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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    56801 1vq8:S (2.2) BS01 rna ? GO:0000027 ... P12732 16285925
    56802 1vq8:T (2.2) BS01 rna ? GO:0002181 ... P10972 16285925
    56803 1vq8:T (2.2) BS02 MG ? GO:0002181 ... P10972 16285925
    56804 1vq8:U (2.2) BS01 rna ? GO:0003735 ... P14116 16285925
    56805 1vq8:V (2.2) BS01 rna ? GO:0003735 ... P10971 16285925
    56806 1vq8:W (2.2) BS01 rna ? GO:0000463 ... P14121 16285925
    56807 1vq8:W (2.2) BS02 rna ? GO:0000463 ... P14121 16285925
    56808 1vq8:X (2.2) BS01 rna ? GO:0002181 ... P18138 16285925
    56809 1vq8:Y (2.2) BS01 rna ? GO:0000166 ... P12736 16285925
    56810 1vq8:Y (2.2) BS02 MG ? GO:0000166 ... P12736 16285925
    56811 1vq8:Z (2.2) BS01 rna ? GO:0003735 ... P60619 16285925
    56812 1vq9:1 (2.4) BS01 rna ? GO:0003723 ... P32410 16285925
    56813 1vq9:2 (2.4) BS01 rna ? GO:0003735 ... P22452 16285925
    56814 1vq9:3 (2.4) BS01 rna ? GO:0000049 ... P32411 16285925
    56815 1vq9:A (2.4) BS01 rna ? GO:0002181 ... P20276 16285925
    56816 1vq9:A (2.4) BS02 MG ? GO:0002181 ... P20276 16285925
    56817 1vq9:B (2.4) BS01 rna ? GO:0003723 ... P20279 16285925
    56818 1vq9:C (2.4) BS01 rna ? GO:0003723 ... P12735 16285925
    56819 1vq9:D (2.4) BS01 rna ? GO:0000049 ... P14124 16285925
    56820 1vq9:D (2.4) BS02 rna ? GO:0000049 ... P14124 16285925
    56821 1vq9:E (2.4) BS01 rna ? GO:0002181 ... P14135 16285925
    56822 1vq9:F (2.4) BS01 rna ? GO:0001682 ... P12743 16285925
    56823 1vq9:H (2.4) BS01 rna ? GO:0000027 ... P60617 16285925
    56824 1vq9:H (2.4) BS02 rna ? GO:0000027 ... P60617 16285925
    56825 1vq9:I (2.4) BS01 rna ? GO:0003735 ... P14122 16285925
    56826 1vq9:J (2.4) BS01 rna ? GO:0003729 ... P29198 16285925
    56827 1vq9:K (2.4) BS01 rna ? GO:0003735 ... P22450 16285925
    56828 1vq9:L (2.4) BS01 rna ? GO:0003735 ... P12737 16285925
    56829 1vq9:M (2.4) BS01 rna ? GO:0002181 ... P60618 16285925
    56830 1vq9:N (2.4) BS01 rna ? GO:0000027 ... P14123 16285925
    56831 1vq9:N (2.4) BS02 rna ? GO:0000027 ... P14123 16285925
    56832 1vq9:O (2.4) BS01 rna ? GO:0003723 ... P12733 16285925
    56833 1vq9:P (2.4) BS01 rna ? GO:0003723 ... P14119 16285925
    56834 1vq9:Q (2.4) BS01 rna ? GO:0003735 ... P12734 16285925
    56835 1vq9:Q (2.4) BS02 rna ? GO:0003735 ... P12734 16285925
    56836 1vq9:R (2.4) BS01 rna ? GO:0002181 ... P10970 16285925
    56837 1vq9:S (2.4) BS01 rna ? GO:0000027 ... P12732 16285925
    56838 1vq9:T (2.4) BS01 rna ? GO:0002181 ... P10972 16285925
    56839 1vq9:T (2.4) BS02 MG ? GO:0002181 ... P10972 16285925
    56840 1vq9:U (2.4) BS01 rna ? GO:0003735 ... P14116 16285925
    56841 1vq9:V (2.4) BS01 rna ? GO:0003735 ... P10971 16285925
    56842 1vq9:W (2.4) BS01 rna ? GO:0000463 ... P14121 16285925
    56843 1vq9:W (2.4) BS02 rna ? GO:0000463 ... P14121 16285925
    56844 1vq9:X (2.4) BS01 rna ? GO:0002181 ... P18138 16285925
    56845 1vq9:Y (2.4) BS01 rna ? GO:0000166 ... P12736 16285925
    56846 1vq9:Y (2.4) BS02 MG ? GO:0000166 ... P12736 16285925
    56847 1vq9:Z (2.4) BS01 rna ? GO:0003735 ... P60619 16285925
    56848 1vqk:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    56849 1vqk:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    56850 1vqk:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    56851 1vqk:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    56852 1vqk:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    56853 1vqk:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    56854 1vqk:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    56855 1vqk:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    56856 1vqk:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    56857 1vqk:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    56858 1vqk:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    56859 1vqk:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    56860 1vqk:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    56861 1vqk:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    56862 1vqk:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    56863 1vqk:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    56864 1vqk:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    56865 1vqk:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    56866 1vqk:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    56867 1vqk:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    56868 1vqk:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    56869 1vqk:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    56870 1vqk:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    56871 1vqk:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    56872 1vqk:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    56873 1vqk:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    56874 1vqk:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    56875 1vqk:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    56876 1vqk:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    56877 1vqk:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    56878 1vqk:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    56879 1vqk:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    56880 1vqk:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    56881 1vqk:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    56882 1vqk:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    56883 1vqk:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    56884 1vql:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    56885 1vql:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    56886 1vql:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    56887 1vql:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    56888 1vql:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    56889 1vql:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    56890 1vql:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    56891 1vql:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    56892 1vql:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    56893 1vql:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    56894 1vql:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    56895 1vql:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    56896 1vql:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    56897 1vql:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    56898 1vql:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    56899 1vql:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    56900 1vql:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    56901 1vql:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    56902 1vql:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    56903 1vql:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    56904 1vql:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    56905 1vql:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    56906 1vql:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    56907 1vql:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    56908 1vql:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    56909 1vql:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    56910 1vql:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    56911 1vql:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    56912 1vql:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    56913 1vql:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    56914 1vql:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    56915 1vql:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    56916 1vql:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    56917 1vql:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    56918 1vql:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    56919 1vql:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    56920 1vqm:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    56921 1vqm:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    56922 1vqm:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    56923 1vqm:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    56924 1vqm:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    56925 1vqm:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    56926 1vqm:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    56927 1vqm:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    56928 1vqm:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    56929 1vqm:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    56930 1vqm:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    56931 1vqm:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    56932 1vqm:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    56933 1vqm:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    56934 1vqm:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    56935 1vqm:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    56936 1vqm:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    56937 1vqm:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    56938 1vqm:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    56939 1vqm:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    56940 1vqm:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    56941 1vqm:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    56942 1vqm:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    56943 1vqm:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    56944 1vqm:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    56945 1vqm:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    56946 1vqm:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    56947 1vqm:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    56948 1vqm:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    56949 1vqm:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    56950 1vqm:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    56951 1vqm:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    56952 1vqm:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    56953 1vqm:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    56954 1vqm:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    56955 1vqm:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    56956 1vqn:1 (2.4) BS01 rna ? GO:0003723 ... P32410 16306996
    56957 1vqn:2 (2.4) BS01 rna ? GO:0003735 ... P22452 16306996
    56958 1vqn:3 (2.4) BS01 rna ? GO:0000049 ... P32411 16306996
    56959 1vqn:A (2.4) BS01 rna ? GO:0002181 ... P20276 16306996
    56960 1vqn:A (2.4) BS02 MG ? GO:0002181 ... P20276 16306996
    56961 1vqn:A (2.4) BS03 MG ? GO:0002181 ... P20276 16306996
    56962 1vqn:B (2.4) BS01 rna ? GO:0003723 ... P20279 16306996
    56963 1vqn:C (2.4) BS01 rna ? GO:0003723 ... P12735 16306996
    56964 1vqn:D (2.4) BS01 rna ? GO:0000049 ... P14124 16306996
    56965 1vqn:D (2.4) BS02 rna ? GO:0000049 ... P14124 16306996
    56966 1vqn:E (2.4) BS01 rna ? GO:0002181 ... P14135 16306996
    56967 1vqn:F (2.4) BS01 rna ? GO:0001682 ... P12743 16306996
    56968 1vqn:H (2.4) BS01 rna ? GO:0000027 ... P60617 16306996
    56969 1vqn:I (2.4) BS01 rna ? GO:0003735 ... P14122 16306996
    56970 1vqn:J (2.4) BS01 rna ? GO:0003729 ... P29198 16306996
    56971 1vqn:K (2.4) BS01 rna ? GO:0003735 ... P22450 16306996
    56972 1vqn:L (2.4) BS01 rna ? GO:0003735 ... P12737 16306996
    56973 1vqn:M (2.4) BS01 rna ? GO:0002181 ... P60618 16306996
    56974 1vqn:N (2.4) BS01 rna ? GO:0000027 ... P14123 16306996
    56975 1vqn:N (2.4) BS02 rna ? GO:0000027 ... P14123 16306996
    56976 1vqn:O (2.4) BS01 rna ? GO:0003723 ... P12733 16306996
    56977 1vqn:P (2.4) BS01 rna ? GO:0003723 ... P14119 16306996
    56978 1vqn:Q (2.4) BS01 rna ? GO:0003735 ... P12734 16306996
    56979 1vqn:Q (2.4) BS02 rna ? GO:0003735 ... P12734 16306996
    56980 1vqn:R (2.4) BS01 rna ? GO:0002181 ... P10970 16306996
    56981 1vqn:S (2.4) BS01 rna ? GO:0000027 ... P12732 16306996
    56982 1vqn:T (2.4) BS01 rna ? GO:0002181 ... P10972 16306996
    56983 1vqn:T (2.4) BS02 MG ? GO:0002181 ... P10972 16306996
    56984 1vqn:U (2.4) BS01 rna ? GO:0003735 ... P14116 16306996
    56985 1vqn:V (2.4) BS01 rna ? GO:0003735 ... P10971 16306996
    56986 1vqn:W (2.4) BS01 rna ? GO:0000463 ... P14121 16306996
    56987 1vqn:W (2.4) BS02 rna ? GO:0000463 ... P14121 16306996
    56988 1vqn:X (2.4) BS01 rna ? GO:0002181 ... P18138 16306996
    56989 1vqn:Y (2.4) BS01 rna ? GO:0000166 ... P12736 16306996
    56990 1vqn:Y (2.4) BS02 MG ? GO:0000166 ... P12736 16306996
    56991 1vqn:Z (2.4) BS01 rna ? GO:0003735 ... P60619 16306996
    56992 1vqo:1 (2.2) BS01 rna ? GO:0003723 ... P32410 16285925
    56993 1vqo:2 (2.2) BS01 rna ? GO:0003735 ... P22452 16285925
    56994 1vqo:3 (2.2) BS01 rna ? GO:0000049 ... P32411 16285925
    56995 1vqo:A (2.2) BS01 rna ? GO:0002181 ... P20276 16285925
    56996 1vqo:A (2.2) BS02 MG ? GO:0002181 ... P20276 16285925
    56997 1vqo:A (2.2) BS03 MG ? GO:0002181 ... P20276 16285925
    56998 1vqo:B (2.2) BS01 rna ? GO:0003723 ... P20279 16285925
    56999 1vqo:C (2.2) BS01 rna ? GO:0003723 ... P12735 16285925
    57000 1vqo:D (2.2) BS01 rna ? GO:0000049 ... P14124 16285925
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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