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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    56601 1vpm:B (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    56602 1vpm:C (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    56603 1vpo:H (2.15) BS01 TES N/A N/A N/A 12196551 MOAD: Kd=0.000000064M
    56604 1vpo:L (2.15) BS01 TES N/A N/A N/A 12196551
    56605 1vpp:V (1.9) BS01 peptide ? GO:0008083 ... P15692 9922142
    56606 1vpp:W (1.9) BS01 peptide ? GO:0008083 ... P15692 9922142
    56607 1vps:A (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    56608 1vps:A (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    56609 1vps:A (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    56610 1vps:B (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    56611 1vps:B (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    56612 1vps:B (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    56613 1vps:C (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    56614 1vps:C (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    56615 1vps:C (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    56616 1vps:D (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    56617 1vps:D (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    56618 1vps:D (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    56619 1vps:E (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    56620 1vps:E (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    56621 1vps:E (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    56622 1vpt:A (1.8) BS01 SAM 2.1.1.57 GO:0003723 ... P07617 8612277
    56623 1vpw:A (2.7) BS01 dna ? GO:0000976 ... P0ACP7 9628480
    56624 1vpw:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 9628480
    56625 1vpy:A (2.52) BS01 ZN ? GO:0046872 ... Q838R9 N/A
    56626 1vpy:A (2.52) BS02 ZN ? GO:0046872 ... Q838R9 N/A
    56627 1vq0:A (2.2) BS01 ZN ? GO:0005737 ... Q9X1B4 16167343
    56628 1vq0:B (2.2) BS01 ZN ? GO:0005737 ... Q9X1B4 16167343
    56629 1vq1:A (2.8) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 N/A
    56630 1vq1:B (2.8) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 N/A
    56631 1vq2:A (2.2) BS01 ZN 3.5.4.12 GO:0003824 ... P16006 15504034
    56632 1vq2:A (2.2) BS02 ZN 3.5.4.12 GO:0003824 ... P16006 15504034
    56633 1vq2:A (2.2) BS03 DDN 3.5.4.12 GO:0003824 ... P16006 15504034
    56634 1vq4:1 (2.7) BS01 rna ? GO:0003723 ... P32410 16285925
    56635 1vq4:2 (2.7) BS01 rna ? GO:0003735 ... P22452 16285925
    56636 1vq4:3 (2.7) BS01 rna ? GO:0000049 ... P32411 16285925
    56637 1vq4:3 (2.7) BS02 MG ? GO:0000049 ... P32411 16285925
    56638 1vq4:A (2.7) BS01 rna ? GO:0002181 ... P20276 16285925
    56639 1vq4:A (2.7) BS02 MG ? GO:0002181 ... P20276 16285925
    56640 1vq4:B (2.7) BS01 rna ? GO:0003723 ... P20279 16285925
    56641 1vq4:C (2.7) BS01 rna ? GO:0003723 ... P12735 16285925
    56642 1vq4:D (2.7) BS01 rna ? GO:0000049 ... P14124 16285925
    56643 1vq4:D (2.7) BS02 rna ? GO:0000049 ... P14124 16285925
    56644 1vq4:E (2.7) BS01 rna ? GO:0002181 ... P14135 16285925
    56645 1vq4:F (2.7) BS01 rna ? GO:0001682 ... P12743 16285925
    56646 1vq4:H (2.7) BS01 rna ? GO:0000027 ... P60617 16285925
    56647 1vq4:I (2.7) BS01 rna ? GO:0003735 ... P14122 16285925
    56648 1vq4:J (2.7) BS01 rna ? GO:0003729 ... P29198 16285925
    56649 1vq4:K (2.7) BS01 rna ? GO:0003735 ... P22450 16285925
    56650 1vq4:L (2.7) BS01 rna ? GO:0003735 ... P12737 16285925
    56651 1vq4:M (2.7) BS01 rna ? GO:0002181 ... P60618 16285925
    56652 1vq4:N (2.7) BS01 rna ? GO:0000027 ... P14123 16285925
    56653 1vq4:N (2.7) BS02 rna ? GO:0000027 ... P14123 16285925
    56654 1vq4:O (2.7) BS01 rna ? GO:0003723 ... P12733 16285925
    56655 1vq4:P (2.7) BS01 rna ? GO:0003723 ... P14119 16285925
    56656 1vq4:Q (2.7) BS01 rna ? GO:0003735 ... P12734 16285925
    56657 1vq4:Q (2.7) BS02 rna ? GO:0003735 ... P12734 16285925
    56658 1vq4:R (2.7) BS01 rna ? GO:0002181 ... P10970 16285925
    56659 1vq4:S (2.7) BS01 rna ? GO:0000027 ... P12732 16285925
    56660 1vq4:T (2.7) BS01 rna ? GO:0002181 ... P10972 16285925
    56661 1vq4:T (2.7) BS02 MG ? GO:0002181 ... P10972 16285925
    56662 1vq4:U (2.7) BS01 rna ? GO:0003735 ... P14116 16285925
    56663 1vq4:V (2.7) BS01 rna ? GO:0003735 ... P10971 16285925
    56664 1vq4:W (2.7) BS01 rna ? GO:0000463 ... P14121 16285925
    56665 1vq4:W (2.7) BS02 rna ? GO:0000463 ... P14121 16285925
    56666 1vq4:X (2.7) BS01 rna ? GO:0002181 ... P18138 16285925
    56667 1vq4:Y (2.7) BS01 rna ? GO:0000166 ... P12736 16285925
    56668 1vq4:Y (2.7) BS02 MG ? GO:0000166 ... P12736 16285925
    56669 1vq4:Z (2.7) BS01 rna ? GO:0003735 ... P60619 16285925
    56670 1vq5:1 (2.6) BS01 rna ? GO:0003723 ... P32410 16285925
    56671 1vq5:2 (2.6) BS01 rna ? GO:0003735 ... P22452 16285925
    56672 1vq5:3 (2.6) BS01 rna ? GO:0000049 ... P32411 16285925
    56673 1vq5:3 (2.6) BS02 MG ? GO:0000049 ... P32411 16285925
    56674 1vq5:A (2.6) BS01 rna ? GO:0002181 ... P20276 16285925
    56675 1vq5:A (2.6) BS02 MG ? GO:0002181 ... P20276 16285925
    56676 1vq5:B (2.6) BS01 rna ? GO:0003723 ... P20279 16285925
    56677 1vq5:C (2.6) BS01 rna ? GO:0003723 ... P12735 16285925
    56678 1vq5:D (2.6) BS01 rna ? GO:0000049 ... P14124 16285925
    56679 1vq5:D (2.6) BS02 rna ? GO:0000049 ... P14124 16285925
    56680 1vq5:E (2.6) BS01 rna ? GO:0002181 ... P14135 16285925
    56681 1vq5:F (2.6) BS01 rna ? GO:0001682 ... P12743 16285925
    56682 1vq5:H (2.6) BS01 rna ? GO:0000027 ... P60617 16285925
    56683 1vq5:I (2.6) BS01 rna ? GO:0003735 ... P14122 16285925
    56684 1vq5:J (2.6) BS01 rna ? GO:0003729 ... P29198 16285925
    56685 1vq5:K (2.6) BS01 rna ? GO:0003735 ... P22450 16285925
    56686 1vq5:L (2.6) BS01 rna ? GO:0003735 ... P12737 16285925
    56687 1vq5:M (2.6) BS01 rna ? GO:0002181 ... P60618 16285925
    56688 1vq5:N (2.6) BS01 rna ? GO:0000027 ... P14123 16285925
    56689 1vq5:N (2.6) BS02 rna ? GO:0000027 ... P14123 16285925
    56690 1vq5:O (2.6) BS01 rna ? GO:0003723 ... P12733 16285925
    56691 1vq5:P (2.6) BS01 rna ? GO:0003723 ... P14119 16285925
    56692 1vq5:Q (2.6) BS01 rna ? GO:0003735 ... P12734 16285925
    56693 1vq5:Q (2.6) BS02 rna ? GO:0003735 ... P12734 16285925
    56694 1vq5:R (2.6) BS01 rna ? GO:0002181 ... P10970 16285925
    56695 1vq5:S (2.6) BS01 rna ? GO:0000027 ... P12732 16285925
    56696 1vq5:T (2.6) BS01 rna ? GO:0002181 ... P10972 16285925
    56697 1vq5:T (2.6) BS02 MG ? GO:0002181 ... P10972 16285925
    56698 1vq5:U (2.6) BS01 rna ? GO:0003735 ... P14116 16285925
    56699 1vq5:V (2.6) BS01 rna ? GO:0003735 ... P10971 16285925
    56700 1vq5:W (2.6) BS01 rna ? GO:0000463 ... P14121 16285925
    56701 1vq5:W (2.6) BS02 rna ? GO:0000463 ... P14121 16285925
    56702 1vq5:X (2.6) BS01 rna ? GO:0002181 ... P18138 16285925
    56703 1vq5:Y (2.6) BS01 rna ? GO:0000166 ... P12736 16285925
    56704 1vq5:Y (2.6) BS02 MG ? GO:0000166 ... P12736 16285925
    56705 1vq5:Z (2.6) BS01 rna ? GO:0003735 ... P60619 16285925
    56706 1vq6:1 (2.7) BS01 rna ? GO:0003723 ... P32410 16306996
    56707 1vq6:2 (2.7) BS01 rna ? GO:0003735 ... P22452 16306996
    56708 1vq6:3 (2.7) BS01 rna ? GO:0000049 ... P32411 16306996
    56709 1vq6:3 (2.7) BS02 MG ? GO:0000049 ... P32411 16306996
    56710 1vq6:A (2.7) BS01 rna ? GO:0002181 ... P20276 16306996
    56711 1vq6:A (2.7) BS02 MG ? GO:0002181 ... P20276 16306996
    56712 1vq6:B (2.7) BS01 rna ? GO:0003723 ... P20279 16306996
    56713 1vq6:C (2.7) BS01 rna ? GO:0003723 ... P12735 16306996
    56714 1vq6:D (2.7) BS01 rna ? GO:0000049 ... P14124 16306996
    56715 1vq6:D (2.7) BS02 rna ? GO:0000049 ... P14124 16306996
    56716 1vq6:E (2.7) BS01 rna ? GO:0002181 ... P14135 16306996
    56717 1vq6:F (2.7) BS01 rna ? GO:0001682 ... P12743 16306996
    56718 1vq6:H (2.7) BS01 rna ? GO:0000027 ... P60617 16306996
    56719 1vq6:I (2.7) BS01 rna ? GO:0003735 ... P14122 16306996
    56720 1vq6:J (2.7) BS01 rna ? GO:0003729 ... P29198 16306996
    56721 1vq6:K (2.7) BS01 rna ? GO:0003735 ... P22450 16306996
    56722 1vq6:L (2.7) BS01 rna ? GO:0003735 ... P12737 16306996
    56723 1vq6:M (2.7) BS01 rna ? GO:0002181 ... P60618 16306996
    56724 1vq6:N (2.7) BS01 rna ? GO:0000027 ... P14123 16306996
    56725 1vq6:N (2.7) BS02 rna ? GO:0000027 ... P14123 16306996
    56726 1vq6:O (2.7) BS01 rna ? GO:0003723 ... P12733 16306996
    56727 1vq6:P (2.7) BS01 rna ? GO:0003723 ... P14119 16306996
    56728 1vq6:Q (2.7) BS01 rna ? GO:0003735 ... P12734 16306996
    56729 1vq6:Q (2.7) BS02 rna ? GO:0003735 ... P12734 16306996
    56730 1vq6:R (2.7) BS01 rna ? GO:0002181 ... P10970 16306996
    56731 1vq6:S (2.7) BS01 rna ? GO:0000027 ... P12732 16306996
    56732 1vq6:T (2.7) BS01 rna ? GO:0002181 ... P10972 16306996
    56733 1vq6:T (2.7) BS02 MG ? GO:0002181 ... P10972 16306996
    56734 1vq6:U (2.7) BS01 rna ? GO:0003735 ... P14116 16306996
    56735 1vq6:V (2.7) BS01 rna ? GO:0003735 ... P10971 16306996
    56736 1vq6:W (2.7) BS01 rna ? GO:0000463 ... P14121 16306996
    56737 1vq6:W (2.7) BS02 rna ? GO:0000463 ... P14121 16306996
    56738 1vq6:X (2.7) BS01 rna ? GO:0002181 ... P18138 16306996
    56739 1vq6:Y (2.7) BS01 rna ? GO:0000166 ... P12736 16306996
    56740 1vq6:Y (2.7) BS02 MG ? GO:0000166 ... P12736 16306996
    56741 1vq6:Z (2.7) BS01 rna ? GO:0003735 ... P60619 16306996
    56742 1vq7:1 (2.5) BS01 rna ? GO:0003723 ... P32410 16306996
    56743 1vq7:2 (2.5) BS01 rna ? GO:0003735 ... P22452 16306996
    56744 1vq7:3 (2.5) BS01 rna ? GO:0000049 ... P32411 16306996
    56745 1vq7:3 (2.5) BS02 MG ? GO:0000049 ... P32411 16306996
    56746 1vq7:A (2.5) BS01 rna ? GO:0002181 ... P20276 16306996
    56747 1vq7:B (2.5) BS01 rna ? GO:0003723 ... P20279 16306996
    56748 1vq7:C (2.5) BS01 rna ? GO:0003723 ... P12735 16306996
    56749 1vq7:D (2.5) BS01 rna ? GO:0000049 ... P14124 16306996
    56750 1vq7:D (2.5) BS02 rna ? GO:0000049 ... P14124 16306996
    56751 1vq7:E (2.5) BS01 rna ? GO:0002181 ... P14135 16306996
    56752 1vq7:F (2.5) BS01 rna ? GO:0001682 ... P12743 16306996
    56753 1vq7:H (2.5) BS01 rna ? GO:0000027 ... P60617 16306996
    56754 1vq7:I (2.5) BS01 rna ? GO:0003735 ... P14122 16306996
    56755 1vq7:J (2.5) BS01 rna ? GO:0003729 ... P29198 16306996
    56756 1vq7:K (2.5) BS01 rna ? GO:0003735 ... P22450 16306996
    56757 1vq7:L (2.5) BS01 rna ? GO:0003735 ... P12737 16306996
    56758 1vq7:M (2.5) BS01 rna ? GO:0002181 ... P60618 16306996
    56759 1vq7:N (2.5) BS01 rna ? GO:0000027 ... P14123 16306996
    56760 1vq7:N (2.5) BS02 rna ? GO:0000027 ... P14123 16306996
    56761 1vq7:O (2.5) BS01 rna ? GO:0003723 ... P12733 16306996
    56762 1vq7:P (2.5) BS01 rna ? GO:0003723 ... P14119 16306996
    56763 1vq7:Q (2.5) BS01 rna ? GO:0003735 ... P12734 16306996
    56764 1vq7:Q (2.5) BS02 rna ? GO:0003735 ... P12734 16306996
    56765 1vq7:R (2.5) BS01 rna ? GO:0002181 ... P10970 16306996
    56766 1vq7:S (2.5) BS01 rna ? GO:0000027 ... P12732 16306996
    56767 1vq7:T (2.5) BS01 rna ? GO:0002181 ... P10972 16306996
    56768 1vq7:T (2.5) BS02 MG ? GO:0002181 ... P10972 16306996
    56769 1vq7:U (2.5) BS01 rna ? GO:0003735 ... P14116 16306996
    56770 1vq7:V (2.5) BS01 rna ? GO:0003735 ... P10971 16306996
    56771 1vq7:W (2.5) BS01 rna ? GO:0000463 ... P14121 16306996
    56772 1vq7:W (2.5) BS02 rna ? GO:0000463 ... P14121 16306996
    56773 1vq7:X (2.5) BS01 rna ? GO:0002181 ... P18138 16306996
    56774 1vq7:Y (2.5) BS01 rna ? GO:0000166 ... P12736 16306996
    56775 1vq7:Y (2.5) BS02 MG ? GO:0000166 ... P12736 16306996
    56776 1vq7:Z (2.5) BS01 rna ? GO:0003735 ... P60619 16306996
    56777 1vq8:1 (2.2) BS01 rna ? GO:0003723 ... P32410 16285925
    56778 1vq8:2 (2.2) BS01 rna ? GO:0003735 ... P22452 16285925
    56779 1vq8:3 (2.2) BS01 rna ? GO:0000049 ... P32411 16285925
    56780 1vq8:A (2.2) BS01 rna ? GO:0002181 ... P20276 16285925
    56781 1vq8:A (2.2) BS02 MG ? GO:0002181 ... P20276 16285925
    56782 1vq8:B (2.2) BS01 rna ? GO:0003723 ... P20279 16285925
    56783 1vq8:C (2.2) BS01 rna ? GO:0003723 ... P12735 16285925
    56784 1vq8:D (2.2) BS01 rna ? GO:0000049 ... P14124 16285925
    56785 1vq8:D (2.2) BS02 rna ? GO:0000049 ... P14124 16285925
    56786 1vq8:E (2.2) BS01 rna ? GO:0002181 ... P14135 16285925
    56787 1vq8:F (2.2) BS01 rna ? GO:0001682 ... P12743 16285925
    56788 1vq8:H (2.2) BS01 rna ? GO:0000027 ... P60617 16285925
    56789 1vq8:I (2.2) BS01 rna ? GO:0003735 ... P14122 16285925
    56790 1vq8:J (2.2) BS01 rna ? GO:0003729 ... P29198 16285925
    56791 1vq8:K (2.2) BS01 rna ? GO:0003735 ... P22450 16285925
    56792 1vq8:L (2.2) BS01 rna ? GO:0003735 ... P12737 16285925
    56793 1vq8:M (2.2) BS01 rna ? GO:0002181 ... P60618 16285925
    56794 1vq8:N (2.2) BS01 rna ? GO:0000027 ... P14123 16285925
    56795 1vq8:N (2.2) BS02 rna ? GO:0000027 ... P14123 16285925
    56796 1vq8:O (2.2) BS01 rna ? GO:0003723 ... P12733 16285925
    56797 1vq8:P (2.2) BS01 rna ? GO:0003723 ... P14119 16285925
    56798 1vq8:Q (2.2) BS01 rna ? GO:0003735 ... P12734 16285925
    56799 1vq8:Q (2.2) BS02 rna ? GO:0003735 ... P12734 16285925
    56800 1vq8:R (2.2) BS01 rna ? GO:0002181 ... P10970 16285925
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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