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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    57201 1vvj:QK (3.44) BS01 rna ? GO:0003735 ... P80376 25128388
    57202 1vvj:QL (3.44) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    57203 1vvj:QM (3.44) BS01 rna ? GO:0000049 ... P80377 25128388
    57204 1vvj:QM (3.44) BS02 rna ? GO:0000049 ... P80377 25128388
    57205 1vvj:QM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    57206 1vvj:QN (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    57207 1vvj:QN (3.44) BS02 ZN N/A GO:0003735 ... N/A 25128388
    57208 1vvj:QO (3.44) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    57209 1vvj:QO (3.44) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    57210 1vvj:QP (3.44) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    57211 1vvj:QQ (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    57212 1vvj:QR (3.44) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    57213 1vvj:QS (3.44) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    57214 1vvj:QT (3.44) BS01 rna ? GO:0003723 ... P80380 25128388
    57215 1vvj:R0 (3.44) BS01 rna ? GO:0003735 ... P60493 25128388
    57216 1vvj:R0 (3.44) BS02 rna ? GO:0003735 ... P60493 25128388
    57217 1vvj:R0 (3.44) BS03 rna ? GO:0003735 ... P60493 25128388
    57218 1vvj:R1 (3.44) BS01 rna ? GO:0003735 ... P60494 25128388
    57219 1vvj:R2 (3.44) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    57220 1vvj:R3 (3.44) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    57221 1vvj:R3 (3.44) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    57222 1vvj:R4 (3.44) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    57223 1vvj:R5 (3.44) BS01 rna ? GO:0003735 ... P80339 25128388
    57224 1vvj:R6 (3.44) BS01 rna ? GO:0000049 ... P35871 25128388
    57225 1vvj:R7 (3.44) BS01 rna ? GO:0003735 ... P80340 25128388
    57226 1vvj:R8 (3.44) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    57227 1vvj:RD (3.44) BS01 rna ? GO:0002181 ... P60405 25128388
    57228 1vvj:RD (3.44) BS02 rna ? GO:0002181 ... P60405 25128388
    57229 1vvj:RD (3.44) BS03 MG ? GO:0002181 ... P60405 25128388
    57230 1vvj:RE (3.44) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    57231 1vvj:RF (3.44) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    57232 1vvj:RG (3.44) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    57233 1vvj:RG (3.44) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    57234 1vvj:RH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    57235 1vvj:RI (3.44) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    57236 1vvj:RN (3.44) BS01 rna ? GO:0003729 ... P60488 25128388
    57237 1vvj:RO (3.44) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    57238 1vvj:RO (3.44) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    57239 1vvj:RP (3.44) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    57240 1vvj:RQ (3.44) BS01 rna ? GO:0000049 ... P60489 25128388
    57241 1vvj:RR (3.44) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    57242 1vvj:RS (3.44) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    57243 1vvj:RS (3.44) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    57244 1vvj:RT (3.44) BS01 rna ? GO:0003735 ... P60490 25128388
    57245 1vvj:RT (3.44) BS02 rna ? GO:0003735 ... P60490 25128388
    57246 1vvj:RU (3.44) BS01 rna ? GO:0000027 ... P60491 25128388
    57247 1vvj:RV (3.44) BS01 rna ? GO:0003723 ... P60492 25128388
    57248 1vvj:RW (3.44) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    57249 1vvj:RX (3.44) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    57250 1vvj:RY (3.44) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    57251 1vvj:RZ (3.44) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    57252 1vvj:XB (3.44) BS01 rna ? GO:0003735 ... P80371 25128388
    57253 1vvj:XC (3.44) BS01 rna ? GO:0003676 ... P80372 25128388
    57254 1vvj:XD (3.44) BS01 rna ? GO:0003723 ... P80373 25128388
    57255 1vvj:XD (3.44) BS02 ZN ? GO:0003723 ... P80373 25128388
    57256 1vvj:XE (3.44) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    57257 1vvj:XF (3.44) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    57258 1vvj:XG (3.44) BS01 rna ? GO:0000028 ... P17291 25128388
    57259 1vvj:XH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    57260 1vvj:XI (3.44) BS01 rna ? GO:0000049 ... P80374 25128388
    57261 1vvj:XI (3.44) BS02 rna ? GO:0000049 ... P80374 25128388
    57262 1vvj:XJ (3.44) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    57263 1vvj:XK (3.44) BS01 rna ? GO:0003735 ... P80376 25128388
    57264 1vvj:XL (3.44) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    57265 1vvj:XM (3.44) BS01 rna ? GO:0000049 ... P80377 25128388
    57266 1vvj:XM (3.44) BS02 rna ? GO:0000049 ... P80377 25128388
    57267 1vvj:XM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    57268 1vvj:XN (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    57269 1vvj:XN (3.44) BS02 ZN N/A GO:0003735 ... N/A 25128388
    57270 1vvj:XO (3.44) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    57271 1vvj:XO (3.44) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    57272 1vvj:XP (3.44) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    57273 1vvj:XQ (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    57274 1vvj:XR (3.44) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    57275 1vvj:XS (3.44) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    57276 1vvj:XT (3.44) BS01 rna ? GO:0003723 ... P80380 25128388
    57277 1vvj:Y0 (3.44) BS01 rna ? GO:0003735 ... P60493 25128388
    57278 1vvj:Y0 (3.44) BS02 rna ? GO:0003735 ... P60493 25128388
    57279 1vvj:Y0 (3.44) BS03 rna ? GO:0003735 ... P60493 25128388
    57280 1vvj:Y1 (3.44) BS01 rna ? GO:0003735 ... P60494 25128388
    57281 1vvj:Y2 (3.44) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    57282 1vvj:Y3 (3.44) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    57283 1vvj:Y3 (3.44) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    57284 1vvj:Y4 (3.44) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    57285 1vvj:Y5 (3.44) BS01 rna ? GO:0003735 ... P80339 25128388
    57286 1vvj:Y6 (3.44) BS01 rna ? GO:0000049 ... P35871 25128388
    57287 1vvj:Y7 (3.44) BS01 rna ? GO:0003735 ... P80340 25128388
    57288 1vvj:Y8 (3.44) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    57289 1vvj:YD (3.44) BS01 rna ? GO:0002181 ... P60405 25128388
    57290 1vvj:YD (3.44) BS02 MG ? GO:0002181 ... P60405 25128388
    57291 1vvj:YE (3.44) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    57292 1vvj:YF (3.44) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    57293 1vvj:YG (3.44) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    57294 1vvj:YG (3.44) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    57295 1vvj:YH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    57296 1vvj:YI (3.44) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    57297 1vvj:YI (3.44) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    57298 1vvj:YN (3.44) BS01 rna ? GO:0003729 ... P60488 25128388
    57299 1vvj:YO (3.44) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    57300 1vvj:YO (3.44) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    57301 1vvj:YP (3.44) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    57302 1vvj:YQ (3.44) BS01 rna ? GO:0000049 ... P60489 25128388
    57303 1vvj:YR (3.44) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    57304 1vvj:YS (3.44) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    57305 1vvj:YS (3.44) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    57306 1vvj:YT (3.44) BS01 rna ? GO:0003735 ... P60490 25128388
    57307 1vvj:YT (3.44) BS02 rna ? GO:0003735 ... P60490 25128388
    57308 1vvj:YU (3.44) BS01 rna ? GO:0000027 ... P60491 25128388
    57309 1vvj:YV (3.44) BS01 rna ? GO:0003723 ... P60492 25128388
    57310 1vvj:YW (3.44) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    57311 1vvj:YX (3.44) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    57312 1vvj:YY (3.44) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    57313 1vvj:YZ (3.44) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    57314 1vwa:B (1.85) BS01 peptide ? GO:0009374 ... P22629 9148939
    57315 1vwa:D (1.85) BS01 peptide ? GO:0009374 ... P22629 9148939
    57316 1vwb:B (1.82) BS01 peptide ? GO:0009374 ... P22629 9148939
    57317 1vwc:B (1.86) BS01 peptide ? GO:0009374 ... P22629 9148939
    57318 1vwd:B (1.87) BS01 peptide ? GO:0009374 ... P22629 9148939
    57319 1vwe:B (1.5) BS01 peptide ? GO:0009374 ... P22629 9148939
    57320 1vwf:B (1.92) BS01 peptide ? GO:0009374 ... P22629 9148939
    57321 1vwg:B (1.46) BS01 peptide ? GO:0009374 ... P22629 9148939
    57322 1vwh:B (1.48) BS01 peptide ? GO:0009374 ... P22629 9148939
    57323 1vwi:B (1.5) BS01 peptide ? GO:0009374 ... P22629 9148939
    57324 1vwi:D (1.5) BS01 peptide ? GO:0009374 ... P22629 9148939
    57325 1vwj:B (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    57326 1vwj:D (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    57327 1vwk:B (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    57328 1vwk:D (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    57329 1vwl:B (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    57330 1vwl:D (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    57331 1vwm:B (1.6) BS01 peptide ? GO:0009374 ... P22629 9148939
    57332 1vwn:B (1.85) BS01 peptide ? GO:0009374 ... P22629 9148939
    57333 1vwo:B (1.65) BS01 peptide ? GO:0009374 ... P22629 9148939
    57334 1vwp:B (1.75) BS01 peptide ? GO:0009374 ... P22629 9148939
    57335 1vwq:B (1.7) BS01 peptide ? GO:0009374 ... P22629 9148939
    57336 1vwr:B (1.5) BS01 peptide ? GO:0009374 ... P22629 9148939
    57337 1vwt:A (1.9) BS01 HEM ? GO:0004601 ... P69905 9649306
    57338 1vwt:B (1.9) BS01 HEM ? GO:0004601 ... P68871 9649306
    57339 1vwt:C (1.9) BS01 HEM ? GO:0004601 ... P69905 9649306
    57340 1vwt:D (1.9) BS01 HEM ? GO:0004601 ... P68871 9649306
    57341 1vxa:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    57342 1vxb:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    57343 1vxc:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    57344 1vxd:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    57345 1vxe:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    57346 1vxf:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    57347 1vxg:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    57348 1vxh:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    57349 1vxo:A (2.4) BS01 VXA 3.1.1.7 GO:0001507 ... P04058 N/A
    57350 1vxr:A (2.2) BS01 VX 3.1.1.7 GO:0001507 ... P04058 N/A
    57351 1vy4:AB (2.6) BS01 rna ? GO:0003735 ... P80371 25132179
    57352 1vy4:AB (2.6) BS02 MG ? GO:0003735 ... P80371 25132179
    57353 1vy4:AC (2.6) BS01 rna ? GO:0003676 ... P80372 25132179
    57354 1vy4:AD (2.6) BS01 rna ? GO:0003723 ... P80373 25132179
    57355 1vy4:AD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    57356 1vy4:AE (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    57357 1vy4:AE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    57358 1vy4:AF (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    57359 1vy4:AG (2.6) BS01 rna ? GO:0000028 ... P17291 25132179
    57360 1vy4:AG (2.6) BS02 rna ? GO:0000028 ... P17291 25132179
    57361 1vy4:AH (2.6) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    57362 1vy4:AI (2.6) BS01 rna ? GO:0000049 ... P80374 25132179
    57363 1vy4:AI (2.6) BS02 rna ? GO:0000049 ... P80374 25132179
    57364 1vy4:AJ (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    57365 1vy4:AK (2.6) BS01 rna ? GO:0003735 ... P80376 25132179
    57366 1vy4:AK (2.6) BS02 MG ? GO:0003735 ... P80376 25132179
    57367 1vy4:AL (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    57368 1vy4:AL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    57369 1vy4:AM (2.6) BS01 rna ? GO:0000049 ... P80377 25132179
    57370 1vy4:AM (2.6) BS02 rna ? GO:0000049 ... P80377 25132179
    57371 1vy4:AM (2.6) BS03 rna ? GO:0000049 ... P80377 25132179
    57372 1vy4:AM (2.6) BS04 MG ? GO:0000049 ... P80377 25132179
    57373 1vy4:AN (2.6) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    57374 1vy4:AN (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    57375 1vy4:AO (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    57376 1vy4:AO (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    57377 1vy4:AP (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    57378 1vy4:AQ (2.6) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    57379 1vy4:AR (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    57380 1vy4:AS (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    57381 1vy4:AT (2.6) BS01 rna ? GO:0003723 ... P80380 25132179
    57382 1vy4:AT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    57383 1vy4:B0 (2.6) BS01 rna ? GO:0003735 ... P60493 25132179
    57384 1vy4:B0 (2.6) BS02 rna ? GO:0003735 ... P60493 25132179
    57385 1vy4:B0 (2.6) BS03 MG ? GO:0003735 ... P60493 25132179
    57386 1vy4:B1 (2.6) BS01 rna ? GO:0003735 ... P60494 25132179
    57387 1vy4:B1 (2.6) BS02 rna ? GO:0003735 ... P60494 25132179
    57388 1vy4:B2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    57389 1vy4:B3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    57390 1vy4:B3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    57391 1vy4:B4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    57392 1vy4:B4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    57393 1vy4:B5 (2.6) BS01 rna ? GO:0003735 ... P80339 25132179
    57394 1vy4:B5 (2.6) BS02 MG ? GO:0003735 ... P80339 25132179
    57395 1vy4:B5 (2.6) BS03 ZN ? GO:0003735 ... P80339 25132179
    57396 1vy4:B6 (2.6) BS01 rna ? GO:0000049 ... P35871 25132179
    57397 1vy4:B6 (2.6) BS02 ZN ? GO:0000049 ... P35871 25132179
    57398 1vy4:B7 (2.6) BS01 rna ? GO:0003735 ... P80340 25132179
    57399 1vy4:B7 (2.6) BS02 MG ? GO:0003735 ... P80340 25132179
    57400 1vy4:B7 (2.6) BS03 MG ? GO:0003735 ... P80340 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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