0000049 ... P60489 25132179
    57784 1vy5:DQ (2.55) BS02 rna ? GO:0000049 ... P60489 25132179
    57785 1vy5:DQ (2.55) BS03 rna ? GO:0000049 ... P60489 25132179
    57786 1vy5:DQ (2.55) BS04 MG ? GO:0000049 ... P60489 25132179
    57787 1vy5:DQ (2.55) BS05 MG ? GO:0000049 ... P60489 25132179
    57788 1vy5:DQ (2.55) BS06 MG ? GO:0000049 ... P60489 25132179
    57789 1vy5:DR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    57790 1vy5:DS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    57791 1vy5:DS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    57792 1vy5:DT (2.55) BS01 rna ? GO:0003735 ... P60490 25132179
    57793 1vy5:DT (2.55) BS02 rna ? GO:0003735 ... P60490 25132179
    57794 1vy5:DU (2.55) BS01 rna ? GO:0000027 ... P60491 25132179
    57795 1vy5:DU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    57796 1vy5:DU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    57797 1vy5:DU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    57798 1vy5:DV (2.55) BS01 rna ? GO:0003723 ... P60492 25132179
    57799 1vy5:DV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    57800 1vy5:DV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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